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ONTOLOGY REPORT - ANNOTATIONS

Term:transcription factor TFIID complex
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Accession:GO:0005669 term browser browse the term
Definition:A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters.

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transcription factor TFIID complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chrNW_004624907:2,249,323...2,263,999
Ensembl chrNW_004624907:2,250,133...2,263,947 		JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chrNW_004624732:13,730,648...13,776,886
Ensembl chrNW_004624732:13,729,947...13,776,870 		JBrowse link
G Gtf2a1 general transcription factor IIA subunit 1 part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chrNW_004624734:20,795,550...20,830,602
Ensembl chrNW_004624734:20,795,474...20,831,234 		JBrowse link
G Gtf2a2 general transcription factor IIA subunit 2 part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chrNW_004624781:12,498,057...12,510,701
Ensembl chrNW_004624781:12,498,702...12,512,810 		JBrowse link
G Gtf2b general transcription factor IIB part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chrNW_004624742:8,687,002...8,721,505
Ensembl chrNW_004624742:8,686,537...8,723,399 		JBrowse link
G Gtf2e1 general transcription factor IIE subunit 1 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004624731:27,453,525...27,484,844
Ensembl chrNW_004624731:27,453,531...27,484,819 		JBrowse link
G Gtf2e2 general transcription factor IIE subunit 2 part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chrNW_004624839:7,248,183...7,328,582
Ensembl chrNW_004624839:7,247,596...7,329,480 		JBrowse link
G Gtf2f1 general transcription factor IIF subunit 1 part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chrNW_004624828:3,512,990...3,521,848
Ensembl chrNW_004624828:3,513,027...3,521,650 		JBrowse link
G Gtf2h2 general transcription factor IIH subunit 2 part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chrNW_004624905:395,922...421,203 JBrowse link
G Gtf2h3 general transcription factor IIH subunit 3 part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chrNW_004624747:23,422,289...23,437,193
Ensembl chrNW_004624747:23,422,319...23,435,926 		JBrowse link
G Gtf2h4 general transcription factor IIH subunit 4 part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chrNW_004624754:24,871,006...24,876,957
Ensembl chrNW_004624754:24,871,008...24,877,436 		JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chrNW_004624785:70,425...82,098
Ensembl chrNW_004624785:69,978...82,012 		JBrowse link
G LOC101708811 transcription initiation factor TFIID subunit 9 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:39,961,692...39,962,820 JBrowse link
G Taf1 TATA-box binding protein associated factor 1 part_of IEA TreeGrafter
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624903:1,698,201...1,774,607 JBrowse link
G Taf10 TATA-box binding protein associated factor 10 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624817:8,103,065...8,104,435
Ensembl chrNW_004624817:8,103,065...8,104,420 		JBrowse link
G Taf11 TATA-box binding protein associated factor 11 part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624754:22,463,406...22,471,197
Ensembl chrNW_004624754:22,463,441...22,471,192 		JBrowse link
G Taf12 TATA-box binding protein associated factor 12 part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624764:12,401,152...12,444,978
Ensembl chrNW_004624764:12,396,938...12,445,681 		JBrowse link
G Taf13 TATA-box binding protein associated factor 13 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624772:4,829,110...4,841,661
Ensembl chrNW_004624772:4,827,514...4,841,646 		JBrowse link
G Taf2 TATA-box binding protein associated factor 2 part_of IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624763:17,801,835...17,907,538
Ensembl chrNW_004624763:17,806,280...17,907,547 		JBrowse link
G Taf3 TATA-box binding protein associated factor 3 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624775:2,791,406...2,958,886
Ensembl chrNW_004624775:2,791,610...2,959,236 		JBrowse link
G Taf4 TATA-box binding protein associated factor 4 part_of IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624741:27,881,850...27,948,543
Ensembl chrNW_004624741:27,883,183...27,909,304 		JBrowse link
G Taf4b TATA-box binding protein associated factor 4b part_of IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624770:5,955,159...6,163,060
Ensembl chrNW_004624770:6,031,028...6,162,937 		JBrowse link
G Taf5 TATA-box binding protein associated factor 5 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624831:2,608,972...2,625,036
Ensembl chrNW_004624831:2,609,819...2,625,182 		JBrowse link
G Taf6 TATA-box binding protein associated factor 6 part_of IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624740:16,877,535...16,883,742
Ensembl chrNW_004624740:16,877,619...16,883,742 		JBrowse link
G Taf6l TATA-box binding protein associated factor 6 like part_of IEA InterPro GO_REF:0000002 NCBI chrNW_004624926:1,231,127...1,245,178
Ensembl chrNW_004624926:1,236,154...1,247,836 		JBrowse link
G Taf7 TATA-box binding protein associated factor 7 part_of IEA TreeGrafter
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624774:548,072...550,410
Ensembl chrNW_004624774:548,072...550,404 		JBrowse link
G Taf7l TATA-box binding protein associated factor 7 like part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624902:1,239,776...1,267,443
Ensembl chrNW_004624902:1,243,817...1,256,209 		JBrowse link
G Taf8 TATA-box binding protein associated factor 8 part_of IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624754:17,136,791...17,147,991
Ensembl chrNW_004624754:17,135,101...17,147,982 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624905:240,760...244,656
Ensembl chrNW_004624905:240,760...244,656 		JBrowse link
G Taf9b TATA-box binding protein associated factor 9b part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624836:2,623,924...2,636,330
Ensembl chrNW_004624836:2,623,209...2,635,133 		JBrowse link
G Tbp TATA-box binding protein part_of ISO (PMID:14580349), (PMID:27007846), (PMID:27193682), (PMID:29111974), (PMID:7729427)
(PMID:23332750)
(PMID:28893950)		 RGD
UniProt
ComplexPortal
MGI		 PMID:7729427 PMID:7980586 PMID:14580349 PMID:23332750 PMID:27007846 More... RGD:2306552 NCBI chrNW_004624850:6,359,382...6,375,391
Ensembl chrNW_004624850:6,359,418...6,375,391 		JBrowse link
G Tcea1 transcription elongation factor A1 part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chrNW_004624735:1,637,453...1,700,839
Ensembl chrNW_004624735:1,637,465...1,704,154 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18616
    cellular anatomical structure 18483
      nucleoplasm 3438
        RNA polymerase II, holoenzyme 66
          transcription factor TFIID complex 32
            TAF4B-containing transcription factor TFIID complex 0
Path 2
Term Annotations click to browse term
  cellular_component 18616
    cellular anatomical structure 18483
      organelle 13114
        membrane-bounded organelle 12018
          intracellular membrane-bounded organelle 11499
            nucleus 7392
              nuclear protein-containing complex 1750
                nuclear DNA-directed RNA polymerase complex 90
                  RNA polymerase II, holoenzyme 66
                    transcription factor TFIID complex 32
                      TAF4B-containing transcription factor TFIID complex 0
paths to the root