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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA polymerase II, holoenzyme
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Accession:GO:0016591 term browser browse the term
Definition:A nuclear DNA-directed RNA polymerase complex containing an RNA polymerase II core enzyme as well as additional proteins and transcription factor complexes, that are capable of promoter recognition and transcription initiation from an RNA polymerase II promoter in vivo. These additional components may include general transcription factor complexes TFIIA, TFIID, TFIIE, TFIIF, or TFIIH, as well as Mediator, SWI/SNF, GCN5, or SRBs and confer the ability to recognize promoters.
Synonyms:exact_synonym: DNA-directed RNA polymerase II, holoenzyme



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RNA polymerase II, holoenzyme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07043557.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:22,481,952...22,483,036 JBrowse link
G Myo6 myosin VI part_of ISO (PMID:16949370) RGD PMID:16949370 NCBI chr 8:81,087,157...81,242,022
Ensembl chr 8:81,087,139...81,239,292
JBrowse link
G Myzap myocardial zonula adherens protein part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:72,155,817...72,243,036
Ensembl chr 8:72,131,530...72,243,036
JBrowse link
G Polr2m RNA polymerase II subunit M part_of IEA
IBA
ISS
ISO
GO_REF:0000002
PMID:21873635
GO_REF:0000024
(PMID:22231121)
InterPro
UniProt
RGD
PMID:22231121 PMID:21873635 GO_REF:0000002 GO_REF:0000024, RGD:13792537 NCBI chr 8:72,131,992...72,139,423
Ensembl chr 8:72,131,530...72,243,036
JBrowse link
G Recql5 RecQ like helicase 5 part_of ISO (PMID:22231121) RGD PMID:22231121 NCBI chr10:101,126,544...101,165,739
Ensembl chr10:101,126,547...101,165,652
JBrowse link
G Rpap2 RNA polymerase II associated protein 2 part_of ISS
ISO
GO_REF:0000024
(PMID:22137580), (PMID:22231121)
UniProt
RGD
PMID:22137580 PMID:22231121 GO_REF:0000024 NCBI chr14:2,109,044...2,187,343
Ensembl chr14:2,109,053...2,187,350
JBrowse link
G Rprd1a regulation of nuclear pre-mRNA domain containing 1A part_of IBA
ISO
PMID:21873635
(PMID:22231121)
RGD PMID:22231121 PMID:21873635 RGD:13792537 NCBI chr18:15,791,418...15,839,338
Ensembl chr18:15,791,418...15,839,338
JBrowse link
G Rprd1b regulation of nuclear pre-mRNA domain containing 1B part_of ISO
IBA
(PMID:22231121)
PMID:21873635
RGD PMID:22231121 PMID:21873635 RGD:13792537 NCBI chr 3:146,682,975...146,729,251
Ensembl chr 3:146,682,922...146,786,452
JBrowse link
G Rprd2 regulation of nuclear pre-mRNA domain containing 2 part_of ISO
IBA
(PMID:22231121)
PMID:21873635
RGD PMID:22231121 PMID:21873635 RGD:13792537 NCBI chr 2:183,311,132...183,367,959
Ensembl chr 2:183,293,114...183,367,407
JBrowse link
Cdc73/Paf1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 part_of ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000107
PMID:21873635
(PMID:16307923), (PMID:18987311), (PMID:20178742)
UniProt
Ensembl
RGD
PMID:16307923 PMID:18987311 PMID:20178742 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component part_of ISO
IBA
(PMID:16307923), (PMID:20178742)
PMID:21873635
UniProtKB:Q8JZM7 (MGI:6203683|PMID:27749823)
RGD PMID:16307923 PMID:20178742 PMID:27749823 PMID:21873635 MGI:6203683, RGD:13792537 NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303
JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component part_of ISS
ISO
GO_REF:0000024
(PMID:16307923), (PMID:18987311), (PMID:20178742)
UniProt
RGD
PMID:16307923 PMID:18987311 PMID:20178742 GO_REF:0000024 NCBI chr 8:76,199,547...76,223,983
Ensembl chr 8:76,199,099...76,223,983
JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component part_of ISS
ISO
IBA
GO_REF:0000024
UniProtKB:Q8JZM7 (MGI:6203683|PMID:27749823)
(PMID:16307923), (PMID:20178742)
PMID:21873635
UniProt
RGD
PMID:16307923 PMID:20178742 PMID:27749823 PMID:21873635 GO_REF:0000024 MGI:6203683, RGD:13792537 NCBI chr 1:83,683,654...83,689,233
Ensembl chr 1:83,668,813...83,689,237
JBrowse link
G Pex2 peroxisomal biogenesis factor 2 part_of ISO (PMID:18987311) RGD PMID:18987311 NCBI chr 2:96,050,380...96,072,928
Ensembl chr 2:96,045,958...96,073,404
JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) part_of IBA
ISO
PMID:21873635
UniProtKB:Q8JZM7 (MGI:6203683|PMID:27749823)
(PMID:20178742)
RGD PMID:20178742 PMID:27749823 PMID:21873635 MGI:6203683, RGD:13792537 NCBI chr 3:106,659,363...106,718,970
Ensembl chr 3:106,659,308...106,718,970
JBrowse link
G Setd5 SET domain containing 5 part_of ISO (MGI:5812827|PMID:27864380) RGD PMID:27864380 MGI:5812827 NCBI chr 4:146,217,172...146,294,896
Ensembl chr 4:146,217,180...146,294,894
JBrowse link
G Wdr61 WD repeat domain 61 part_of ISO
IEA
IBA
ISS
(PMID:20178742)
GO_REF:0000107
PMID:21873635
UniProtKB:Q8JZM7 (MGI:6203683|PMID:27749823)
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:20178742 PMID:27749823 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:6203683, RGD:13792537 NCBI chr 8:55,103,542...55,120,837
Ensembl chr 8:55,103,545...55,120,813
JBrowse link
core TFIIH complex portion of holo TFIIH complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2h2 general transcription factor IIH subunit 2 part_of ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 2:31,623,752...31,652,697
Ensembl chr 2:31,624,678...31,652,592
JBrowse link
G Gtf2h3 general transcription factor IIH subunit 3 part_of ISO
ISS
(PMID:27193682)
GO_REF:0000024
RGD
UniProt
PMID:27193682 GO_REF:0000024 NCBI chr12:32,009,010...32,025,484
Ensembl chr12:32,009,014...32,025,497
JBrowse link
G Gtf2h4 general transcription factor 2H subunit 4 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr20:3,071,328...3,076,990
Ensembl chr20:3,071,328...3,076,984
JBrowse link
RNA polymerase II, core complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07006025.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07042789.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:8,335,702...8,335,905 JBrowse link
G AC109542.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:196,570,210...196,573,077 JBrowse link
G Polr2a RNA polymerase II subunit A part_of IBA
ISO
PMID:21873635
(PMID:9852112)
RGD PMID:9852112 PMID:21873635 RGD:13792537 NCBI chr10:54,452,438...54,478,486
Ensembl chr10:54,452,441...54,478,455
JBrowse link
G Polr2b RNA polymerase II subunit B part_of ISO
IBA
(PMID:9852112)
PMID:21873635
RGD PMID:9852112 PMID:21873635 RGD:13792537 NCBI chr14:30,797,228...30,834,916
Ensembl chr14:30,797,228...30,834,916
JBrowse link
G Polr2c RNA polymerase II subunit C part_of ISO
IBA
(PMID:9852112)
PMID:21873635
RGD PMID:9852112 PMID:21873635 PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr19:10,158,153...10,164,935
Ensembl chr19:10,157,823...10,164,945
JBrowse link
G Polr2d RNA polymerase II subunit D part_of ISO
IBA
(PMID:9528765), (PMID:9852112)
PMID:21873635
RGD PMID:9528765 PMID:9852112 PMID:21873635 RGD:13792537 NCBI chr18:23,418,097...23,425,228
Ensembl chr18:23,418,097...23,425,228
JBrowse link
G Polr2e RNA polymerase II, I and III subunit E part_of ISO
IBA
ISS
(PMID:9852112)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:9852112 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 7:9,666,695...9,670,638
Ensembl chr 7:9,666,716...9,670,643
JBrowse link
G Polr2f RNA polymerase II, I and III subunit F part_of TAS
IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:9852112)
UniProt
RGD
PMID:9852112 PMID:10393248 PMID:21873635 GO_REF:0000024, RGD:1299534, RGD:13792537 NCBI chr 7:110,712,528...110,724,234
Ensembl chr 7:110,712,572...110,724,234
JBrowse link
G Polr2g RNA polymerase II subunit G part_of IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:9852112)
UniProt
RGD
PMID:9852112 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:205,689,160...205,692,537
Ensembl chr 1:205,689,160...205,692,686
JBrowse link
G Polr2h RNA polymerase II, I and III subunit H part_of IBA
ISO
PMID:21873635
(PMID:9852112)
RGD PMID:9852112 PMID:21873635 RGD:13792537 NCBI chr11:80,192,017...80,197,468
Ensembl chr11:80,192,032...80,197,515
JBrowse link
G Polr2i RNA polymerase II subunit I part_of ISO
IBA
(PMID:9852112)
PMID:21873635
RGD PMID:9852112 PMID:21873635 RGD:13792537 NCBI chr 1:85,483,515...85,484,952
Ensembl chr 1:85,483,515...85,484,952
JBrowse link
G Polr2j RNA polymerase II subunit J part_of IBA
ISO
PMID:21873635
(MGI:86690|PMID:9099876)
(PMID:9852112)
RGD PMID:9099876 PMID:9852112 PMID:21873635 MGI:86690, RGD:13792537 NCBI chr12:20,543,038...20,548,590
Ensembl chr12:20,543,038...20,548,594
JBrowse link
G Polr2k RNA polymerase II, I and III subunit K part_of IBA
ISO
PMID:21873635
(PMID:9852112)
RGD PMID:9852112 PMID:21873635 RGD:13792537 NCBI chr 7:67,347,118...67,359,466
Ensembl chr 7:67,356,113...67,357,668
JBrowse link
G Polr2l RNA polymerase II, I and III subunit L part_of ISO (PMID:9852112) RGD PMID:9852112 NCBI chr 1:196,570,051...196,572,060 JBrowse link
G Polr2m RNA polymerase II subunit M part_of ISO UniProtKB:P19387|UniProtKB:P24928|UniProtKB:P30876 (PMID:30190596) RGD PMID:30190596 NCBI chr 8:72,131,992...72,139,423
Ensembl chr 8:72,131,530...72,243,036
JBrowse link
transcription factor TFIIA complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2a1 general transcription factor 2A subunit 1 part_of
located_in
ISO
IBA
(PMID:7724559)
(PMID:8626665)
(MGI:3583836|PMID:15927180)
PMID:21873635
RGD PMID:7724559 PMID:8626665 PMID:15927180 PMID:21873635 MGI:3583836, RGD:13792537 NCBI chr 6:110,488,891...110,521,059
Ensembl chr 6:110,488,931...110,521,511
JBrowse link
G Gtf2a1l general transcription factor 2A subunit 1 like part_of IBA
ISO
PMID:21873635
(MGI:3583836|PMID:15927180)
RGD PMID:15927180 PMID:21873635 MGI:3583836, RGD:13792537 NCBI chr 6:5,752,814...5,834,797
Ensembl chr 6:5,752,823...5,836,472
JBrowse link
G Gtf2a2 general transcription factor 2A subunit 2 part_of
located_in
ISO
IEA
IBA
(PMID:7724559), (PMID:7958899), (PMID:7958900)
(PMID:8626665)
GO_REF:0000002
PMID:21873635
RGD
InterPro
PMID:7724559 PMID:7958899 PMID:7958900 PMID:8626665 PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 8:70,662,395...70,675,576
Ensembl chr 8:70,662,428...70,675,569
JBrowse link
G LOC103695118 transcription initiation factor IIA subunit 2 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002
G Tbp TATA box binding protein part_of ISO (PMID:7724559) RGD PMID:7724559 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016
JBrowse link
G Tbpl1 TATA-box binding protein like 1 part_of ISO (MGI:3583836|PMID:15927180) RGD PMID:15927180 MGI:3583836 NCBI chr 1:22,777,892...22,803,305
Ensembl chr 1:22,778,459...22,803,122
Ensembl chr 1:22,778,459...22,803,122
JBrowse link
transcription factor TFIID complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063323.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:27,111,331...27,111,546 JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
JBrowse link
G Gtf2a1 general transcription factor 2A subunit 1 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr 6:110,488,891...110,521,059
Ensembl chr 6:110,488,931...110,521,511
JBrowse link
G Gtf2a2 general transcription factor 2A subunit 2 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr 8:70,662,395...70,675,576
Ensembl chr 8:70,662,428...70,675,569
JBrowse link
G Gtf2b general transcription factor IIB part_of ISO
IEA
(PMID:27193682)
GO_REF:0000107
RGD
Ensembl
PMID:27193682 GO_REF:0000107 NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651
JBrowse link
G Gtf2e1 general transcription factor IIE subunit 1 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr11:63,182,073...63,215,349
Ensembl chr11:63,182,349...63,213,942
JBrowse link
G Gtf2e2 general transcription factor IIE subunit 2 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr16:58,399,307...58,449,467
Ensembl chr16:58,399,107...58,449,371
JBrowse link
G Gtf2f1 general transcription factor IIF subunit 1 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr 9:1,844,027...1,853,455
Ensembl chr 9:1,843,901...1,853,423
JBrowse link
G Gtf2h3 general transcription factor IIH subunit 3 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr12:32,009,010...32,025,484
Ensembl chr12:32,009,014...32,025,497
JBrowse link
G Gtf2h4 general transcription factor 2H subunit 4 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr20:3,071,328...3,076,990
Ensembl chr20:3,071,328...3,076,984
JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 part_of ISO
IBA
(PMID:27193682)
PMID:21873635
RGD PMID:27193682 PMID:21873635 RGD:13792537 NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939
JBrowse link
G LOC120103497 general transcription factor IIH subunit 5-like part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:27,109,209...27,114,478
Ensembl chr 6:27,111,331...27,111,546
JBrowse link
G LOC690283 similar to TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor NOT|part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:59,890,127...59,892,594
Ensembl chr 1:59,890,278...59,891,258
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 part_of
located_in
ISO (PMID:14580349), (PMID:24927529), (PMID:25412659), (PMID:27007846), (PMID:29111974), (PMID:8625415)
(PMID:23332750)
RGD PMID:8625415 PMID:14580349 PMID:23332750 PMID:24927529 PMID:25412659 More... NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 part_of
located_in
ISO
IBA
(PMID:14580349), (PMID:15099517), (PMID:29111974), (PMID:7729427), (PMID:7923369)
(PMID:23332750)
PMID:21873635
RGD PMID:7729427 PMID:7923369 PMID:14580349 PMID:15099517 PMID:23332750 More... RGD:13792537 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376
JBrowse link
G Taf11 TATA-box binding protein associated factor 11 part_of
located_in
IBA
ISO
PMID:21873635
(PMID:23332750)
(PMID:14580349), (PMID:29111974), (PMID:7729427), (PMID:8670810)
RGD PMID:7729427 PMID:8670810 PMID:14580349 PMID:23332750 PMID:29111974 More... RGD:13792537 NCBI chr20:5,955,774...5,963,593
Ensembl chr20:5,955,777...5,961,905
JBrowse link
G Taf12 TATA-box binding protein associated factor 12 part_of
located_in
IBA
ISO
PMID:21873635
(PMID:23332750)
(PMID:14580349), (PMID:29111974)
RGD PMID:14580349 PMID:23332750 PMID:29111974 PMID:21873635 RGD:13792537 NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849
JBrowse link
G Taf13 TATA-box binding protein associated factor 13 part_of
located_in
ISO
IBA
(PMID:29111974), (PMID:7729427)
(PMID:23332750)
PMID:21873635
RGD PMID:7729427 PMID:23332750 PMID:29111974 PMID:21873635 RGD:13792537 NCBI chr 2:196,205,219...196,215,882
Ensembl chr 2:196,205,243...196,215,878
JBrowse link
G Taf2 TATA-box binding protein associated factor 2 part_of
located_in
IBA
ISO
PMID:21873635
(PMID:23332750)
(PMID:10409744), (PMID:14580349), (PMID:27007846), (PMID:29111974), (PMID:9774672)
RGD PMID:9774672 PMID:10409744 PMID:14580349 PMID:23332750 PMID:27007846 More... RGD:13792537 NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616
JBrowse link
G Taf3 TATA-box binding protein associated factor 3 part_of
located_in
ISO (PMID:11438666), (PMID:29111974)
(PMID:23332750)
RGD PMID:11438666 PMID:23332750 PMID:29111974 NCBI chr17:68,455,389...68,608,367
Ensembl chr17:68,423,909...68,608,367
JBrowse link
G Taf4 TATA-box binding protein associated factor 4 part_of
located_in
IBA
ISO
PMID:21873635
(PMID:23332750)
(PMID:14580349), (PMID:29111974)
RGD PMID:14580349 PMID:23332750 PMID:29111974 PMID:21873635 RGD:13792537 NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356
JBrowse link
G Taf4b TATA-box binding protein associated factor 4b part_of IBA
ISO
PMID:21873635
(PMID:29111974)
RGD PMID:29111974 PMID:21873635 RGD:13792537 NCBI chr18:5,952,737...6,086,408
Ensembl chr18:5,952,769...6,068,307
JBrowse link
G Taf5 TATA-box binding protein associated factor 5 part_of
located_in
IBA
ISO
PMID:21873635
(PMID:23332750)
(PMID:14580349), (PMID:29111974), (PMID:9045704)
RGD PMID:9045704 PMID:14580349 PMID:23332750 PMID:29111974 PMID:21873635 RGD:13792537 NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914
JBrowse link
G Taf5l TATA-box binding protein associated factor 5 like NOT|part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:51,991,704...52,011,001
Ensembl chr19:51,991,708...52,011,295
JBrowse link
G Taf6 TATA-box binding protein associated factor 6 part_of
located_in
ISO
IEA
IBA
(PMID:8262073)
(PMID:23332750)
(PMID:14580349), (PMID:27007846), (PMID:29111974)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:8262073 PMID:14580349 PMID:23332750 PMID:27007846 PMID:29111974 More... GO_REF:0000107, RGD:13792537 NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247
JBrowse link
G Taf6l TATA-box binding protein associated factor 6 like part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:205,672,147...205,684,721
Ensembl chr 1:205,672,149...205,684,655
JBrowse link
G Taf7 TATA-box binding protein associated factor 7 part_of
located_in
IBA
ISO
PMID:21873635
(PMID:23332750)
(PMID:14580349), (PMID:24927529), (PMID:25412659), (PMID:27007846), (PMID:29111974), (PMID:7824954)
(MGI:1342782|PMID:10438527)
RGD PMID:7824954 PMID:10438527 PMID:14580349 PMID:23332750 PMID:24927529 More... MGI:1342782, RGD:13792537 NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134
JBrowse link
G Taf7l TATA-box binding protein associated factor 7-like part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:97,660,222...97,675,241
Ensembl chr  X:97,660,222...97,675,023
JBrowse link
G Taf7l2 TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:51,763,259...51,764,401 JBrowse link
G Taf8 TATA-box binding protein associated factor 8 part_of
located_in
IBA
ISO
PMID:21873635
(PMID:23332750)
(PMID:14580349), (PMID:27007846), (PMID:29111974)
RGD PMID:14580349 PMID:23332750 PMID:27007846 PMID:29111974 PMID:21873635 RGD:13792537 NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717
JBrowse link
G Taf9 TATA-box binding protein associated factor 9 part_of
located_in
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:23332750)
(PMID:14580349), (PMID:15899866), (PMID:29111974)
Ensembl
RGD
PMID:14580349 PMID:15899866 PMID:23332750 PMID:29111974 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769
JBrowse link
G Taf9b TATA-box binding protein associated factor 9b part_of IBA
ISO
PMID:21873635
(PMID:15899866), (PMID:29111974)
RGD PMID:15899866 PMID:29111974 PMID:21873635 RGD:13792537 NCBI chr  X:71,289,290...71,300,142
Ensembl chr  X:71,289,290...71,300,604
JBrowse link
G Tbp TATA box binding protein located_in
part_of
IDA
ISO
(PMID:23332750)
(PMID:14580349), (PMID:27007846), (PMID:27193682), (PMID:29111974), (PMID:7729427)
RGD PMID:7729427 PMID:14580349 PMID:23332750 PMID:27007846 PMID:27193682 More... RGD:2306552 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016
JBrowse link
G Tcea1 transcription elongation factor A1 part_of ISO (PMID:27193682) RGD PMID:27193682 NCBI chr 5:14,631,454...14,668,769
Ensembl chr 5:14,631,454...14,668,745
JBrowse link
transcription factor TFIIE complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2e1 general transcription factor IIE subunit 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:63,182,073...63,215,349
Ensembl chr11:63,182,349...63,213,942
JBrowse link
G Gtf2e2 general transcription factor IIE subunit 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:58,399,307...58,449,467
Ensembl chr16:58,399,107...58,449,371
JBrowse link
transcription factor TFIIF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2f1 general transcription factor IIF subunit 1 part_of
located_in
IBA
ISO
PMID:21873635
(PMID:11183778)
RGD PMID:11183778 PMID:21873635 RGD:13792537 NCBI chr 9:1,844,027...1,853,455
Ensembl chr 9:1,843,901...1,853,423
JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 part_of
located_in
IEA
ISO
IBA
GO_REF:0000002
(PMID:11183778)
PMID:21873635
InterPro
RGD
PMID:11183778 PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253
JBrowse link
transcription factor TFIIH holo complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063323.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:27,111,331...27,111,546 JBrowse link
G Ccnh cyclin H part_of ISS
ISO
GO_REF:0000024
(PMID:9852112)
UniProt
RGD
PMID:9852112 GO_REF:0000024 NCBI chr 2:15,834,833...15,855,643
Ensembl chr 2:15,834,833...15,855,819
JBrowse link
G Cdk7 cyclin-dependent kinase 7 part_of IDA
ISO
ISS
(PMID:9852112)
GO_REF:0000024
RGD
UniProt
PMID:9852112 PMID:7553866 GO_REF:0000024, RGD:9590319 NCBI chr 2:31,840,545...31,865,447
Ensembl chr 2:31,840,558...31,865,383
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit part_of ISO (PMID:9852112) RGD PMID:9852112 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit part_of IBA
ISO
ISS
PMID:21873635
(PMID:9852112)
GO_REF:0000024
RGD
UniProt
PMID:9852112 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 IDA RGD PMID:7553866 RGD:9590319 NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253
JBrowse link
G Gtf2h1 general transcription factor IIH subunit 1 part_of IDA
ISO
IBA
(PMID:9852112)
PMID:21873635
RGD PMID:9852112 PMID:7553866 PMID:21873635 RGD:9590319, RGD:13792537 NCBI chr 1:97,321,401...97,349,455
Ensembl chr 1:97,321,394...97,349,455
JBrowse link
G Gtf2h2 general transcription factor IIH subunit 2 part_of IBA
ISS
PMID:21873635
GO_REF:0000024
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 2:31,623,752...31,652,697
Ensembl chr 2:31,624,678...31,652,592
JBrowse link
G Gtf2h3 general transcription factor IIH subunit 3 part_of ISO
ISS
IBA
(PMID:9852112)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:9852112 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr12:32,009,010...32,025,484
Ensembl chr12:32,009,014...32,025,497
JBrowse link
G Gtf2h4 general transcription factor 2H subunit 4 part_of ISO
IBA
(PMID:9852112)
PMID:21873635
RGD PMID:9852112 PMID:21873635 RGD:13792537 NCBI chr20:3,071,328...3,076,990
Ensembl chr20:3,071,328...3,076,984
JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939
JBrowse link
G LOC120103497 general transcription factor IIH subunit 5-like part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:27,109,209...27,114,478
Ensembl chr 6:27,111,331...27,111,546
JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase part_of ISO
IBA
(PMID:9852112)
PMID:21873635
RGD PMID:9852112 PMID:21873635 RGD:13792537 NCBI chr 6:91,814,703...91,971,945
Ensembl chr 6:91,814,749...91,970,744
JBrowse link
transcription factor TFIIK complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnh cyclin H part_of IBA
ISO
PMID:21873635
(PMID:8692841)
RGD PMID:8692841 PMID:21873635 RGD:13792537 NCBI chr 2:15,834,833...15,855,643
Ensembl chr 2:15,834,833...15,855,819
JBrowse link
G Cdk7 cyclin-dependent kinase 7 part_of IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:8692841)
Ensembl
RGD
PMID:8692841 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 2:31,840,545...31,865,447
Ensembl chr 2:31,840,558...31,865,383
JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase part_of ISO (PMID:8692841) RGD PMID:8692841 NCBI chr 6:91,814,703...91,971,945
Ensembl chr 6:91,814,749...91,970,744
JBrowse link
transcription factor TFTC complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kat2a lysine acetyltransferase 2A part_of ISO (PMID:10373431) RGD PMID:10373431 NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166
JBrowse link
G LOC690283 similar to TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:59,890,127...59,892,594
Ensembl chr 1:59,890,278...59,891,258
JBrowse link
G Supt3h SPT3 homolog, SAGA and STAGA complex component part_of ISO (PMID:10373431) RGD PMID:10373431 NCBI chr 9:15,878,296...16,206,768
Ensembl chr 9:15,868,287...16,206,706
JBrowse link
G Tada3 transcriptional adaptor 3 part_of ISO (PMID:10373431) RGD PMID:10373431 NCBI chr 4:146,510,213...146,521,975
Ensembl chr 4:146,510,246...146,521,590
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 part_of ISO (PMID:10373431), (PMID:9603525) RGD PMID:9603525 PMID:10373431 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376
JBrowse link
G Taf12 TATA-box binding protein associated factor 12 part_of ISO (PMID:9603525) RGD PMID:9603525 NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849
JBrowse link
G Taf2 TATA-box binding protein associated factor 2 part_of ISO (PMID:10373431) RGD PMID:10373431 NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616
JBrowse link
G Taf4 TATA-box binding protein associated factor 4 part_of ISO (PMID:10373431), (PMID:9603525) RGD PMID:9603525 PMID:10373431 NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356
JBrowse link
G Taf5 TATA-box binding protein associated factor 5 part_of ISO (PMID:10373431), (PMID:9603525) RGD PMID:9603525 PMID:10373431 NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914
JBrowse link
G Taf5l TATA-box binding protein associated factor 5 like part_of ISO (PMID:10373431) RGD PMID:10373431 NCBI chr19:51,991,704...52,011,001
Ensembl chr19:51,991,708...52,011,295
JBrowse link
G Taf6 TATA-box binding protein associated factor 6 part_of ISO
IEA
(PMID:9603525)
GO_REF:0000107
RGD
Ensembl
PMID:9603525 GO_REF:0000107 NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247
JBrowse link
G Taf7 TATA-box binding protein associated factor 7 part_of ISO (PMID:9603525) RGD PMID:9603525 NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134
JBrowse link
G Taf9 TATA-box binding protein associated factor 9 part_of ISO
IEA
IBA
(PMID:15899866)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:15899866 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769
JBrowse link
G Taf9b TATA-box binding protein associated factor 9b part_of ISO (PMID:15899866) RGD PMID:15899866 NCBI chr  X:71,289,290...71,300,142
Ensembl chr  X:71,289,290...71,300,604
JBrowse link
G Trrap transformation/transcription domain-associated protein part_of ISO (PMID:10373431) RGD PMID:10373431 NCBI chr12:9,738,006...9,827,708
Ensembl chr12:9,738,006...9,827,674
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20279
    cellular anatomical entity 19993
      nucleoplasm 3497
        RNA polymerase II, holoenzyme 80
          Cdc73/Paf1 complex 8
          RNA polymerase II, core complex 16
          transcription factor TFIIA complex 6
          transcription factor TFIID complex + 35
          transcription factor TFIIE complex 2
          transcription factor TFIIF complex 2
          transcription factor TFIIH holo complex + 13
          transcription factor TFTC complex 15
Path 2
Term Annotations click to browse term
  cellular_component 20279
    cellular anatomical entity 19993
      organelle 13277
        membrane-bounded organelle 11838
          intracellular membrane-bounded organelle 11359
            nucleus 7146
              nuclear protein-containing complex 1304
                nuclear DNA-directed RNA polymerase complex 105
                  RNA polymerase II, holoenzyme 80
                    Cdc73/Paf1 complex 8
                    RNA polymerase II, core complex 16
                    transcription factor TFIIA complex 6
                    transcription factor TFIID complex + 35
                    transcription factor TFIIE complex 2
                    transcription factor TFIIF complex 2
                    transcription factor TFIIH holo complex + 13
                    transcription factor TFTC complex 15
paths to the root