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ONTOLOGY REPORT - ANNOTATIONS

Term:high-density lipoprotein particle
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Accession:GO:0034364 term browser browse the term
Definition:A lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE; found in blood and carries lipids from body tissues to the liver as part of the reverse cholesterol transport process.
Synonyms:exact_synonym: HDL complex;   HDL particle;   high-density lipoprotein class complex
 related_synonym: HDL2;   HDL3

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high-density lipoprotein particle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa1 apolipoprotein A1 part_of IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624784:12,249,283...12,251,215
Ensembl chrNW_004624784:12,249,283...12,251,136 		JBrowse link
G Apoa2 apolipoprotein A2 part_of IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004624794:164,351...165,676
Ensembl chrNW_004624794:164,370...166,248 		JBrowse link
G Apoa4 apolipoprotein A4 part_of IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624784:12,237,329...12,240,013
Ensembl chrNW_004624784:12,233,593...12,239,763 		JBrowse link
G Apoa5 apolipoprotein A5 part_of IEA TreeGrafter
UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624784:12,213,205...12,216,039
Ensembl chrNW_004624784:12,213,744...12,216,026 		JBrowse link
G Apob apolipoprotein B ISO RGD PMID:12091487 RGD:1626402 NCBI chrNW_004624738:3,579,747...3,622,508
Ensembl chrNW_004624738:3,580,033...3,620,192 		JBrowse link
G Apoc1 apolipoprotein C1 part_of IEA
ISO		 TreeGrafter
RGD		 PMID:16282639 GO_REF:0000118 RGD:2313954 NCBI chrNW_004624907:1,758,671...1,760,611
Ensembl chrNW_004624907:1,758,696...1,760,611 		JBrowse link
G Apoc2 apolipoprotein C2 part_of IEA UniProt GO_REF:0000043 NCBI chrNW_004624907:1,765,467...1,769,786
Ensembl chrNW_004624907:1,765,481...1,769,781 		JBrowse link
G Apoe apolipoprotein E part_of ISO
IEA		 RGD
TreeGrafter
UniProt		 PMID:1906919 GO_REF:0000043 GO_REF:0000118 RGD:12880364 NCBI chrNW_004624907:1,752,322...1,755,308 JBrowse link
G Apoh apolipoprotein H part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004624870:2,082,050...2,096,220
Ensembl chrNW_004624870:2,081,968...2,099,517 		JBrowse link
G Apom apolipoprotein M part_of IEA TreeGrafter
UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624754:24,554,705...24,558,093
Ensembl chrNW_004624754:24,554,705...24,557,098 		JBrowse link
G App amyloid beta precursor protein part_of ISO (PMID:22138302)
(PMID:9211985)		 ARUK-UCL PMID:9211985 PMID:22138302 NCBI chrNW_004624745:13,904,912...14,159,374
Ensembl chrNW_004624745:13,902,577...14,159,372 		JBrowse link
G Cetp cholesteryl ester transfer protein part_of IEA TreeGrafter
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624746:29,035,282...29,053,867 JBrowse link
G Lcat lecithin-cholesterol acyltransferase part_of ISO (PMID:3104518) BHF-UCL PMID:3104518 NCBI chrNW_004624746:18,438,308...18,441,650
Ensembl chrNW_004624746:18,437,429...18,441,806 		JBrowse link
G Lipc lipase C, hepatic type part_of IEA UniProt GO_REF:0000043 NCBI chrNW_004624781:13,342,469...13,468,120
Ensembl chrNW_004624781:13,342,357...13,455,055 		JBrowse link
G LOC101712048 serum amyloid A-4 protein part_of IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004624766:9,737,127...9,745,316
Ensembl chrNW_004624766:9,737,467...9,745,351 		JBrowse link
G LOC101713351 serum amyloid A-3 protein part_of IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004624766:9,753,141...9,754,313 JBrowse link
G LOC110350543 serum amyloid A-3 protein-like part_of IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004624766:9,715,921...9,717,984 JBrowse link
G Pla2g7 phospholipase A2 group VII part_of ISO (PMID:11590221) UniProt PMID:11590221 NCBI chrNW_004624754:13,905,084...13,932,366
Ensembl chrNW_004624754:13,904,797...13,931,670 		JBrowse link
G Pltp phospholipid transfer protein part_of ISO (PMID:9132017) BHF-UCL PMID:9132017 NCBI chrNW_004624790:8,673,212...8,686,094
Ensembl chrNW_004624790:8,673,089...8,685,942 		JBrowse link
G Pon1 paraoxonase 1 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004624813:1,953,796...1,979,846
Ensembl chrNW_004624813:1,949,614...1,979,882 		JBrowse link
discoidal high-density lipoprotein particle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa1 apolipoprotein A1 ISO RGD PMID:2493483 RGD:7495790 NCBI chrNW_004624784:12,249,283...12,251,215
Ensembl chrNW_004624784:12,249,283...12,251,136 		JBrowse link
G Apoe apolipoprotein E ISO RGD PMID:2493483 RGD:7495790 NCBI chrNW_004624907:1,752,322...1,755,308 JBrowse link
G Apom apolipoprotein M part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:24,554,705...24,558,093
Ensembl chrNW_004624754:24,554,705...24,557,098 		JBrowse link
spherical high-density lipoprotein particle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa1 apolipoprotein A1 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004624784:12,249,283...12,251,215
Ensembl chrNW_004624784:12,249,283...12,251,136 		JBrowse link
G Apoa2 apolipoprotein A2 part_of IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624794:164,351...165,676
Ensembl chrNW_004624794:164,370...166,248 		JBrowse link
G Apoc2 apolipoprotein C2 part_of ISO (PMID:16682745) BHF-UCL PMID:16682745 NCBI chrNW_004624907:1,765,467...1,769,786
Ensembl chrNW_004624907:1,765,481...1,769,781 		JBrowse link
G Apoc3 apolipoprotein C3 part_of IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624784:12,244,565...12,246,790
Ensembl chrNW_004624784:12,244,646...12,246,790 		JBrowse link
G Apom apolipoprotein M part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:24,554,705...24,558,093
Ensembl chrNW_004624754:24,554,705...24,557,098 		JBrowse link
G Clu clusterin part_of ISO (PMID:16682745) BHF-UCL PMID:16682745 NCBI chrNW_004624758:22,431,331...22,444,185
Ensembl chrNW_004624758:22,426,918...22,444,357 		JBrowse link
G Pon1 paraoxonase 1 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004624813:1,953,796...1,979,846
Ensembl chrNW_004624813:1,949,614...1,979,882 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18616
    cellular anatomical structure 18483
      extracellular space 1359
        plasma lipoprotein particle 25
          high-density lipoprotein particle 22
            discoidal high-density lipoprotein particle 3
            spherical high-density lipoprotein particle 7
Path 2
Term Annotations click to browse term
  cellular_component 18616
    cellular anatomical structure 18483
      extracellular region 1783
        extracellular space 1359
          plasma lipoprotein particle 25
            high-density lipoprotein particle 22
              discoidal high-density lipoprotein particle 3
              spherical high-density lipoprotein particle 7
paths to the root