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orchitis - Ontology Report - Rat Genome Database

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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:orchitis
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Accession:DOID:2518 term browser browse the term
Definition:Inflammation of a TESTIS. It has many features of EPIDIDYMITIS, such as swollen SCROTUM; PAIN; PYURIA; and FEVER. It is usually related to infections in the URINARY TRACT, which likely spread to the EPIDIDYMIS and then the TESTIS through either the VAS DEFERENS or the lymphatics of the SPERMATIC CORD.
Synonyms:exact_synonym: Orchitides;   inflammation of testis;   orchititis
 primary_id: MESH:D009920
 xref: EFO:1001078;   ICD10CM:N45.2;   NCI:C97145
For additional species annotation, visit the Alliance of Genome Resources.

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orchitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl2 C-C motif chemokine ligand 2 ISO protein:increased expression:testicle, fluid (rat) RGD PMID:14638441 RGD:1358455 NCBI chr11:81,926,403...81,928,278
Ensembl chr11:81,926,397...81,928,279 		JBrowse link
G Ccl5 C-C motif chemokine ligand 5 ISO RGD PMID:11897701 RGD:704384 NCBI chr11:83,416,604...83,421,344
Ensembl chr11:83,416,604...83,421,344 		JBrowse link
G Ccr5 C-C motif chemokine receptor 5 severity ISO RGD PMID:22351899 RGD:6767571 NCBI chr 9:123,921,557...123,934,153
Ensembl chr 9:123,921,580...123,947,736 		JBrowse link
G Cd86 CD86 antigen ISO protein:increased expression:testis, macrophage (rat) RGD PMID:18381617 RGD:4892229 NCBI chr16:36,389,318...36,486,439
Ensembl chr16:36,424,231...36,486,443 		JBrowse link
G Il6ra interleukin 6 receptor, alpha ISO protein:increased expression:male germ cell RGD PMID:16458979 RGD:1625434 NCBI chr 3:89,776,631...89,820,503
Ensembl chr 3:89,771,366...89,820,503 		JBrowse link
G Pecam1 platelet/endothelial cell adhesion molecule 1 ISO protein:increased expression:testes, endothelial cells (rat) RGD PMID:22351899 RGD:6767571 NCBI chr11:106,545,039...106,606,107
Ensembl chr11:106,545,043...106,641,454 		JBrowse link
Experimental Autoimmune Orchitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl2 C-C motif chemokine ligand 2 ISO protein:increased expression:testis (rat) RGD PMID:14638441 RGD:1358455 NCBI chr11:81,926,403...81,928,278
Ensembl chr11:81,926,397...81,928,279 		JBrowse link
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 ISO RGD PMID:16092147 RGD:1624236 NCBI chr11:50,266,084...50,277,355
Ensembl chr11:50,267,817...50,277,355 		JBrowse link
G Hspd1 heat shock protein 1 (chaperonin) ISO RGD PMID:16092147 RGD:1624236 NCBI chr 1:55,116,992...55,127,402
Ensembl chr 1:55,116,994...55,127,402 		JBrowse link
G Inha inhibin alpha ISO protein:decreased expression:serum: RGD PMID:11431143 RGD:8694089 NCBI chr 1:75,483,872...75,487,010
Ensembl chr 1:75,483,721...75,487,010 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 16264
    disease of anatomical entity 15857
      endocrine system disease 6551
        gonadal disease 1398
          testicular disease 171
            orchitis 9
              Experimental Autoimmune Orchitis 4
Path 2
Term Annotations click to browse term
  disease 16264
    disease of anatomical entity 15857
      Urogenital Diseases 5067
        reproductive system disease 3170
          male reproductive system disease 2014
            testicular disease 171
              orchitis 9
                Experimental Autoimmune Orchitis 4
paths to the root