Polr3b (RNA polymerase III subunit B) - Rat Genome Database
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Gene: Polr3b (RNA polymerase III subunit B) Chinchilla lanigera
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Symbol: Polr3b
Name: RNA polymerase III subunit B
RGD ID: 8991169
Description: INVOLVED IN positive regulation of innate immune response (ortholog); positive regulation of interferon-beta production (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH Cerebellar Hypoplasia with Endosteal Sclerosis (ortholog); genetic disease (ortholog); hypogonadotropic hypogonadism 7 with or without anosmia (ortholog); FOUND IN RNA polymerase III complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: DNA-directed RNA polymerase III subunit RPC2; polymerase (RNA) III (DNA directed) polypeptide B
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540540,353,281 - 40,451,479 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540540,353,289 - 40,451,445 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Polr3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540540,353,281 - 40,451,479 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540540,353,289 - 40,451,445 (+)NCBIChiLan1.0ChiLan1.0
POLR3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12106,357,748 - 106,510,198 (+)EnsemblGRCh38hg38GRCh38
GRCh3812106,357,712 - 106,510,198 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712106,751,526 - 106,903,976 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh3712106,751,436 - 106,903,976 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612105,275,619 - 105,428,105 (+)NCBINCBI36hg18NCBI36
Build 3412105,253,955 - 105,406,442NCBI
Celera12106,417,035 - 106,569,571 (+)NCBI
Cytogenetic Map12q23.3NCBI
HuRef12103,811,761 - 103,964,299 (+)NCBIHuRef
CHM1_112106,717,271 - 106,869,784 (+)NCBICHM1_1
Polr3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391084,458,156 - 84,563,042 (+)NCBIGRCm39mm39
GRCm381084,622,292 - 84,727,178 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1084,622,292 - 84,727,178 (+)EnsemblGRCm38mm10GRCm38
MGSCv371084,085,182 - 84,189,923 (+)NCBIGRCm37mm9NCBIm37
MGSCv361084,052,236 - 84,156,977 (+)NCBImm8
Celera1086,601,354 - 86,706,135 (+)NCBICelera
Cytogenetic Map10C1NCBI
Polr3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2719,039,179 - 19,142,450 (-)NCBI
Rnor_6.0 Ensembl724,745,051 - 24,851,227 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0724,745,051 - 24,851,227 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0724,893,473 - 24,997,174 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4721,167,374 - 21,271,601 (-)NCBIRGSC3.4rn4RGSC3.4
Celera716,249,574 - 16,351,645 (-)NCBICelera
Cytogenetic Map7q13NCBI
POLR3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112107,330,315 - 107,477,279 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12107,330,306 - 107,477,279 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012103,936,650 - 104,083,470 (+)NCBIMhudiblu_PPA_v0panPan3
POLR3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1032,202,190 - 32,309,614 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11032,202,188 - 32,309,775 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Polr3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364928,415,997 - 8,544,149 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLR3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl513,590,851 - 13,926,604 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1513,805,157 - 13,926,733 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2513,910,702 - 14,030,557 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POLR3B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111101,577,134 - 101,719,214 (+)NCBI
ChlSab1.1 Ensembl11101,585,900 - 101,713,126 (+)Ensembl
Polr3b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247502,906,041 - 3,004,241 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000019160   ⟹   ENSCLAP00000018975
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540540,353,281 - 40,451,479 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000019161   ⟹   ENSCLAP00000018976
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540540,353,937 - 40,450,883 (+)Ensembl
RefSeq Acc Id: XM_005374620   ⟹   XP_005374677
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540540,353,292 - 40,451,445 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013519054   ⟹   XP_013374508
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540540,353,289 - 40,444,166 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374677 (Get FASTA)   NCBI Sequence Viewer  
  XP_013374508 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005374677   ⟸   XM_005374620
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013374508   ⟸   XM_013519054
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000018976   ⟸   ENSCLAT00000019161
RefSeq Acc Id: ENSCLAP00000018975   ⟸   ENSCLAT00000019160


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012996 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000018975 ENTREZGENE
Ensembl Transcript ENSCLAT00000019160 ENTREZGENE
NCBI Gene Polr3b ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-26 Polr3b  RNA polymerase III subunit B    polymerase (RNA) III (DNA directed) polypeptide B  Symbol and/or name change 5135510 APPROVED