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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA-directed 5'-3' RNA polymerase activity
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Accession:GO:0003899 term browser browse the term
Definition:Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
Synonyms:narrow_synonym: DNA-directed RNA polymerase I activity;   DNA-directed RNA polymerase II activity;   DNA-directed RNA polymerase III activity;   RNA polymerase I activity;   RNA polymerase II activity;   RNA polymerase III activity
 broad_synonym: DNA-directed RNA polymerase activity;   transcriptase
 related_synonym: C RNA formation factors;   C ribonucleic acid formation factors;   DNA-dependent RNA nucleotidyltransferase activity;   DNA-dependent RNA polymerase activity;   DNA-dependent ribonucleate nucleotidyltransferase activity;   RNA nucleotidyltransferase (DNA-directed) activity;   deoxyribonucleic acid-dependent ribonucleic acid polymerase activity;   nucleoside-triphosphate:RNA nucleotidyltransferase (DNA-directed) activity
 alt_id: GO:0000129
 xref: EC:2.7.7.6;   MetaCyc:DNA-DIRECTED-RNA-POLYMERASE-RXN;   Reactome:R-HSA-9670149 "TERRA transcription";   Reactome:R-HSA-9697084 "Defective rpoB in Mtb RNAP transcribes RNA polyanion";   Reactome:R-HSA-9697085 "RNAP transcribes Mtb RNA polyanion";   reactome:R-HSA-111264 "Addition of nucleotides between position +11 and +30";   reactome:R-HSA-167113 "Addition of the fourth nucleotide on the nascent HIV-1 transcript: Second Transition";   reactome:R-HSA-167115 "Addition of nucleotides between position +11 and +30 on HIV-1 transcript";   reactome:R-HSA-167117 "Addition of nucleotides 10 and 11 on the growing HIV-1 transcript: Third Transition";   reactome:R-HSA-167121 "Addition of the third nucleotide on the nascent HIV-1 transcript";   reactome:R-HSA-167136 "Addition of nucleotides 5 through 9 on the growing HIV-1 transcript";   reactome:R-HSA-174425 "The primase component of DNA polymerase:primase synthesizes a 6-10 nucleotide RNA primer on the G strand of the telomere";   reactome:R-HSA-203901 "Pol II mediated transcription of microRNA genes";   reactome:R-HSA-427366 "Transcription of intergenic spacer of the rRNA gene";   reactome:R-HSA-5601926 "RNA polymerase II polymerizes primary piRNA transcript";   reactome:R-HSA-6781824 "Active RNA Pol II complex transcribes lesion-containing DNA template";   reactome:R-HSA-68913 "The primase component of DNA polymerase:primase synthesizes a 6-10 nucleotide RNA primer at the origin";   reactome:R-HSA-74986 "Elongation of pre-rRNA transcript";   reactome:R-HSA-75850 "Addition of the third nucleotide on the nascent transcript";   reactome:R-HSA-75869 "Addition of the fourth nucleotide on the Nascent Transcript: Second Transition";   reactome:R-HSA-75873 "Addition of Nucleotides 5 through 9 on the growing Transcript";   reactome:R-HSA-76576 "Addition of nucleotides 10 and 11 on the growing transcript: Third Transition"


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DNA-directed 5'-3' RNA polymerase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crcp CGRP receptor component enables ISO (PMID:12482973) UniProt PMID:12482973 NCBI chrNW_004955456:8,431,161...8,479,866
Ensembl chrNW_004955456:8,431,161...8,483,181
JBrowse link
G Polr1a RNA polymerase I subunit A contributes_to
enables
ISO (PMID:34671025), (PMID:36271492) RGD
UniProt
PMID:9422795 PMID:34671025 PMID:36271492 RGD:2312782 NCBI chrNW_004955424:1,507,935...1,595,068
Ensembl chrNW_004955424:1,508,037...1,593,108
JBrowse link
G Polr1b RNA polymerase I subunit B contributes_to
enables
ISO (PMID:34671025), (PMID:36271492) RGD
UniProt
PMID:9422795 PMID:34671025 PMID:36271492 RGD:2312782 NCBI chrNW_004955470:1,714,156...1,737,749
Ensembl chrNW_004955470:1,714,156...1,737,820
JBrowse link
G Polr2a RNA polymerase II subunit A enables ISO (PMID:23748380), (PMID:9852112) UniProt PMID:9852112 PMID:23748380 NCBI chrNW_004955467:9,423,540...9,447,530
Ensembl chrNW_004955467:9,421,256...9,447,530
JBrowse link
G Polr2b RNA polymerase II subunit B enables ISO (PMID:23748380), (PMID:9852112) UniProt PMID:9852112 PMID:23748380 NCBI chrNW_004955447:14,110,182...14,150,556
Ensembl chrNW_004955447:14,110,182...14,150,556
JBrowse link
G Polr3a RNA polymerase III subunit A enables ISO (PMID:34675218) UniProt PMID:34675218 NCBI chrNW_004955437:14,446,059...14,483,336
Ensembl chrNW_004955437:14,446,024...14,483,336
JBrowse link
G Polr3b RNA polymerase III subunit B enables ISO (PMID:34675218) UniProt PMID:34675218 NCBI chrNW_004955405:40,353,289...40,451,445
Ensembl chrNW_004955405:40,353,281...40,451,479
JBrowse link
G Polr3h RNA polymerase III subunit H enables ISO (PMID:12391170) UniProt PMID:12391170 NCBI chrNW_004955413:27,065,785...27,072,432
Ensembl chrNW_004955413:27,065,785...27,072,432
JBrowse link
G Polrmt RNA polymerase mitochondrial enables ISO (PMID:21278163) UniProt PMID:21278163 NCBI chrNW_004955495:7,111,271...7,124,005
Ensembl chrNW_004955495:7,111,260...7,124,291
JBrowse link
DNA primase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polrmt RNA polymerase mitochondrial enables ISO (PMID:18685103) UniProt PMID:18685103 NCBI chrNW_004955495:7,111,271...7,124,005
Ensembl chrNW_004955495:7,111,260...7,124,291
JBrowse link
G Prim1 DNA primase subunit 1 enables ISO (MGI:6478526|PMID:8026492)
(PMID:24043831), (PMID:26975377)
UniProt PMID:8026492 PMID:24043831 PMID:26975377 MGI:6478526 NCBI chrNW_004955458:4,265,500...4,294,329
Ensembl chrNW_004955458:4,275,517...4,294,257
JBrowse link
G Primpol primase and DNA directed polymerase enables ISO (MGI:6393030|PMID:29073063)
(PMID:24126761), (PMID:24207056), (PMID:24240614), (PMID:24267451), (PMID:24682820), (PMID:28534480), (PMID:29608762), (PMID:30478192)
UniProt PMID:24126761 PMID:24207056 PMID:24240614 PMID:24267451 PMID:24682820 More... MGI:6393030 NCBI chrNW_004955403:24,278,727...24,307,312
Ensembl chrNW_004955403:24,279,122...24,303,682
JBrowse link
RNA polymerase I activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr1a RNA polymerase I subunit A enables ISO (PMID:23782956) ParkinsonsUK-UCL PMID:23782956 NCBI chrNW_004955424:1,507,935...1,595,068
Ensembl chrNW_004955424:1,508,037...1,593,108
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 14225
    catalytic activity 3723
      catalytic activity, acting on a nucleic acid 408
        catalytic activity, acting on RNA 248
          RNA polymerase activity 12
            5'-3' RNA polymerase activity 12
              DNA-directed 5'-3' RNA polymerase activity 11
                DNA primase activity 3
                RNA polymerase I activity 1
                RNA polymerase II activity 0
                RNA polymerase III activity 0
                RNA polymerase IV activity 0
                RNA polymerase V activity 0
                single subunit type RNA polymerase activity + 0
Path 2
Term Annotations click to browse term
  molecular_function 14225
    catalytic activity 3723
      transferase activity 1677
        transferase activity, transferring phosphorus-containing groups 689
          nucleotidyltransferase activity 80
            RNA polymerase activity 12
              5'-3' RNA polymerase activity 12
                DNA-directed 5'-3' RNA polymerase activity 11
                  DNA primase activity 3
                  RNA polymerase I activity 1
                  RNA polymerase II activity 0
                  RNA polymerase III activity 0
                  RNA polymerase IV activity 0
                  RNA polymerase V activity 0
                  single subunit type RNA polymerase activity + 0
paths to the root