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ONTOLOGY REPORT - ANNOTATIONS


Term:posttranscriptional gene silencing
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Accession:GO:0016441 term browser browse the term
Definition:The inactivation of gene expression by a posttranscriptional mechanism.
Synonyms:exact_synonym: PTGS;   post-transcriptional gene silencing;   quelling
 related_synonym: cosuppression
 xref: Wikipedia:Post_transcriptional_gene_silencing



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posttranscriptional gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07034923.1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr12:46,534...56,425 JBrowse link
G Celf1 CUGBP, Elav-like family member 1 involved_in ISO
IMP
(PMID:30508596) RGD PMID:30508596 PMID:30508596 RGD:38501076 NCBI chr 3:76,924,591...76,999,429
Ensembl chr 3:76,924,613...76,999,426
JBrowse link
G Celf2 CUGBP, Elav-like family member 2 involved_in IMP PMID:30508596 ARUK-UCL PMID:30508596 RGD:38501076 NCBI chr17:70,904,462...71,729,072
Ensembl chr17:71,210,853...71,728,333
JBrowse link
G Elavl1 ELAV like RNA binding protein 1 involved_in ISO (MGI:6479802|PMID:28350193) RGD PMID:28350193 MGI:6479802 NCBI chr12:2,640,936...2,684,787
Ensembl chr12:2,645,061...2,684,784
JBrowse link
G Gigyf2 GRB10 interacting GYF protein 2 involved_in ISO (PMID:27157137) RGD PMID:27157137 NCBI chr 9:88,001,212...88,127,040
Ensembl chr 9:88,001,301...88,125,715
JBrowse link
G LOC103689943 meiosis arrest female protein 1-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Marf1 meiosis regulator and mRNA stability factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:888,053...932,760
Ensembl chr10:888,076...932,753
JBrowse link
G Mir33 microRNA 33 acts_upstream_of_or_within ISO (MGI:4456895|PMID:20466882) RGD PMID:20466882 MGI:4456895 NCBI chr 7:113,713,855...113,713,923
Ensembl chr 7:113,713,855...113,713,923
JBrowse link
G Mir34c microRNA 34c acts_upstream_of_or_within ISO (MGI:4439432|PMID:20212154) RGD PMID:20212154 MGI:4439432 NCBI chr 8:51,409,726...51,409,802
Ensembl chr 8:51,409,726...51,409,802
JBrowse link
G Pum1 pumilio RNA-binding family member 1 involved_in ISO (MGI:5315177|PMID:22342750), (MGI:5640939|PMID:24412312) RGD PMID:22342750 PMID:24412312 MGI:5315177 MGI:5640939 NCBI chr 5:142,836,933...142,954,331
Ensembl chr 5:142,837,127...142,954,039
JBrowse link
G Tial1 Tia1 cytotoxic granule-associated RNA binding protein-like 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:183,008,358...183,045,092
Ensembl chr 1:183,009,253...183,031,637
JBrowse link
G Zar1 zygote arrest 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:35,193,446...35,197,382
Ensembl chr14:35,193,446...35,197,382
JBrowse link
conversion of ds siRNA to ss siRNA involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III involved_in ISO (PMID:19701182) RGD PMID:19701182 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07002945.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 1:86,731,265...86,765,014 JBrowse link
G Ajuba ajuba LIM protein acts_upstream_of_or_within ISO (PMID:20616046) RGD PMID:20616046 NCBI chr15:28,019,775...28,031,537
Ensembl chr15:28,019,778...28,030,021
JBrowse link
G Cnot1 CCR4-NOT transcription complex, subunit 1 involved_in ISO (PMID:23172285), (PMID:24768540) RGD PMID:23172285 PMID:24768540 NCBI chr19:9,255,190...9,346,574
Ensembl chr19:9,255,194...9,346,574
JBrowse link
G Eif6 eukaryotic translation initiation factor 6 involved_in ISS
ISO
GO_REF:0000024
(PMID:17507929)
UniProt
RGD
PMID:17507929 GO_REF:0000024 NCBI chr 3:144,325,038...144,331,396
Ensembl chr 3:144,325,036...144,331,401
JBrowse link
G Limd1 LIM domain containing 1 acts_upstream_of_or_within ISO (PMID:20616046) RGD PMID:20616046 NCBI chr 8:123,121,363...123,168,476
Ensembl chr 8:123,122,460...123,167,714
JBrowse link
G Mir1 microRNA 1 acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871), (MGI:5575655|PMID:17397913) RGD PMID:15361871 PMID:17397913 MGI:3510301 MGI:5575655 NCBI chr18:1,887,537...1,887,623 JBrowse link
G Mir100 microRNA 100 acts_upstream_of_or_within ISO (MGI:4822296|PMID:20439489) RGD PMID:20439489 MGI:4822296 NCBI chr 8:41,901,225...41,901,304
Ensembl chr 8:41,901,225...41,901,304
JBrowse link
G Mir107 microRNA 107 acts_upstream_of_or_within ISO (MGI:5013695|PMID:21415270) RGD PMID:21415270 MGI:5013695 NCBI chr 1:232,337,767...232,337,853
Ensembl chr 1:232,337,767...232,337,853
JBrowse link
G Mir10a microRNA 10a acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871) RGD PMID:15361871 MGI:3510301 NCBI chr10:81,283,171...81,283,280
Ensembl chr10:81,283,171...81,283,280
JBrowse link
G Mir124-1 microRNA 124-1 acts_upstream_of_or_within ISO (MGI:3706460|PMID:17403776), (MGI:4438512|PMID:19898466), (MGI:5303045|PMID:21857657) RGD PMID:17403776 PMID:19898466 PMID:21857657 MGI:3706460 MGI:4438512 MGI:5303045 NCBI chr15:38,842,014...38,842,098
Ensembl chr15:38,842,014...38,842,098
JBrowse link
G Mir124-2 microRNA 124-2 acts_upstream_of_or_within ISO (MGI:3706460|PMID:17403776), (MGI:4438512|PMID:19898466), (MGI:5303045|PMID:21857657) RGD PMID:17403776 PMID:19898466 PMID:21857657 MGI:3706460 MGI:4438512 MGI:5303045 NCBI chr 2:100,134,866...100,134,974
Ensembl chr 2:100,134,866...100,134,974
JBrowse link
G Mir124-3 microRNA 124-3 acts_upstream_of_or_within ISO (MGI:3706460|PMID:17403776), (MGI:4438512|PMID:19898466), (MGI:5303045|PMID:21857657) RGD PMID:17403776 PMID:19898466 PMID:21857657 MGI:3706460 MGI:4438512 MGI:5303045 NCBI chr 3:168,014,952...168,015,038
Ensembl chr 3:168,014,952...168,015,038
JBrowse link
G Mir125a microRNA 125a acts_upstream_of_or_within ISO (MGI:4438512|PMID:19898466) RGD PMID:19898466 MGI:4438512 NCBI chr 1:58,677,626...58,677,710
Ensembl chr 1:58,677,626...58,677,710
JBrowse link
G Mir125b1 microRNA 125b-1 involved_in ISO (MGI:5882697|PMID:28281528) RGD PMID:28281528 MGI:5882697 NCBI chr 8:41,952,966...41,953,052
Ensembl chr 8:41,952,966...41,953,052
JBrowse link
G Mir125b2 microRNA 125b-2 involved_in ISO (MGI:5882697|PMID:28281528) RGD PMID:28281528 MGI:5882697 NCBI chr11:16,245,620...16,245,707 JBrowse link
G Mir133a1 microRNA 133a-1 acts_upstream_of_or_within ISO MGI:3822152|MGI:3822154 (MGI:3820745|PMID:19015276) RGD PMID:19015276 MGI:3820745 NCBI chr18:1,885,082...1,885,168 JBrowse link
G Mir137 microRNA 137 acts_upstream_of_or_within ISO (MGI:4822296|PMID:20439489) RGD PMID:20439489 MGI:4822296 NCBI chr 2:206,480,881...206,480,982
Ensembl chr 2:206,480,884...206,480,985
JBrowse link
G Mir155 microRNA 155 acts_upstream_of_or_within ISO (MGI:4833768|PMID:20548288) RGD PMID:20548288 MGI:4833768 NCBI chr11:23,774,654...23,774,718
Ensembl chr11:23,774,654...23,774,718
JBrowse link
G Mir17 microRNA 17 acts_upstream_of_or_within ISO MGI:3790968 (MGI:5140688|PMID:21338882) RGD PMID:21338882 MGI:5140688 NCBI chr15:92,180,629...92,180,712
Ensembl chr15:92,180,629...92,180,712
JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within ISO (MGI:6108693|PMID:28819115) RGD PMID:28819115 MGI:6108693 NCBI chr 4:58,788,614...58,788,723
Ensembl chr 4:58,788,614...58,788,723
JBrowse link
G Mir196a microRNA 196a acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871) RGD PMID:15361871 MGI:3510301 NCBI chr 7:134,110,400...134,110,509
Ensembl chr 7:134,110,400...134,110,509
JBrowse link
G Mir196c microRNA 196c acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871) RGD PMID:15361871 MGI:3510301 NCBI chr10:81,231,006...81,231,085
Ensembl chr10:81,231,006...81,231,085
JBrowse link
G Mir1b microRNA 1b acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871) RGD PMID:15361871 MGI:3510301 NCBI chr 3:167,487,117...167,487,201
Ensembl chr 3:167,487,117...167,487,201
JBrowse link
G Mir200b microRNA 200b acts_upstream_of_or_within ISO (MGI:5013695|PMID:21415270) RGD PMID:21415270 MGI:5013695 NCBI chr 5:166,649,272...166,649,366
Ensembl chr 5:166,649,272...166,649,366
JBrowse link
G Mir205 microRNA 205 acts_upstream_of_or_within ISO (MGI:5514438|PMID:23974039) RGD PMID:23974039 MGI:5514438 NCBI chr13:105,035,878...105,035,985
Ensembl chr13:105,035,878...105,035,985
JBrowse link
G Mir21 microRNA 21 involved_in
acts_upstream_of_or_within
ISO (MGI:6208917|PMID:29925839)
(MGI:5693365|PMID:19147652)
RGD PMID:19147652 PMID:29925839 MGI:5693365 MGI:6208917 NCBI chr10:71,405,257...71,405,348
Ensembl chr10:71,405,257...71,405,348
JBrowse link
G Mir223 microRNA 223 acts_upstream_of_or_within ISO MGI:3811186 (MGI:3811177|PMID:18278031) RGD PMID:18278031 MGI:3811177 NCBI chr  X:61,141,887...61,141,996
Ensembl chr  X:61,141,887...61,141,996
JBrowse link
G Mir23a microRNA 23a acts_upstream_of_or_within ISO (MGI:5516374|PMID:24101522) RGD PMID:24101522 MGI:5516374 NCBI chr19:23,954,997...23,955,071
Ensembl chr19:23,954,997...23,955,071
JBrowse link
G Mir26a microRNA 26a acts_upstream_of_or_within ISO (MGI:5494382|PMID:22210897) RGD PMID:22210897 MGI:5494382 NCBI chr 8:118,755,289...118,755,378
Ensembl chr 8:118,755,289...118,755,378
JBrowse link
G Mir26b microRNA 26b acts_upstream_of_or_within ISO (MGI:5494382|PMID:22210897) RGD PMID:22210897 MGI:5494382 NCBI chr 9:75,976,596...75,976,680
Ensembl chr 9:75,976,596...75,976,680
JBrowse link
G Mir301a microRNA 301a acts_upstream_of_or_within ISO (MGI:5426073|PMID:22517757) RGD PMID:22517757 MGI:5426073 NCBI chr10:71,925,336...71,925,435
Ensembl chr10:71,925,336...71,925,435
JBrowse link
G Mir30a microRNA 30a acts_upstream_of_or_within ISO (MGI:3838679|PMID:19185580) RGD PMID:19185580 MGI:3838679 NCBI chr 9:25,737,600...25,737,670
Ensembl chr 9:25,737,600...25,737,670
JBrowse link
G Mir324 microRNA 324 acts_upstream_of_or_within ISO (MGI:5576401|PMID:24882011) RGD PMID:24882011 MGI:5576401 NCBI chr10:54,734,680...54,734,762
Ensembl chr10:54,734,678...54,734,766
JBrowse link
G Mir34a microRNA 34a acts_upstream_of_or_within ISO (MGI:4822296|PMID:20439489), (MGI:5613071|PMID:25043055) RGD PMID:20439489 PMID:25043055 MGI:4822296 MGI:5613071 NCBI chr 5:160,533,002...160,533,103
Ensembl chr 5:160,533,002...160,533,103
JBrowse link
G Mir3545 microRNA 3545 acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:4946569 NCBI chr 6:131,199,542...131,199,656
Ensembl chr 6:131,199,542...131,199,656
JBrowse link
G Mir423 microRNA 423 involved_in ISO (MGI:5922106|PMID:28411267) RGD PMID:28411267 MGI:5922106 NCBI chr10:61,914,142...61,914,220
Ensembl chr10:61,914,133...61,914,226
JBrowse link
G Mir489 microRNA 489 acts_upstream_of_or_within ISO (MGI:5312165|PMID:22358842) RGD PMID:22358842 MGI:5312165 NCBI chr 4:31,693,355...31,693,460
Ensembl chr 4:31,693,355...31,693,460
JBrowse link
G Mir494 microRNA 494 acts_upstream_of_or_within ISO (MGI:5302482|PMID:20837890) RGD PMID:20837890 MGI:5302482 NCBI chr 6:128,728,710...128,728,792
Ensembl chr 6:128,728,709...128,728,793
JBrowse link
G Mir7-1 microRNA 7-1 acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:4946569 NCBI chr17:6,273,264...6,273,360
Ensembl chr17:6,273,264...6,273,360
JBrowse link
G Mir873 microRNA 873 acts_upstream_of_or_within ISO (MGI:6103206|PMID:28837808) RGD PMID:28837808 MGI:6103206 NCBI chr 5:51,356,919...51,356,995
Ensembl chr 5:51,356,919...51,356,995
JBrowse link
G Mir874 microRNA 874 acts_upstream_of_or_within ISO (MGI:5551666|PMID:24462679) RGD PMID:24462679 MGI:5551666 NCBI chr17:6,620,649...6,620,724
Ensembl chr17:6,620,649...6,620,724
JBrowse link
G Mir96 microRNA 96 acts_upstream_of_or_within ISO (MGI:6108693|PMID:28819115) RGD PMID:28819115 MGI:6108693 NCBI chr 4:58,788,411...58,788,516
Ensembl chr 4:58,788,411...58,788,516
JBrowse link
G Mirlet7a1 microRNA let-7a-1 acts_upstream_of_or_within ISO MGI:3619049 (MGI:4438512|PMID:19898466), (MGI:5461254|PMID:23152446) RGD PMID:19898466 PMID:23152446 MGI:4438512 MGI:5461254 NCBI chr17:16,113,766...16,113,859
Ensembl chr17:16,113,768...16,113,867
JBrowse link
G Mirlet7b microRNA let-7b acts_upstream_of_or_within ISO (MGI:5461254|PMID:23152446) RGD PMID:23152446 MGI:5461254 NCBI chr 7:116,804,186...116,804,270
Ensembl chr 7:116,804,186...116,804,270
JBrowse link
G Mirlet7c1 microRNA let-7c-1 acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871) RGD PMID:15361871 MGI:3510301 NCBI chr11:16,201,163...16,201,256
Ensembl chr11:16,201,158...16,201,265
JBrowse link
G Mirlet7c2 microRNA let-7c-2 acts_upstream_of_or_within ISO (MGI:3510301|PMID:15361871) RGD PMID:15361871 MGI:3510301 NCBI chr 7:116,803,771...116,803,865
Ensembl chr 7:116,803,771...116,803,865
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase involved_in ISO (PMID:17507929) RGD PMID:17507929 NCBI chr 2:192,292,041...192,315,142
Ensembl chr 2:192,293,470...192,315,083
JBrowse link
G Tnrc6a trinucleotide repeat containing adaptor 6A involved_in IBA
ISO
PMID:21873635
(PMID:23172285)
RGD PMID:23172285 PMID:21873635 RGD:13792537 NCBI chr 1:177,561,898...177,715,669
Ensembl chr 1:177,646,030...177,715,660
JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:112,252,351...112,469,829
Ensembl chr 7:112,252,359...112,461,790
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C involved_in ISO
IBA
UniProtKB:Q8SY33 (PMID:23172285)
PMID:21873635
RGD PMID:23172285 PMID:21873635 RGD:13792537 NCBI chr10:102,908,958...102,979,543
Ensembl chr10:102,868,828...102,978,194
JBrowse link
G Wtip WT1 interacting protein acts_upstream_of_or_within ISO (PMID:20616046) RGD PMID:20616046 NCBI chr 1:86,731,214...86,764,939 JBrowse link
miRNA loading onto RISC involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23622242)
GO_REF:0000107
RGD
Ensembl
PMID:23622242 GO_REF:0000107 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282
JBrowse link
G Ago1 argonaute RISC component 1 involved_in ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:138,722,111...138,757,118
Ensembl chr 5:138,722,111...138,773,546
JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in ISO
IEA
(PMID:18178619), (PMID:19966796)
GO_REF:0000107
RGD
Ensembl
PMID:18178619 PMID:19966796 GO_REF:0000107 NCBI chr 7:105,018,202...105,105,120
Ensembl chr 7:105,029,120...105,104,974
JBrowse link
G Ago3 argonaute RISC catalytic component 3 involved_in ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230
JBrowse link
G Ago4 argonaute RISC component 4 involved_in ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:138,780,450...138,825,889
Ensembl chr 5:138,783,069...138,825,632
JBrowse link
G Dicer1 dicer 1 ribonuclease III involved_in ISO (PMID:18178619) RGD PMID:18178619 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in ISO (PMID:18178619) RGD PMID:18178619 NCBI chr 7:133,649,118...133,654,306
Ensembl chr 7:133,649,090...133,654,314
JBrowse link
miRNA mediated inhibition of translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 involved_in ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:138,722,111...138,757,118
Ensembl chr 5:138,722,111...138,773,546
JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in IEA
ISS
ISO
GO_REF:0000104
GO_REF:0000024
(PMID:17671087), (PMID:18771919), (PMID:19801630)
UniProt
RGD
PMID:17671087 PMID:18771919 PMID:19801630 GO_REF:0000024 GO_REF:0000104 NCBI chr 7:105,018,202...105,105,120
Ensembl chr 7:105,029,120...105,104,974
JBrowse link
G Ago3 argonaute RISC catalytic component 3 involved_in ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230
JBrowse link
G Ago4 argonaute RISC component 4 involved_in ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:138,780,450...138,825,889
Ensembl chr 5:138,783,069...138,825,632
JBrowse link
G Eif6 eukaryotic translation initiation factor 6 involved_in ISO
IEA
ISS
(PMID:17507929)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:17507929 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:144,325,038...144,331,396
Ensembl chr 3:144,325,036...144,331,401
JBrowse link
G Mir125a microRNA 125a acts_upstream_of_or_within ISO (MGI:5465045|PMID:22751012) RGD PMID:22751012 MGI:5465045 NCBI chr 1:58,677,626...58,677,710
Ensembl chr 1:58,677,626...58,677,710
JBrowse link
G Mir143 microRNA 143 acts_upstream_of_or_within ISO (MGI:5289772|PMID:21441927) RGD PMID:21441927 MGI:5289772 NCBI chr18:55,101,006...55,101,110
Ensembl chr18:55,101,006...55,101,110
JBrowse link
G Mir186 microRNA 186 acts_upstream_of_or_within ISO (MGI:6402838|PMID:32109384) RGD PMID:32109384 MGI:6402838 NCBI chr 2:246,582,806...246,582,891
Ensembl chr 2:246,582,806...246,582,891
JBrowse link
G Mirlet7b microRNA let-7b acts_upstream_of_or_within ISO (MGI:6402838|PMID:32109384) RGD PMID:32109384 MGI:6402838 NCBI chr 7:116,804,186...116,804,270
Ensembl chr 7:116,804,186...116,804,270
JBrowse link
G Mirlet7g microRNA let-7g acts_upstream_of_or_within ISO (MGI:6402838|PMID:32109384) RGD PMID:32109384 MGI:6402838 NCBI chr 8:106,822,293...106,822,380
Ensembl chr 8:106,822,280...106,822,388
JBrowse link
G Rbm4 RNA binding motif protein 4 involved_in ISO (PMID:19801630) RGD PMID:19801630 NCBI chr 1:202,078,442...202,087,506
Ensembl chr 1:202,085,279...202,105,380
JBrowse link
G Tnrc6a trinucleotide repeat containing adaptor 6A involved_in ISO (PMID:17671087) RGD PMID:17671087 NCBI chr 1:177,561,898...177,715,669
Ensembl chr 1:177,646,030...177,715,660
JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:112,252,351...112,469,829
Ensembl chr 7:112,252,359...112,461,790
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:102,908,958...102,979,543
Ensembl chr10:102,868,828...102,978,194
JBrowse link
G Trim71 tripartite motif containing 71 involved_in ISS
ISO
GO_REF:0000024
(MGI:5448492|PMID:22735451)
UniProt
RGD
PMID:22735451 GO_REF:0000024 MGI:5448492 NCBI chr 8:114,193,439...114,250,807
Ensembl chr 8:114,199,187...114,250,807
JBrowse link
G Zfp36 zinc finger protein 36 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5487524|PMID:21278420)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21278420 GO_REF:0000024 GO_REF:0000107 MGI:5487524 NCBI chr 1:83,669,084...83,671,564
Ensembl chr 1:83,669,084...83,671,564
JBrowse link
mRNA cleavage involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 NOT|involved_in ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:138,722,111...138,757,118
Ensembl chr 5:138,722,111...138,773,546
JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in ISO
ISS
IEA
(PMID:15260970), (PMID:17524464), (PMID:18771919)
(MGI:5616320|PMID:16357216)
GO_REF:0000024
GO_REF:0000104
RGD
UniProt
PMID:15260970 PMID:16357216 PMID:17524464 PMID:18771919 GO_REF:0000024 GO_REF:0000104 MGI:5616320 NCBI chr 7:105,018,202...105,105,120
Ensembl chr 7:105,029,120...105,104,974
JBrowse link
G Ago3 argonaute RISC catalytic component 3 NOT|involved_in ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230
JBrowse link
G Ago4 argonaute RISC component 4 NOT|involved_in ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:138,780,450...138,825,889
Ensembl chr 5:138,783,069...138,825,632
JBrowse link
G Mir196a microRNA 196a acts_upstream_of_or_within ISO (MGI:3042528|PMID:15105502), (MGI:3510301|PMID:15361871) RGD PMID:15105502 PMID:15361871 MGI:3042528 MGI:3510301 NCBI chr 7:134,110,400...134,110,509
Ensembl chr 7:134,110,400...134,110,509
JBrowse link
G Mir196b microRNA 196b acts_upstream_of_or_within ISO (MGI:3042528|PMID:15105502) RGD PMID:15105502 MGI:3042528 NCBI chr 4:81,330,487...81,330,571 JBrowse link
G Mir196c microRNA 196c acts_upstream_of_or_within ISO (MGI:3042528|PMID:15105502), (MGI:3510301|PMID:15361871) RGD PMID:15105502 PMID:15361871 MGI:3042528 MGI:3510301 NCBI chr10:81,231,006...81,231,085
Ensembl chr10:81,231,006...81,231,085
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase involved_in ISO (PMID:16289642) RGD PMID:16289642 NCBI chr 2:192,292,041...192,315,142
Ensembl chr 2:192,293,470...192,315,083
JBrowse link
mRNA cleavage involved in gene silencing by siRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 NOT|involved_in ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:138,722,111...138,757,118
Ensembl chr 5:138,722,111...138,773,546
JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:15260970), (PMID:22795694)
Ensembl
RGD
PMID:15260970 PMID:22795694 GO_REF:0000107 NCBI chr 7:105,018,202...105,105,120
Ensembl chr 7:105,029,120...105,104,974
JBrowse link
G Ago3 argonaute RISC catalytic component 3 NOT|involved_in ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230
JBrowse link
G Ago4 argonaute RISC component 4 NOT|involved_in ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:138,780,450...138,825,889
Ensembl chr 5:138,783,069...138,825,632
JBrowse link
negative regulation of gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnd1 DND microRNA-mediated repression inhibitor 1 involved_in ISO
IBA
(PMID:18155131)
PMID:21873635
RGD PMID:18155131 PMID:21873635 RGD:13792537 NCBI chr18:28,378,692...28,381,316
Ensembl chr18:28,378,692...28,381,316
JBrowse link
G Elavl1 ELAV like RNA binding protein 1 involved_in ISO
ISS
RNAcentral:URS000024463E_9606 (PMID:26595526), (PMID:27089893)
GO_REF:0000024
RGD
UniProt
PMID:26595526 PMID:27089893 GO_REF:0000024 NCBI chr12:2,640,936...2,684,787
Ensembl chr12:2,645,061...2,684,784
JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19409607) RGD PMID:19409607 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma involved_in ISO (PMID:28522568) RGD PMID:28522568 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO RNAcentral:URS000024463E_9606 (PMID:22269326) RGD PMID:22269326 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
negative regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcdin3d BCDIN3 domain containing RNA methyltransferase involved_in ISO
IBA
ISS
(PMID:23063121)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:23063121 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 7:130,605,540...130,610,134
Ensembl chr 7:130,605,541...130,610,115
JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:18951094) RGD PMID:18951094 NCBI chr20:48,865,329...48,964,769
Ensembl chr20:48,869,485...48,955,077
JBrowse link
negative regulation of primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il6 interleukin 6 acts_upstream_of ISO UniProtKB:P40763 (PMID:31507089) RGD PMID:31507089 NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178
JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:18951094) RGD PMID:18951094 NCBI chr20:48,865,329...48,964,769
Ensembl chr20:48,869,485...48,955,077
JBrowse link
G Mecp2 methyl CpG binding protein 2 IMP RGD PMID:24636259 RGD:12789709 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689
JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO (PMID:31507089) RGD PMID:31507089 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057
JBrowse link
negative regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Esr1 estrogen receptor 1 involved_in ISO
IEA
(PMID:20388878)
GO_REF:0000107
RGD
Ensembl
PMID:20388878 GO_REF:0000107 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002
JBrowse link
G Ncor1 nuclear receptor co-repressor 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:20388878)
Ensembl
RGD
PMID:20388878 GO_REF:0000107 NCBI chr10:46,999,536...47,142,294
Ensembl chr10:46,999,536...47,141,032
JBrowse link
G Ncor2 nuclear receptor co-repressor 2 involved_in ISO (PMID:20388878) RGD PMID:20388878 NCBI chr12:31,466,418...31,628,319
Ensembl chr12:31,466,412...31,628,319
JBrowse link
G Ppp3ca protein phosphatase 3 catalytic subunit alpha involved_in ISO (MGI:5562625|PMID:24161931) RGD PMID:24161931 MGI:5562625 NCBI chr 2:225,165,981...225,440,978
Ensembl chr 2:225,165,766...225,438,974
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO RNAcentral:URS000024463E_9606 (PMID:22269326) RGD PMID:22269326 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tnf tumor necrosis factor acts_upstream_of_or_within ISO (PMID:31124343), (PMID:31824476) RGD PMID:31124343 PMID:31824476 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO MGI:1890508 (MGI:5013521|PMID:21522133) RGD PMID:21522133 MGI:5013521 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Zc3h10 zinc finger CCCH type containing 10 involved_in ISO (PMID:28431233) RGD PMID:28431233 NCBI chr 7:973,415...977,742
Ensembl chr 7:972,855...979,349
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISS
ISO
GO_REF:0000024
(PMID:22055188)
UniProt
RGD
PMID:22055188 GO_REF:0000024 NCBI chr 5:137,376,562...137,385,351
Ensembl chr 5:137,376,564...137,385,351
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033|MGI:98834 (MGI:5013521|PMID:21522133) RGD PMID:21522133 MGI:5013521 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110
JBrowse link
negative regulation of production of siRNA involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tert telomerase reverse transcriptase involved_in ISO (PMID:19701182) RGD PMID:19701182 NCBI chr 1:29,637,213...29,659,509
Ensembl chr 1:29,637,506...29,659,561
JBrowse link
negative regulation of RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3573853|PMID:15556947)
Ensembl
RGD
PMID:15556947 GO_REF:0000107 MGI:3573853 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282
JBrowse link
positive regulation of gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07002945.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:86,731,265...86,765,014 JBrowse link
G Ajuba ajuba LIM protein involved_in ISO
IBA
ISS
(PMID:20616046)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20616046 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr15:28,019,775...28,031,537
Ensembl chr15:28,019,778...28,030,021
JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:17531811) RGD PMID:17531811 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069
JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in ISO
ISS
IEA
(PMID:17057366)
(MGI:4868681|PMID:20159450)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:17057366 PMID:20159450 GO_REF:0000024 GO_REF:0000107 MGI:4868681 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050
JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:17057366)
UniProt
Ensembl
RGD
PMID:17057366 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:116,884,167...116,937,586
Ensembl chr 2:116,884,248...116,937,590
JBrowse link
G Limd1 LIM domain containing 1 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:20616046)
UniProt
RGD
PMID:20616046 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 8:123,121,363...123,168,476
Ensembl chr 8:123,122,460...123,167,714
JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 involved_in IMP PMID:24676391 BHF-UCL PMID:24676391 RGD:10400879 NCBI chr 2:224,016,214...224,132,135
Ensembl chr 2:224,016,214...224,110,404
JBrowse link
G Pum1 pumilio RNA-binding family member 1 involved_in ISO (PMID:20818387), (PMID:22345517) RGD PMID:20818387 PMID:22345517 NCBI chr 5:142,836,933...142,954,331
Ensembl chr 5:142,837,127...142,954,039
JBrowse link
G Pum2 pumilio RNA-binding family member 2 involved_in ISO (PMID:22345517) RGD PMID:22345517 NCBI chr 6:31,462,879...31,542,976
Ensembl chr 6:31,462,872...31,542,976
JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO (PMID:23820254) RGD PMID:23820254 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057
JBrowse link
G Tial1 Tia1 cytotoxic granule-associated RNA binding protein-like 1 involved_in ISO
IEA
FB:FBgn0005649 (PMID:33203680)
GO_REF:0000107
RGD
Ensembl
PMID:33203680 GO_REF:0000107 NCBI chr 1:183,008,358...183,045,092
Ensembl chr 1:183,009,253...183,031,637
JBrowse link
G Trim71 tripartite motif containing 71 acts_upstream_of_or_within ISO (MGI:4438512|PMID:19898466) RGD PMID:19898466 MGI:4438512 NCBI chr 8:114,193,439...114,250,807
Ensembl chr 8:114,199,187...114,250,807
JBrowse link
G Wtip WT1 interacting protein involved_in ISO (PMID:20616046) RGD PMID:20616046 NCBI chr 1:86,731,214...86,764,939 JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:15766526)
UniProt
Ensembl
RGD
PMID:15766526 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:83,669,084...83,671,564
Ensembl chr 1:83,669,084...83,671,564
JBrowse link
positive regulation of miRNA mediated inhibition of translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 involved_in ISO
IEA
(PMID:23409027)
GO_REF:0000107
RGD
Ensembl
PMID:23409027 GO_REF:0000107 NCBI chr 7:105,018,202...105,105,120
Ensembl chr 7:105,029,120...105,104,974
JBrowse link
G Ddx6 DEAD-box helicase 6 involved_in ISO (PMID:27342281) RGD PMID:27342281 NCBI chr 8:44,931,127...44,967,773
Ensembl chr 8:44,931,974...44,964,405
JBrowse link
G Eif4e2 eukaryotic translation initiation factor 4E family member 2 involved_in ISO (PMID:28487484) RGD PMID:28487484 NCBI chr 9:87,886,078...87,901,058
Ensembl chr 9:87,878,085...87,914,482
JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:24335285), (PMID:27342281), (PMID:28487484), (PMID:32354837) RGD PMID:24335285 PMID:27342281 PMID:28487484 PMID:32354837 NCBI chr14:78,056,115...78,099,846
Ensembl chr14:78,056,297...78,098,793
JBrowse link
G Eif4g1 eukaryotic translation initiation factor 4 gamma, 1 involved_in ISO (PMID:23409027) RGD PMID:23409027 NCBI chr11:80,221,919...80,241,958
Ensembl chr11:80,221,919...80,241,941
JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO (PMID:23820254) RGD PMID:23820254 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057
JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B involved_in ISO (PMID:32354837) RGD PMID:32354837 NCBI chr 7:112,252,351...112,469,829
Ensembl chr 7:112,252,359...112,461,790
JBrowse link
positive regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISO
GO_REF:0000107
(PMID:18548003)
Ensembl
RGD
PMID:18548003 GO_REF:0000107 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in ISO (PMID:18548003) RGD PMID:18548003 NCBI chr10:91,723,508...91,732,210
Ensembl chr10:91,723,508...91,732,283
JBrowse link
G Egfr epidermal growth factor receptor involved_in ISO (PMID:21673316) RGD PMID:21673316 NCBI chr14:91,176,931...91,349,722
Ensembl chr14:91,177,067...91,344,382
JBrowse link
G Il6 interleukin 6 acts_upstream_of_or_within ISO (PMID:27252421) RGD PMID:27252421 NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178
JBrowse link
G Lin28a lin-28 homolog A involved_in ISO (MGI:5294254|PMID:21962509) RGD PMID:21962509 MGI:5294254 NCBI chr 5:146,227,119...146,244,122
Ensembl chr 5:146,227,119...146,244,122
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 involved_in ISO
IEA
(PMID:24375836)
GO_REF:0000107
RGD
Ensembl
PMID:24375836 GO_REF:0000107 NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147
JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 involved_in ISO (PMID:24375836) RGD PMID:24375836 NCBI chr 7:8,590,729...8,610,279
Ensembl chr 7:8,580,905...8,610,243
JBrowse link
G Myocd myocardin involved_in IEA
ISO
GO_REF:0000107
(MGI:6414695|PMID:28342807)
Ensembl
RGD
PMID:28342807 GO_REF:0000107 MGI:6414695 NCBI chr10:49,833,219...49,928,806
Ensembl chr10:49,836,641...49,927,627
JBrowse link
G Nr2f1 nuclear receptor subfamily 2, group F, member 1 acts_upstream_of_or_within ISO MGI:2385930 (MGI:5574156|PMID:24349493) RGD PMID:24349493 MGI:5574156 NCBI chr 2:8,040,375...8,050,123
Ensembl chr 2:8,040,377...8,050,123
JBrowse link
G Ripk1 receptor interacting serine/threonine kinase 1 involved_in ISO (PMID:26020802) RGD PMID:26020802 NCBI chr17:30,839,639...30,871,824
Ensembl chr17:30,839,650...30,871,824
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO (PMID:18548003) RGD PMID:18548003 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tp53 tumor protein p53 involved_in ISO (PMID:22578566), (PMID:26100857) RGD PMID:22578566 PMID:26100857 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
positive regulation of RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpo5 exportin 5 involved_in ISO (PMID:15613540) RGD PMID:15613540 NCBI chr 9:14,740,182...14,778,171
Ensembl chr 9:14,740,182...14,778,171
JBrowse link
post-transcriptional gene silencing by RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Helz helicase with zinc finger involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:92,479,403...92,645,234
Ensembl chr10:92,501,518...92,638,383
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:192,292,041...192,315,142
Ensembl chr 2:192,293,470...192,315,083
JBrowse link
G Mov10l1 Mov10 like RISC complex RNA helicase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:120,070,171...120,135,406
Ensembl chr 7:120,070,135...120,134,765
JBrowse link
pre-miRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpo5 exportin 5 involved_in ISO (PMID:14681208), (PMID:15613540) RGD PMID:14681208 PMID:15613540 NCBI chr 9:14,740,182...14,778,171
Ensembl chr 9:14,740,182...14,778,171
JBrowse link
pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23622242)
GO_REF:0000107
RGD
Ensembl
PMID:23622242 GO_REF:0000107 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282
JBrowse link
G Ago1 argonaute RISC component 1 involved_in ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:138,722,111...138,757,118
Ensembl chr 5:138,722,111...138,773,546
JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in ISO
IEA
ISS
(PMID:16424907), (PMID:17671087), (PMID:18178619), (PMID:19966796)
(MGI:5616320|PMID:16357216)
GO_REF:0000104
GO_REF:0000024
RGD
UniProt
PMID:16357216 PMID:16424907 PMID:17671087 PMID:18178619 PMID:19966796 GO_REF:0000024 GO_REF:0000104 MGI:5616320 NCBI chr 7:105,018,202...105,105,120
Ensembl chr 7:105,029,120...105,104,974
JBrowse link
G Ago3 argonaute RISC catalytic component 3 involved_in ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230
JBrowse link
G Ago4 argonaute RISC component 4 involved_in ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:138,780,450...138,825,889
Ensembl chr 5:138,783,069...138,825,632
JBrowse link
G Dicer1 dicer 1 ribonuclease III involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:15973356), (PMID:16357216), (PMID:18178619), (PMID:23661684), (PMID:25549615)
(MGI:4359358|PMID:18604195)
PMID:21873635
RGD PMID:15973356 PMID:16357216 PMID:18178619 PMID:18604195 PMID:23661684 More... MGI:4359358, RGD:13792537 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Drosha drosha ribonuclease III acts_upstream_of_or_within ISO (MGI:4359358|PMID:18604195) RGD PMID:18604195 MGI:4359358 NCBI chr 2:61,864,886...61,976,688
Ensembl chr 2:61,864,970...61,976,688
JBrowse link
G Lin28a lin-28 homolog A involved_in
acts_upstream_of_or_within
ISO (PMID:18951094), (PMID:19703396)
(MGI:4359358|PMID:18604195), (MGI:4359360|PMID:18292307)
RGD PMID:18292307 PMID:18604195 PMID:18951094 PMID:19703396 MGI:4359358 MGI:4359360 NCBI chr 5:146,227,119...146,244,122
Ensembl chr 5:146,227,119...146,244,122
JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:19703396) RGD PMID:19703396 NCBI chr20:48,865,329...48,964,769
Ensembl chr20:48,869,485...48,955,077
JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 involved_in ISO
IEA
(PMID:16424907), (PMID:23661684)
GO_REF:0000107
RGD
Ensembl
PMID:16424907 PMID:23661684 GO_REF:0000107 NCBI chr 3:61,575,447...61,594,393
Ensembl chr 3:61,575,447...61,594,347
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in ISS
ISO
GO_REF:0000024
(PMID:15973356), (PMID:16357216), (PMID:16424907), (PMID:18178619), (PMID:23661684)
UniProt
RGD
PMID:15973356 PMID:16357216 PMID:16424907 PMID:18178619 PMID:23661684 GO_REF:0000024 NCBI chr 7:133,649,118...133,654,306
Ensembl chr 7:133,649,090...133,654,314
JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO (PMID:19703396), (PMID:25979828) RGD PMID:19703396 PMID:25979828 NCBI chr 5:123,201,723...123,306,582
Ensembl chr 5:123,203,003...123,306,465
JBrowse link
G Tut7 terminal uridylyl transferase 7 involved_in ISO (PMID:25979828) RGD PMID:25979828 NCBI chr17:4,849,287...4,903,542
Ensembl chr17:4,849,283...4,903,169
JBrowse link
primary miRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl3 methyltransferase-like 3 involved_in ISO
IBA
(PMID:25799998)
PMID:21873635
RGD PMID:25799998 PMID:21873635 RGD:13792537 NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041
JBrowse link
primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07035787.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr12:19,392,625...19,406,095 JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked acts_upstream_of_or_within_negative_effect ISO (MGI:6108693|PMID:28819115) RGD PMID:28819115 MGI:6108693 NCBI chr  X:9,479,532...9,493,455
Ensembl chr  X:9,479,532...9,493,168
JBrowse link
G Dgcr8 DGCR8 microprocessor complex subunit involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(PMID:15531877), (PMID:15574589)
(PMID:24449907), (PMID:24910438)
RGD PMID:15531877 PMID:15574589 PMID:24449907 PMID:24910438 PMID:21873635 RGD:13792537 NCBI chr11:82,704,673...82,737,251
Ensembl chr11:82,704,729...82,737,242
JBrowse link
G Drosha drosha ribonuclease III involved_in ISO (PMID:14508493), (PMID:15574589) RGD PMID:14508493 PMID:15574589 NCBI chr 2:61,864,886...61,976,688
Ensembl chr 2:61,864,970...61,976,688
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 involved_in ISO
ISS
(PMID:26321680)
GO_REF:0000024
RGD
UniProt
PMID:26321680 GO_REF:0000024 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249
JBrowse link
G Mettl3 methyltransferase-like 3 involved_in ISO (PMID:25799998) RGD PMID:25799998 NCBI chr15:25,002,505...25,014,097
Ensembl chr15:25,003,172...25,014,041
JBrowse link
G Pus10 pseudouridine synthase 10 involved_in ISO (PMID:31819270) RGD PMID:31819270 NCBI chr14:97,621,228...97,684,059
Ensembl chr14:97,621,391...97,684,046
JBrowse link
G Srrt serrate, RNA effector molecule involved_in ISO (PMID:19632182)
(MGI:4359572|PMID:19632182)
RGD PMID:19632182 MGI:4359572 NCBI chr12:19,392,578...19,406,098 JBrowse link
production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific acts_upstream_of_or_within ISO MGI:3032487 (MGI:5495061|PMID:23622242) RGD PMID:23622242 MGI:5495061 NCBI chr 2:175,138,391...175,178,280
Ensembl chr 2:175,138,403...175,178,282
JBrowse link
G Ago1 argonaute RISC component 1 involved_in ISO (PMID:22795694) RGD PMID:22795694 NCBI chr 5:138,722,111...138,757,118
Ensembl chr 5:138,722,111...138,773,546
JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in
acts_upstream_of_or_within
ISO (PMID:19966796), (PMID:23661684)
MGI:3056454 (MGI:4462112|PMID:20424607)
RGD PMID:19966796 PMID:20424607 PMID:23661684 MGI:4462112 NCBI chr 7:105,018,202...105,105,120
Ensembl chr 7:105,029,120...105,104,974
JBrowse link
G Ago3 argonaute RISC catalytic component 3 involved_in ISO (PMID:22795694) RGD PMID:22795694 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230
JBrowse link
G Ago4 argonaute RISC component 4 involved_in ISO (PMID:22795694) RGD PMID:22795694 NCBI chr 5:138,780,450...138,825,889
Ensembl chr 5:138,783,069...138,825,632
JBrowse link
G Dicer1 dicer 1 ribonuclease III involved_in
acts_upstream_of_or_within
ISO (PMID:15973356), (PMID:23322395), (PMID:23661684), (PMID:26435691)
MGI:1926500|MGI:3589209|MGI:3589287|MGI:3622169 (MGI:3528782|PMID:15713842), (MGI:3588609|PMID:16040801), (MGI:3619610|PMID:16462742)
(MGI:4454581|PMID:20463238), (MGI:4830414|PMID:20805985), (MGI:5527004|PMID:24209619)
RGD PMID:15713842 PMID:15973356 PMID:16040801 PMID:16462742 PMID:20463238 More... MGI:3528782 MGI:3588609 MGI:3619610 MGI:4454581 MGI:4830414 MGI:5527004 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 involved_in ISO (PMID:23661684) RGD PMID:23661684 NCBI chr 3:61,575,447...61,594,393
Ensembl chr 3:61,575,447...61,594,347
JBrowse link
G Pum1 pumilio RNA-binding family member 1 involved_in IBA
ISO
PMID:21873635
(PMID:28431233)
RGD PMID:28431233 PMID:21873635 RGD:13792537 NCBI chr 5:142,836,933...142,954,331
Ensembl chr 5:142,837,127...142,954,039
JBrowse link
G Pum2 pumilio RNA-binding family member 2 involved_in ISO
IBA
(PMID:28431233)
PMID:21873635
RGD PMID:28431233 PMID:21873635 RGD:13792537 NCBI chr 6:31,462,879...31,542,976
Ensembl chr 6:31,462,872...31,542,976
JBrowse link
G Rbm3 RNA binding motif protein 3 acts_upstream_of_or_within ISO (MGI:3530692|PMID:15684048) RGD PMID:15684048 MGI:3530692 NCBI chr  X:14,348,909...14,352,387
Ensembl chr  X:14,348,910...14,353,580
JBrowse link
G Snip1 Smad nuclear interacting protein 1 involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:18632581)
UniProt
RGD
PMID:18632581 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:137,328,371...137,335,846
Ensembl chr 5:137,328,371...137,335,845
JBrowse link
G Spout1 SPOUT domain containing methyltransferase 1 involved_in IBA
ISO
PMID:21873635
(PMID:28431233)
RGD PMID:28431233 PMID:21873635 RGD:13792537 NCBI chr 3:13,451,191...13,458,919
Ensembl chr 3:13,451,202...13,493,355
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in ISO (PMID:15973356), (PMID:23661684) RGD PMID:15973356 PMID:23661684 NCBI chr 7:133,649,118...133,654,306
Ensembl chr 7:133,649,090...133,654,314
JBrowse link
G Trim71 tripartite motif containing 71 involved_in ISO
ISS
(PMID:28431233)
GO_REF:0000024
RGD
UniProt
PMID:28431233 GO_REF:0000024 NCBI chr 8:114,193,439...114,250,807
Ensembl chr 8:114,199,187...114,250,807
JBrowse link
G Zc3h7a zinc finger CCCH type containing 7 A involved_in ISO
IBA
(PMID:28431233)
PMID:21873635
RGD PMID:28431233 PMID:21873635 RGD:13792537 NCBI chr10:4,473,177...4,512,669
Ensembl chr10:4,473,203...4,512,665
JBrowse link
G Zc3h7b zinc finger CCCH-type containing 7B involved_in ISO
IBA
(PMID:28431233)
PMID:21873635
RGD PMID:28431233 PMID:21873635 RGD:13792537 NCBI chr 7:113,262,142...113,310,399
Ensembl chr 7:113,262,165...113,310,399
JBrowse link
production of siRNA involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07012856.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Dicer1 dicer 1 ribonuclease III involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:2679763|PMID:14528307)
(MGI:5527004|PMID:24209619)
(PMID:15973356), (PMID:17452327), (PMID:23661684)
RGD PMID:14528307 PMID:15973356 PMID:17452327 PMID:23661684 PMID:24209619 More... MGI:2679763 MGI:5527004, RGD:13792537 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Henmt1 HEN methyltransferase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:196,585,732...196,603,700 JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:17452327)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:17452327 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:61,575,447...61,594,393
Ensembl chr 3:61,575,447...61,594,347
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in ISO
ISS
(PMID:15973356), (PMID:17452327)
GO_REF:0000024
RGD
UniProt
PMID:15973356 PMID:17452327 GO_REF:0000024 NCBI chr 7:133,649,118...133,654,306
Ensembl chr 7:133,649,090...133,654,314
JBrowse link
G Tert telomerase reverse transcriptase involved_in ISO (PMID:19701182) RGD PMID:19701182 NCBI chr 1:29,637,213...29,659,509
Ensembl chr 1:29,637,506...29,659,561
JBrowse link
regulation of gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmr1 FMRP translational regulator 1 involved_in ISO
ISS
(PMID:25464849)
GO_REF:0000024
RGD
UniProt
PMID:25464849 GO_REF:0000024 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050
JBrowse link
G Lin28a lin-28 homolog A acts_upstream_of_or_within ISO MGI:2685973 (MGI:4438512|PMID:19898466) RGD PMID:19898466 MGI:4438512 NCBI chr 5:146,227,119...146,244,122
Ensembl chr 5:146,227,119...146,244,122
JBrowse link
G Mael maelstrom spermatogenic transposon silencer involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:78,457,073...78,496,657
Ensembl chr13:78,457,073...78,496,657
JBrowse link
G Mir154 microRNA 154 acts_upstream_of_or_within ISO (MGI:5705446|PMID:25959411) RGD PMID:25959411 MGI:5705446 NCBI chr 6:128,752,947...128,753,030
Ensembl chr 6:128,752,947...128,753,030
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO MGI:4124681 (MGI:5315650|PMID:22187428) RGD PMID:22187428 MGI:5315650 NCBI chr10:102,908,958...102,979,543
Ensembl chr10:102,868,828...102,978,194
JBrowse link
G Trim71 tripartite motif containing 71 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:5448492|PMID:22735451)
MGI:1890546 (MGI:4438512|PMID:19898466)
UniProt
RGD
PMID:19898466 PMID:22735451 GO_REF:0000024 MGI:4438512 MGI:5448492 NCBI chr 8:114,193,439...114,250,807
Ensembl chr 8:114,199,187...114,250,807
JBrowse link
regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tarbp2 TARBP2 subunit of RISC loading complex acts_upstream_of_or_within ISO MGI:2135565|MGI:5645258 (MGI:6094668|PMID:27159388) RGD PMID:27159388 MGI:6094668 NCBI chr 7:133,649,118...133,654,306
Ensembl chr 7:133,649,090...133,654,314
JBrowse link
regulation of production of siRNA involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:133,649,118...133,654,306
Ensembl chr 7:133,649,090...133,654,314
JBrowse link
RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589287 (MGI:3528782|PMID:15713842) RGD PMID:15713842 MGI:3528782 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Nrde2 NRDE-2, necessary for RNA interference, domain containing involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:119,405,103...119,446,861
Ensembl chr 6:119,404,334...119,448,915
JBrowse link
siRNA loading onto RISC involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:19966796)
Ensembl
RGD
PMID:19966796 GO_REF:0000107 NCBI chr 7:105,018,202...105,105,120
Ensembl chr 7:105,029,120...105,104,974
JBrowse link
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 involved_in ISO
ISS
(PMID:17495927)
GO_REF:0000024
RGD
UniProt
PMID:17495927 GO_REF:0000024 NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421
JBrowse link
G Dicer1 dicer 1 ribonuclease III involved_in ISO (PMID:15973356) RGD PMID:15973356 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in ISO (PMID:15973356) RGD PMID:15973356 NCBI chr 7:133,649,118...133,654,306
Ensembl chr 7:133,649,090...133,654,314
JBrowse link
targeting of mRNA for destruction involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 involved_in ISO
ISS
(PMID:17495927)
GO_REF:0000024
RGD
UniProt
PMID:17495927 GO_REF:0000024 NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421
JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:17531811) RGD PMID:17531811 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069
JBrowse link
G Dicer1 dicer 1 ribonuclease III involved_in ISO (PMID:15973356), (PMID:17452327) RGD PMID:15973356 PMID:17452327 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex involved_in ISS
ISO
GO_REF:0000024
(PMID:15973356)
UniProt
RGD
PMID:15973356 GO_REF:0000024 NCBI chr 7:133,649,118...133,654,306
Ensembl chr 7:133,649,090...133,654,314
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19504
    metabolic process 11814
      regulation of metabolic process 6748
        regulation of macromolecule metabolic process 6253
          regulation of gene expression 4818
            posttranscriptional regulation of gene expression 583
              posttranscriptional gene silencing 139
                RNAi-mediated antiviral immune response + 0
                long-distance posttranscriptional gene silencing 0
                negative regulation of posttranscriptional gene silencing + 21
                positive regulation of posttranscriptional gene silencing + 33
                post-transcriptional gene silencing by RNA + 130
                regulation of posttranscriptional gene silencing + 53
Path 2
Term Annotations click to browse term
  biological_process 19504
    biological regulation 13513
      regulation of biological process 12770
        regulation of metabolic process 6748
          regulation of macromolecule metabolic process 6253
            negative regulation of macromolecule metabolic process 2958
              negative regulation of gene expression 1124
                gene silencing 267
                  posttranscriptional gene silencing 139
                    RNAi-mediated antiviral immune response + 0
                    long-distance posttranscriptional gene silencing 0
                    negative regulation of posttranscriptional gene silencing + 21
                    positive regulation of posttranscriptional gene silencing + 33
                    post-transcriptional gene silencing by RNA + 130
                    regulation of posttranscriptional gene silencing + 53
paths to the root