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ONTOLOGY REPORT - ANNOTATIONS

Term:chromocenter
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Accession:GO:0010369 term browser browse the term
Definition:A region in which centric, heterochromatic portions from more than one chromosomes form a compact structure.


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chromocenter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aurkb aurora kinase B located_in ISO (PMID:19283064) RGD PMID:19283064 NCBI chr10:53,744,290...53,750,831
Ensembl chr10:53,745,142...53,750,837 		JBrowse link
G Cbx1 chromobox 1 located_in ISO (PMID:15322135), (PMID:17261847) RGD PMID:15322135 PMID:17261847 NCBI chr10:81,770,307...81,789,981
Ensembl chr10:81,770,342...81,791,096 		JBrowse link
G Cbx3 chromobox 3 located_in ISO (PMID:15322135) RGD PMID:15322135 NCBI chr 4:80,545,450...80,559,284
Ensembl chr 4:80,546,010...80,559,283 		JBrowse link
G Cbx5 chromobox 5 located_in ISO (PMID:17284516), (PMID:20219459), (PMID:22101327) RGD PMID:17284516 PMID:20219459 PMID:22101327 NCBI chr 7:134,333,165...134,376,102
Ensembl chr 7:134,331,335...134,375,022 		JBrowse link
G Cdca8 cell division cycle associated 8 located_in ISO (PMID:19283064) RGD PMID:19283064 NCBI chr 5:137,176,414...137,198,686
Ensembl chr 5:137,176,417...137,198,629 		JBrowse link
G Esco2 establishment of sister chromatid cohesion N-acetyltransferase 2 located_in ISO (PMID:22101327) RGD PMID:22101327 NCBI chr15:40,034,566...40,052,295
Ensembl chr15:40,034,568...40,055,306 		JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 located_in ISS
ISO		 GO_REF:0000024
(PMID:24813610)		 UniProt
RGD		 PMID:24813610 GO_REF:0000024 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:19283064) RGD PMID:19283064 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265 		JBrowse link
G Mbd5 methyl-CpG binding domain protein 5 located_in
is_active_in		 ISO
IBA		 (PMID:20700456)
GO_REF:0000033		 RGD
GO_Central		 PMID:20700456 GO_REF:0000033 NCBI chr 3:33,588,854...33,738,730
Ensembl chr 3:33,333,554...33,730,156 		JBrowse link
G Mbd6 methyl-CpG binding domain protein 6 located_in
is_active_in		 ISO
IBA		 (PMID:20700456)
GO_REF:0000033		 RGD
GO_Central		 PMID:20700456 GO_REF:0000033 NCBI chr 7:63,107,562...63,115,841
Ensembl chr 7:63,107,562...63,113,274 		JBrowse link
G Oip5 Opa interacting protein 5 located_in ISO (PMID:17284516) RGD PMID:17284516 NCBI chr 3:106,593,746...106,603,281
Ensembl chr 3:106,593,760...106,603,250 		JBrowse link
G Sall1 spalt-like transcription factor 1 located_in ISO (PMID:16443351) RGD PMID:16443351 NCBI chr19:18,005,782...18,022,705
Ensembl chr19:18,007,503...18,022,705 		JBrowse link
G Scmh1 Scm polycomb group protein homolog 1 located_in ISO (PMID:17215307) RGD PMID:17215307 NCBI chr 5:133,991,167...134,115,893
Ensembl chr 5:133,990,520...134,122,105 		JBrowse link
G Sox30 SRY-box transcription factor 30 located_in ISO (PMID:29848638) RGD PMID:29848638 NCBI chr10:30,417,499...30,446,441
Ensembl chr10:30,418,473...30,446,453 		JBrowse link
G Taf7l TATA-box binding protein associated factor 7-like NOT|located_in ISO (PMID:12665565) RGD PMID:12665565 NCBI chr  X:97,660,222...97,675,241
Ensembl chr  X:97,660,222...97,675,023 		JBrowse link
G Trim66 tripartite motif-containing 66 located_in ISO (PMID:15322135) RGD PMID:15322135 NCBI chr 1:163,468,944...163,539,633
Ensembl chr 1:163,470,350...163,537,185 		JBrowse link
perinucleolar chromocenter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Piwil2 piwi-like RNA-mediated gene silencing 2 located_in ISO (PMID:21539824) RGD PMID:21539824 NCBI chr15:45,431,402...45,498,034
Ensembl chr15:45,431,703...45,497,702 		JBrowse link
G Tinf2 TERF1 interacting nuclear factor 2 located_in ISO (PMID:15741234) RGD PMID:15741234 NCBI chr15:29,170,663...29,178,015
Ensembl chr15:29,170,652...29,176,984 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20827
    cellular anatomical structure 20627
      organelle 13970
        membraneless organelle 5266
          intracellular membraneless organelle 5266
            chromocenter 18
              perinucleolar chromocenter 2
              polytene chromosome chromocenter + 0
paths to the root