Taf7l (TATA-box binding protein associated factor 7 like) - Rat Genome Database

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Gene: Taf7l (TATA-box binding protein associated factor 7 like) Heterocephalus glaber
Analyze
Symbol: Taf7l
Name: TATA-box binding protein associated factor 7 like
RGD ID: 18902925
Description: ENCODES a protein that exhibits RNA polymerase II general transcription initiation factor activity (inferred); translation initiation factor activity (inferred); INVOLVED IN flagellated sperm motility (ortholog); spermatid development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); developmental and epileptic encephalopathy 9 (ortholog); Fabry disease (ortholog); FOUND IN chromocenter (ortholog); cytoplasm (ortholog); male germ cell nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcription initiation factor TFIID subunit 7-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249021,243,817 - 1,256,209 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249021,239,776 - 1,267,443 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Taf7l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249021,243,817 - 1,256,209 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249021,239,776 - 1,267,443 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TAF7L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X101,268,257 - 101,293,083 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX101,268,253 - 101,293,057 (-)EnsemblGRCh38hg38GRCh38
GRCh37X100,523,245 - 100,548,071 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X100,409,897 - 100,434,701 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X100,329,386 - 100,354,190NCBI
CeleraX101,042,015 - 101,067,533 (-)NCBICelera
Cytogenetic MapXq22.1NCBI
HuRefX90,326,711 - 90,351,477 (-)NCBIHuRef
CHM1_1X100,417,044 - 100,441,569 (-)NCBICHM1_1
T2T-CHM13v2.0X99,712,369 - 99,751,819 (-)NCBIT2T-CHM13v2.0
Taf7l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X133,360,865 - 133,377,254 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX133,360,867 - 133,377,239 (-)EnsemblGRCm39 Ensembl
GRCm38X134,460,116 - 134,476,505 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX134,460,118 - 134,476,490 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X130,994,655 - 131,011,029 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X129,806,469 - 129,822,644 (-)NCBIMGSCv36mm8
CeleraX117,338,620 - 117,355,092 (-)NCBICelera
Cytogenetic MapXE3NCBI
cM MapX56.18NCBI
Taf7l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X101,953,508 - 101,968,336 (-)NCBIGRCr8
mRatBN7.2X97,660,222 - 97,675,241 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX97,660,222 - 97,675,023 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX99,334,442 - 99,349,219 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X102,844,839 - 102,859,624 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X100,347,599 - 100,362,376 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X105,292,338 - 105,308,554 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX105,292,338 - 105,308,554 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X105,183,229 - 105,199,248 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X121,935,672 - 121,950,719 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX98,701,715 - 98,716,468 (-)NCBICelera
Cytogenetic MapXq32NCBI
Taf7l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555037,429,876 - 7,451,051 (-)NCBIChiLan1.0ChiLan1.0
TAF7L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X100,868,104 - 100,897,866 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X100,871,714 - 100,897,257 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X90,471,354 - 90,496,618 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X100,607,488 - 100,631,301 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX100,607,488 - 100,631,301 (-)Ensemblpanpan1.1panPan2
TAF7L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X75,219,448 - 75,238,309 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX75,220,248 - 75,239,041 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X76,642,213 - 76,661,089 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX76,642,205 - 76,661,681 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X74,203,965 - 74,222,831 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X75,864,367 - 75,883,225 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X75,626,775 - 75,645,651 (-)NCBIUU_Cfam_GSD_1.0
Taf7l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X63,096,626 - 63,134,131 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936813357,571 - 372,736 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936813357,571 - 378,479 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF7L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX82,930,266 - 82,951,224 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X82,930,258 - 82,951,065 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X90,962,646 - 90,983,465 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAF7L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X89,610,238 - 89,636,238 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX89,611,208 - 89,635,921 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606514,526,792 - 14,552,570 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000012723   ⟹   ENSHGLP00000012586
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249021,243,817 - 1,256,209 (+)Ensembl
RefSeq Acc Id: XM_021250486   ⟹   XP_021106145
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249021,239,776 - 1,267,443 (+)NCBI
RefSeq Acc Id: XM_021250487   ⟹   XP_021106146
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249021,240,650 - 1,267,443 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021106145 (Get FASTA)   NCBI Sequence Viewer  
  XP_021106146 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012586
  ENSHGLP00100052356
Reference Protein Sequences
RefSeq Acc Id: XP_021106145   ⟸   XM_021250486
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021106146   ⟸   XM_021250487
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000012586   ⟸   ENSHGLT00000012723


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008998 Ensembl, UniProtKB/TrEMBL
  ENSHGLG00100034556 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000012723 UniProtKB/TrEMBL
  ENSHGLT00100049148 UniProtKB/TrEMBL
InterPro TAF7 UniProtKB/TrEMBL
  TAFII55_prot_cons_reg UniProtKB/TrEMBL
NCBI Gene Taf7l ENTREZGENE
PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATED UniProtKB/TrEMBL
  TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 7-LIKE UniProtKB/TrEMBL
Pfam TAFII55_N UniProtKB/TrEMBL
SMART TAFII55_N UniProtKB/TrEMBL
UniProt G5C2S4_HETGA UniProtKB/TrEMBL