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D-xylulose - Ontology Report - Rat Genome Database

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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:D-xylulose
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Accession:CHEBI:17140 term browser browse the term
Definition:The D-enantiomer of xylulose.
Synonyms:exact_synonym: D-threo-pent-2-ulose
 related_synonym: D-Lyxulose;   D-Xul;   D-threo-Pentulose;   Formula=C5H10O5;   InChI=1S/C5H10O5/c6-1-3(8)5(10)4(9)2-7/h3,5-8,10H,1-2H2/t3-,5+/m1/s1;   InChIKey=ZAQJHHRNXZUBTE-WUJLRWPWSA-N;   SMILES=C(O)C(=O)[C@@H](O)[C@H](O)CO
 alt_id: CHEBI:13035;   CHEBI:21120;   CHEBI:4268;   CHEBI:46514
 xref: CAS:551-84-8;   DrugBank:DB03947;   HMDB:HMDB0001644;   KEGG:C00310;   KNApSAcK:C00019684;   MetaCyc:D-XYLULOSE;   PDBeChem:XUL;   PMID:15234337;   Reaxys:1723052
 cyclic_relationship: is_enantiomer_of CHEBI:17399

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D-xylulose 5-phosphate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Taldo1 transaldolase 1 increases abundance ISO TALDO1 gene mutant form results in increased abundance of xylulose-5-phosphate CTD PMID:19436114 NCBI chr 1:205,923,196...205,933,526
Ensembl chr 1:196,493,589...196,503,974 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19887
    role 19858
      biological role 19856
        biochemical role 19566
          metabolite 19554
            prokaryotic metabolite 18592
              bacterial metabolite 18592
                Escherichia coli metabolite 18503
                  D-xylulose 1
                    1-deoxy-D-xylulose 0
                    1-deoxy-D-xylulose 5-phosphate 0
                    D-xylulose 1,5-bisphosphate 0
                    D-xylulose 5-phosphate 1
Path 2
Term Annotations click to browse term
  CHEBI ontology 19887
    subatomic particle 19885
      composite particle 19885
        hadron 19885
          baryon 19885
            nucleon 19885
              atomic nucleus 19885
                atom 19885
                  main group element atom 19824
                    p-block element atom 19824
                      carbon group element atom 19763
                        carbon atom 19760
                          organic molecular entity 19760
                            heteroorganic entity 19521
                              organochalcogen compound 19282
                                organooxygen compound 19197
                                  carbohydrates and carbohydrate derivatives 15309
                                    carbohydrate 15309
                                      monosaccharide 4881
                                        ketose 1031
                                          ketopentose 2
                                            xylulose 2
                                              D-xylulose 1
                                                1-deoxy-D-xylulose 0
                                                1-deoxy-D-xylulose 5-phosphate 0
                                                D-xylulose 1,5-bisphosphate 0
                                                D-xylulose 5-phosphate 1
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