CRYBB1 (crystallin beta B1) - Rat Genome Database

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Gene: CRYBB1 (crystallin beta B1) Pan paniscus
Analyze
Symbol: CRYBB1
Name: crystallin beta B1
RGD ID: 11974038
Description: ENCODES a protein that exhibits structural constituent of eye lens (ortholog); INVOLVED IN lens development in camera-type eye (inferred); visual perception (inferred); ASSOCIATED WITH cataract (ortholog); cataract 17 multiple types (ortholog); cataract 23 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta-crystallin B1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22336,604,824 - 36,623,396 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12239,303,287 - 39,321,857 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0227,661,085 - 7,679,640 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12225,383,681 - 25,402,158 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2225,383,681 - 25,402,158 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CRYBB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22336,604,824 - 36,623,396 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12239,303,287 - 39,321,857 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0227,661,085 - 7,679,640 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12225,383,681 - 25,402,158 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2225,383,681 - 25,402,158 (-)Ensemblpanpan1.1panPan2
CRYBB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382226,599,278 - 26,618,027 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2226,599,278 - 26,618,027 (-)EnsemblGRCh38hg38GRCh38
GRCh372226,995,242 - 27,013,991 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362225,325,362 - 25,343,991 (-)NCBINCBI36Build 36hg18NCBI36
Build 342225,319,915 - 25,338,545NCBI
Celera2210,799,161 - 10,817,792 (-)NCBICelera
Cytogenetic Map22q12.1ENTREZGENE
HuRef229,942,881 - 9,961,511 (-)NCBIHuRef
CHM1_12226,954,881 - 26,973,527 (-)NCBICHM1_1
T2T-CHM13v2.02227,061,628 - 27,080,697 (-)NCBIT2T-CHM13v2.0
Crybb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395112,403,686 - 112,417,451 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5112,403,681 - 112,417,451 (+)EnsemblGRCm39 Ensembl
GRCm385112,254,563 - 112,269,585 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5112,255,815 - 112,269,585 (+)EnsemblGRCm38mm10GRCm38
MGSCv375112,684,841 - 112,698,602 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365112,496,124 - 112,509,885 (+)NCBIMGSCv36mm8
Celera5109,375,405 - 109,389,151 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map554.63NCBI
Crybb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81250,030,146 - 50,043,756 (-)NCBIGRCr8
mRatBN7.21244,369,734 - 44,383,344 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1244,369,735 - 44,383,344 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1245,538,591 - 45,552,345 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01246,149,005 - 46,162,615 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01245,209,536 - 45,223,146 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01250,390,939 - 50,404,550 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1250,390,940 - 50,404,550 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01252,147,268 - 52,160,879 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1245,952,784 - 45,966,534 (-)NCBICelera
RH 3.4 Map12776.72RGD
Cytogenetic Map12q16NCBI
Crybb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554551,165,048 - 1,180,826 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554551,165,048 - 1,180,826 (-)NCBIChiLan1.0ChiLan1.0
CRYBB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12620,258,873 - 20,269,647 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2620,258,877 - 20,287,217 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2620,122,587 - 20,133,372 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02620,622,023 - 20,632,822 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2620,622,027 - 20,650,377 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12620,343,574 - 20,354,371 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02620,594,199 - 20,605,216 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02620,664,547 - 20,675,365 (-)NCBIUU_Cfam_GSD_1.0
Crybb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118114,660,332 - 114,676,677 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366571,193,474 - 1,210,443 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366571,194,030 - 1,210,345 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRYBB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1444,194,199 - 44,208,154 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11444,194,268 - 44,206,057 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21447,074,156 - 47,085,979 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRYBB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1199,500,341 - 9,517,178 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl199,500,431 - 9,515,068 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045116,585,561 - 116,602,261 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Crybb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247473,125,168 - 3,137,576 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247473,125,168 - 3,137,576 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000032478   ⟹   ENSPPAP00000009834
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2225,383,681 - 25,402,158 (-)Ensembl
RefSeq Acc Id: XM_003820181   ⟹   XP_003820229
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22336,604,824 - 36,623,396 (-)NCBI
NHGRI_mPanPan12239,303,287 - 39,321,857 (-)NCBI
Mhudiblu_PPA_v0227,661,180 - 7,679,640 (-)NCBI
PanPan1.12225,383,681 - 25,402,158 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008973580   ⟹   XP_008971828
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22336,604,841 - 36,621,753 (-)NCBI
NHGRI_mPanPan12239,303,308 - 39,320,214 (-)NCBI
Mhudiblu_PPA_v0227,661,085 - 7,678,107 (-)NCBI
PanPan1.12225,383,681 - 25,400,737 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003820229 (Get FASTA)   NCBI Sequence Viewer  
  XP_008971828 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000009834
  ENSPPAP00000009834.1
Reference Protein Sequences
RefSeq Acc Id: XP_003820229   ⟸   XM_003820181
- UniProtKB: A0A2R9A3H6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008971828   ⟸   XM_008973580
- UniProtKB: A0A2R9A3H6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000009834   ⟸   ENSPPAT00000032478
Protein Domains
Beta/gamma crystallin 'Greek key'


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028143 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000032478.1 UniProtKB/TrEMBL
Gene3D-CATH Crystallins UniProtKB/TrEMBL
InterPro Beta/gamma_crystallin UniProtKB/TrEMBL
  G_crystallin-like UniProtKB/TrEMBL
KEGG Report pps:100980436 UniProtKB/TrEMBL
NCBI Gene CRYBB1 ENTREZGENE
PANTHER BETA/GAMMA CRYSTALLIN UniProtKB/TrEMBL
  PTHR11818:SF12 UniProtKB/TrEMBL
Pfam Crystall UniProtKB/TrEMBL
PRINTS BGCRYSTALLIN UniProtKB/TrEMBL
PROSITE CRYSTALLIN_BETA_GAMMA UniProtKB/TrEMBL
SMART XTALbg UniProtKB/TrEMBL
Superfamily-SCOP SSF49695 UniProtKB/TrEMBL
UniProt A0A2R9A3H6 ENTREZGENE, UniProtKB/TrEMBL