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ONTOLOGY REPORT - ANNOTATIONS

Term:U12-type spliceosomal complex
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Accession:GO:0005689 term browser browse the term
Definition:Any spliceosomal complex that forms during the splicing of a messenger RNA primary transcript to excise an intron; the series of U12-type spliceosomal complexes is involved in the splicing of the majority of introns that contain atypical AT-AC terminal dinucleotides, as well as other non-canonical introns. The entire splice site signal, not just the terminal dinucleotides, is involved in determining which spliceosome utilizes the site.
Synonyms:exact_synonym: minor (U12-type) spliceosomal complex;   minor spliceosomal complex
 narrow_synonym: AT-AC spliceosomal complex
 xref: Wikipedia:Minor_spliceosome
 never_in_taxon: NCBITaxon:4890 ! Ascomycota


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U12-type spliceosomal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHX15 DEAH-box helicase 15 part_of IEA Ensembl GO_REF:0000107 NCBI chr 4:18,931,119...18,988,048
Ensembl chr 4:24,217,123...24,273,585 		JBrowse link
G LOC100974064 small nuclear ribonucleoprotein E part_of IEA Ensembl GO_REF:0000107 NCBI chr 9:67,731,954...67,732,434
Ensembl chr 1:183,755,392...183,764,937 		JBrowse link
G LOC112438910 small nuclear ribonucleoprotein G-like part_of IEA TreeGrafter GO_REF:0000118 NCBI chr2A:92,387,747...92,388,314 JBrowse link
G LOC117976953 small nuclear ribonucleoprotein G-like part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 1:180,958,983...180,959,816 JBrowse link
G LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IEA TreeGrafter GO_REF:0000118 NCBI chr19:1,330,469...1,337,610
Ensembl chr19:2,302,280...2,313,255 		JBrowse link
G PDCD7 programmed cell death 7 part_of ISO (PMID:15146077) HGNC-UCL PMID:15146077 NCBI chr15:44,057,667...44,073,812 JBrowse link
G PHF5A PHD finger protein 5A part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:22,353,811...22,362,899
Ensembl chr22:40,441,275...40,450,174 		JBrowse link
G RBM41 RNA binding motif protein 41 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr  X:96,163,094...96,218,210
Ensembl chr  X:106,544,087...106,595,768 		JBrowse link
G RNPC3 RNA binding region (RNP1, RRM) containing 3 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:106,189,351...106,219,302
Ensembl chr 1:105,323,791...105,349,892 		JBrowse link
G SF3B1 splicing factor 3b subunit 1 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:84,633,272...84,678,602
Ensembl chr2B:202,530,200...202,573,346 		JBrowse link
G SF3B2 splicing factor 3b subunit 2 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:61,416,764...61,433,334
Ensembl chr11:64,743,629...64,759,772 		JBrowse link
G SF3B3 splicing factor 3b subunit 3 part_of IEA Ensembl GO_REF:0000107 NCBI chr16:54,442,510...54,490,950
Ensembl chr16:70,361,068...70,410,042 		JBrowse link
G SF3B4 splicing factor 3b subunit 4 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:125,268,113...125,273,405
Ensembl chr 1:128,924,317...128,929,610 		JBrowse link
G SF3B5 splicing factor 3b subunit 5 part_of IEA Ensembl GO_REF:0000107 NCBI chr 6:141,873,848...141,874,584
Ensembl chr 6:146,594,201...146,594,461 		JBrowse link
G SF3B6 splicing factor 3b subunit 6 part_of IEA Ensembl GO_REF:0000107 NCBI chr2A:24,065,640...24,074,512
Ensembl chr2A:24,162,976...24,172,040 		JBrowse link
G SNRNP25 small nuclear ribonucleoprotein U11/U12 subunit 25 part_of IEA TreeGrafter GO_REF:0000118 Ensembl chr16:43,986...48,418 JBrowse link
G SNRNP35 small nuclear ribonucleoprotein U11/U12 subunit 35 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:121,053,065...121,061,851
Ensembl chr12:125,282,666...125,290,266 		JBrowse link
G SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 part_of IEA Ensembl GO_REF:0000107 NCBI chr 6:7,430,029...7,451,750
Ensembl chr 6:7,712,986...7,734,669 		JBrowse link
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 part_of IEA Ensembl GO_REF:0000107 NCBI chr20:2,571,393...2,580,642
Ensembl chr20:2,335,499...2,344,763 		JBrowse link
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr18:14,851,041...14,869,042
Ensembl chr18:18,488,929...18,506,284 		JBrowse link
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide part_of IEA Ensembl GO_REF:0000107 NCBI chr19:42,692,963...42,697,512
Ensembl chr19:51,230,822...51,235,661 		JBrowse link
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:5,361,886...5,378,465
Ensembl chr22:22,227,328...22,246,676 		JBrowse link
G SNRPE small nuclear ribonucleoprotein polypeptide E part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:179,466,263...179,474,779
Ensembl chr 1:183,755,392...183,764,937 		JBrowse link
G SNRPF small nuclear ribonucleoprotein polypeptide F part_of ISO (PMID:15146077) UniProt PMID:15146077 NCBI chr12:93,452,446...93,459,691
Ensembl chr12:96,841,638...96,886,039 		JBrowse link
G SNRPG small nuclear ribonucleoprotein polypeptide G part_of IEA TreeGrafter GO_REF:0000118 NCBI chr2A:70,335,547...70,347,970
Ensembl chr2A:71,451,225...71,463,884 		JBrowse link
G YBX1 Y-box binding protein 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:41,982,365...42,002,430
Ensembl chr 1:43,360,052...43,380,313 		JBrowse link
G ZCRB1 zinc finger CCHC-type and RNA binding motif containing 1 part_of IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr12:46,392,094...46,405,453
Ensembl chr12:47,256,625...47,271,832 		JBrowse link
G ZMAT5 zinc finger matrin-type 5 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:10,774,446...10,810,609
Ensembl chr22:28,580,010...28,615,498 		JBrowse link
G ZRSR2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 part_of IEA Ensembl GO_REF:0000107 NCBI chr  X:8,413,483...8,447,340
Ensembl chr  X:15,772,064...15,804,913 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 17180
    protein-containing complex 5905
      nuclear protein-containing complex 1236
        spliceosomal complex 204
          U12-type spliceosomal complex 29
            U12-type catalytic step 1 spliceosome 0
            U12-type catalytic step 2 spliceosome 0
            U12-type post-mRNA release spliceosomal complex 0
            U12-type post-spliceosomal complex 0
            U12-type precatalytic spliceosome 0
            U12-type prespliceosome 0
Path 2
Term Annotations click to browse term
  cellular_component 17180
    cellular anatomical entity 16965
      organelle 12494
        membrane-bounded organelle 11400
          intracellular membrane-bounded organelle 10860
            nucleus 6800
              nuclear protein-containing complex 1236
                spliceosomal complex 204
                  U12-type spliceosomal complex 29
                    U12-type catalytic step 1 spliceosome 0
                    U12-type catalytic step 2 spliceosome 0
                    U12-type post-mRNA release spliceosomal complex 0
                    U12-type post-spliceosomal complex 0
                    U12-type precatalytic spliceosome 0
                    U12-type prespliceosome 0
paths to the root