Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:cytoplasmic vesicle lumen
go back to main search page
Accession:GO:0060205 term browser browse the term
Definition:The volume enclosed by a cytoplasmic vesicle.
Synonyms:related_synonym: cytoplasmic membrane-bounded vesicle lumen;   cytoplasmic membrane-enclosed vesicle lumen



show annotations for term's descendants           Sort by:
 
cytoplasmic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:152,398,745...152,422,854
Ensembl chr 3:152,398,747...152,447,088
JBrowse link
G Faslg Fas ligand located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:74,151,519...74,172,760
Ensembl chr13:74,154,954...74,162,215
JBrowse link
G Lcn2 lipocalin 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:15,680,688...15,684,033
Ensembl chr 3:15,680,687...15,684,095
JBrowse link
G Serpini1 serpin family I member 1 located_in ISS
ISO
GO_REF:0000024
(PMID:17040209)
UniProt
RGD
PMID:17040209 GO_REF:0000024 NCBI chr 2:160,346,403...160,433,135
Ensembl chr 2:160,346,758...160,433,135
JBrowse link
acrosomal lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata31a5 SPATA31 subfamily A member 5 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:243,648...249,434
Ensembl chr17:243,654...249,434
JBrowse link
G Zp3r zona pellucida 3 receptor located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:42,019,998...42,064,836
Ensembl chr13:42,020,018...42,064,812
JBrowse link
azurophil granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prss57 serine protease 57 located_in ISS
ISO
GO_REF:0000024
(PMID:23904161)
UniProt
RGD
PMID:23904161 GO_REF:0000024 NCBI chr 7:9,915,667...9,922,996
Ensembl chr 7:9,917,484...9,922,922
JBrowse link
G Prtn3 proteinase 3 located_in ISO (PMID:18462208) RGD PMID:18462208 NCBI chr 7:9,822,123...9,831,300
Ensembl chr 7:9,822,122...9,831,944
JBrowse link
chromaffin granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbh dopamine beta-hydroxylase located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:10,488,260...10,505,245
Ensembl chr 3:10,488,260...10,505,248
JBrowse link
G Penk proenkephalin located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:17,183,799...17,189,160
Ensembl chr 5:17,183,806...17,189,129
JBrowse link
neuronal dense core vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdyn prodynorphin part_of
is_active_in
IDA PMID:7911809 SynGO PMID:7911809 PMID:7911809 RGD:13702229, RGD:13702229 NCBI chr 3:116,900,990...116,913,334
Ensembl chr 3:116,900,992...116,913,334
JBrowse link
G Penk proenkephalin part_of
is_active_in
IDA PMID:8847409 SynGO PMID:8847409 PMID:8847409 RGD:13702175, RGD:13702175 NCBI chr 5:17,183,799...17,189,160
Ensembl chr 5:17,183,806...17,189,129
JBrowse link
G Vps13a vacuolar protein sorting 13 homolog A located_in ISO (MGI:5316152|PMID:22366033) RGD PMID:22366033 MGI:5316152 NCBI chr 1:213,901,999...214,128,638
Ensembl chr 1:213,901,999...214,128,555
JBrowse link
secretory granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbh dopamine beta-hydroxylase located_in ISO
ISS
(PMID:7961964)
(MGI:5785000|PMID:7961964)
GO_REF:0000024
RGD
UniProt
PMID:7961964 GO_REF:0000024 MGI:5785000 NCBI chr 3:10,488,260...10,505,245
Ensembl chr 3:10,488,260...10,505,248
JBrowse link
G Grp gastrin releasing peptide located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr18:59,388,679...59,402,061
Ensembl chr18:59,388,274...59,402,061
JBrowse link
G Pcsk1 proprotein convertase subtilisin/kexin type 1 located_in TAS Reactome:R-NUL-9023165 Reactome Reactome:R-NUL-9023165 NCBI chr 2:4,395,543...4,442,434
Ensembl chr 2:4,395,543...4,442,434
JBrowse link
G Pcsk2 proprotein convertase subtilisin/kexin type 2 located_in TAS Reactome:R-NUL-9023180 Reactome Reactome:R-NUL-9023180 NCBI chr 3:130,880,422...131,183,127
Ensembl chr 3:130,880,422...131,183,127
JBrowse link
G Serpini1 serpin family I member 1 located_in ISO (MGI:3699790|PMID:17040209) RGD PMID:17040209 MGI:3699790 NCBI chr 2:160,346,403...160,433,135
Ensembl chr 2:160,346,758...160,433,135
JBrowse link
synaptic vesicle lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Penk proenkephalin part_of
is_active_in
IDA PMID:8847409 SynGO PMID:8847409 PMID:8847409 RGD:13702175, RGD:13702175 NCBI chr 5:17,183,799...17,189,160
Ensembl chr 5:17,183,806...17,189,129
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19896
    cellular anatomical entity 19599
      cytoplasm 11289
        cytoplasmic vesicle 1915
          cytoplasmic vesicle lumen 15
            COPI-coated vesicle lumen 0
            COPII-coated vesicle lumen 0
            Golgi-associated vesicle lumen 0
            aleurone grain lumen 0
            clathrin-sculpted acetylcholine transport vesicle lumen 0
            clathrin-sculpted gamma-aminobutyric acid transport vesicle lumen 0
            clathrin-sculpted glutamate transport vesicle lumen 0
            clathrin-sculpted monoamine transport vesicle lumen 0
            cytolytic granule lumen 0
            esterosome lumen 0
            melanosome lumen 0
            phagolysosome vesicle lumen 0
            plasma membrane-derived thylakoid lumen 0
            secretory granule lumen + 12
            spine apparatus lumen 0
            synaptic vesicle lumen 1
            transport vesicle lumen + 0
Path 2
Term Annotations click to browse term
  cellular_component 19896
    cellular anatomical entity 19599
      organelle 13017
        intracellular organelle 12666
          intracellular membrane-bounded organelle 11161
            intracellular vesicle 1919
              cytoplasmic vesicle 1915
                cytoplasmic vesicle lumen 15
                  COPI-coated vesicle lumen 0
                  COPII-coated vesicle lumen 0
                  Golgi-associated vesicle lumen 0
                  aleurone grain lumen 0
                  clathrin-sculpted acetylcholine transport vesicle lumen 0
                  clathrin-sculpted gamma-aminobutyric acid transport vesicle lumen 0
                  clathrin-sculpted glutamate transport vesicle lumen 0
                  clathrin-sculpted monoamine transport vesicle lumen 0
                  cytolytic granule lumen 0
                  esterosome lumen 0
                  melanosome lumen 0
                  phagolysosome vesicle lumen 0
                  plasma membrane-derived thylakoid lumen 0
                  secretory granule lumen + 12
                  spine apparatus lumen 0
                  synaptic vesicle lumen 1
                  transport vesicle lumen + 0
paths to the root