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ONTOLOGY REPORT - ANNOTATIONS

Term:lncRNA-mediated post-transcriptional gene silencing
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Accession:GO:0000512 term browser browse the term
Definition:A post-transcriptional gene silencing pathway in which regulatory long noncoding RNAs (lncRNAs) elicit silencing of specific target genes, often miRNAs or mRNAs.
Comment:This term should be applied to lncRNAs and proteins associated with this process and not to the target (miRNAs or mRNAs) of the process.
Synonyms:broad_synonym: lncRNA-mediated gene silencing


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lncRNA-mediated post-transcriptional gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnm3os dynamin 3, opposite strand involved_in ISO (PMID:31694982) BHF-UCL PMID:31694982 NCBI chr 1:162,045,192...162,053,119
Ensembl chr 1:162,045,192...162,053,119 		JBrowse link
G Elavl1 ELAV like RNA binding protein 1 involved_in IMP (PMID:22841487) FlyBase PMID:22841487 NCBI chr 8:4,334,781...4,375,104
Ensembl chr 8:4,335,382...4,375,413 		JBrowse link
G Hotair HOX transcript antisense RNA (non-protein coding) involved_in ISO (PMID:30720199)
(PMID:33102210)		 FlyBase PMID:30720199 PMID:33102210 NCBI chr15:102,852,497...102,856,381
Ensembl chr15:102,852,494...102,862,817 		JBrowse link
G Hottip Hoxa distal transcript antisense RNA involved_in ISO (PMID:31002141) ARUK-UCL PMID:31002141 NCBI chr 6:52,239,760...52,244,588
Ensembl chr 6:52,239,760...52,244,588 		JBrowse link
G Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) involved_in ISO (PMID:31168355) BHF-UCL PMID:31168355 NCBI chr19:5,845,718...5,852,700
Ensembl chr19:5,845,717...5,853,602 		JBrowse link
G Neat1 nuclear paraspeckle assembly transcript 1 (non-protein coding) involved_in ISO (PMID:28379604) ARUK-UCL PMID:28379604 NCBI chr19:5,874,736...5,895,508
Ensembl chr19:5,874,736...5,897,132 		JBrowse link
G Pvt1 Pvt1 oncogene involved_in ISO (PMID:28258379) BHF-UCL PMID:28258379 NCBI chr15:61,909,835...62,132,064
Ensembl chr15:61,888,639...62,249,945 		JBrowse link
G Xist inactive X specific transcripts involved_in ISO (PMID:29053187) BHF-UCL PMID:29053187 NCBI chr  X:102,503,979...102,526,839
Ensembl chr  X:102,503,972...102,537,573 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28636
    cellular process 18394
      metabolic process 11625
        biosynthetic process 8289
          macromolecule biosynthetic process 7276
            gene expression 6835
              negative regulation of gene expression 1531
                post-transcriptional gene silencing 349
                  regulatory ncRNA-mediated post-transcriptional gene silencing 342
                    lncRNA-mediated post-transcriptional gene silencing 8
Path 2
Term Annotations click to browse term
  biological_process 28636
    biological regulation 13449
      regulation of biological process 13008
        regulation of cellular process 12633
          regulation of metabolic process 6975
            regulation of biosynthetic process 5712
              regulation of macromolecule biosynthetic process 5493
                regulation of gene expression 5374
                  post-transcriptional regulation of gene expression 808
                    post-transcriptional gene silencing 349
                      regulatory ncRNA-mediated post-transcriptional gene silencing 342
                        lncRNA-mediated post-transcriptional gene silencing 8
paths to the root