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ONTOLOGY REPORT - ANNOTATIONS

Term:vesicle lumen
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Accession:GO:0031983 term browser browse the term
Definition:The volume enclosed by the membrane or protein that forms a vesicle.
Synonyms:xref: NIF_Subcellular:sao797538226

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show annotations for term's descendants           Sort by:
vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOB apolipoprotein B ISO RGD PMID:12091487 RGD:1626402 NCBI chr14:86,624,209...86,669,175
Ensembl chr14:86,624,332...86,668,704 		JBrowse link
azurophil granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PRSS57 serine protease 57 located_in ISO (PMID:23904161) UniProt PMID:23904161 NCBI chr 6:443,859...449,539
Ensembl chr 6:444,098...449,152 		JBrowse link
G PRTN3 proteinase 3 located_in ISO (PMID:18462208) UniProt PMID:18462208 NCBI chr 6:590,193...598,829 JBrowse link
chromaffin granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBH dopamine beta-hydroxylase located_in IEA UniProt GO_REF:0000044 NCBI chr12:4,474,041...4,498,942
Ensembl chr12:4,474,958...4,498,910 		JBrowse link
G PENK proenkephalin located_in IEA UniProt GO_REF:0000044 NCBI chr 8:52,458,113...52,463,933
Ensembl chr 8:52,457,904...52,463,859 		JBrowse link
cytoplasmic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase located_in IEA UniProt GO_REF:0000044 NCBI chr 2:19,167,209...19,200,233 JBrowse link
G FASLG Fas ligand located_in IEA UniProt GO_REF:0000044 NCBI chr25:56,488,572...56,496,469
Ensembl chr25:56,489,417...56,496,251 		JBrowse link
G LOC103225849 adenosine deaminase-like located_in IEA UniProt GO_REF:0000044 NCBI chr20:56,255,834...56,268,801 JBrowse link
G SERPINI1 serpin family I member 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:21,610,545...21,696,611
Ensembl chr15:21,610,791...21,645,701 		JBrowse link
multivesicular body, internal vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGFR epidermal growth factor receptor located_in IEA Ensembl GO_REF:0000107 NCBI chr21:3,664,622...3,853,492
Ensembl chr21:3,666,339...3,853,239 		JBrowse link
neuronal dense core vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADCYAP1 adenylate cyclase activating polypeptide 1 is_active_in ISO PMID:9792613 SynGO PMID:9792613 RGD:2312463 NCBI chr18:60,259,479...60,267,302 JBrowse link
G CCK cholecystokinin is_active_in ISO PMID:6084830 SynGO PMID:6084830 RGD:405650225 NCBI chr22:3,698,192...3,705,443
Ensembl chr22:3,698,173...3,704,956 		JBrowse link
G CRH corticotropin releasing hormone is_active_in ISO PMID:19003957 SynGO PMID:19003957 RGD:405650366 NCBI chr 8:62,052,155...62,056,424
Ensembl chr 8:62,052,592...62,053,182 		JBrowse link
G GHRL ghrelin and obestatin prepropeptide is_active_in
located_in		 ISO
IEA		 (PMID:12597862) SynGO
Ensembl		 PMID:12597862 GO_REF:0000107 NCBI chr22:46,326,458...46,332,906
Ensembl chr22:46,325,913...46,330,962 		JBrowse link
G HCRT hypocretin neuropeptide precursor is_active_in ISO PMID:9419374 SynGO PMID:9419374 RGD:1298943 NCBI chr16:64,083,199...64,085,393
Ensembl chr16:64,084,070...64,085,292 		JBrowse link
G IGF1 insulin like growth factor 1 is_active_in ISO (PMID:28683263) SynGO PMID:28683263 NCBI chr11:97,624,498...97,708,730
Ensembl chr11:97,631,189...97,707,308 		JBrowse link
G PDYN prodynorphin is_active_in ISO PMID:7911809 SynGO PMID:7911809 RGD:13702229 NCBI chr 2:54,535,516...54,551,085
Ensembl chr 2:54,535,240...54,551,104 		JBrowse link
G PENK proenkephalin is_active_in ISO PMID:8847409 SynGO PMID:8847409 RGD:13702175 NCBI chr 8:52,458,113...52,463,933
Ensembl chr 8:52,457,904...52,463,859 		JBrowse link
G VPS13A vacuolar protein sorting 13 homolog A located_in IEA Ensembl GO_REF:0000107 NCBI chr12:88,140,842...88,380,966
Ensembl chr12:88,167,258...88,379,614 		JBrowse link
secretory granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DBH dopamine beta-hydroxylase located_in IEA Ensembl GO_REF:0000107 NCBI chr12:4,474,041...4,498,942
Ensembl chr12:4,474,958...4,498,910 		JBrowse link
G SERPINI1 serpin family I member 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:21,610,545...21,696,611
Ensembl chr15:21,610,791...21,645,701 		JBrowse link
synaptic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PENK proenkephalin is_active_in ISO PMID:8847409 SynGO PMID:8847409 RGD:13702175 NCBI chr 8:52,458,113...52,463,933
Ensembl chr 8:52,457,904...52,463,859 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 17898
    cellular anatomical structure 17793
      membrane-enclosed lumen 4648
        organelle lumen 4648
          vesicle lumen 18
            cytoplasmic vesicle lumen + 16
            multivesicular body, internal vesicle lumen 1
Path 2
Term Annotations click to browse term
  cellular_component 17898
    cellular anatomical structure 17793
      organelle 13138
        membrane-bounded organelle 11894
          vesicle 2067
            vesicle lumen 18
              cytoplasmic vesicle lumen + 16
              multivesicular body, internal vesicle lumen 1
paths to the root