D11Rat91 Marker Search Result - Rat Genome Database

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General

Marker: D11Rat91

Symbol:

D11Rat91

Previously known as:

R0297-D08; oxsts9316;

RGD ID:

41756

Expected Size:

269 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	11	94,474,734 - 94,475,003 (+)	Marker Load Pipeline
mRatBN7.2	11	80,970,337 - 80,970,606 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	84,745,379 - 84,745,647	NCBI	Rnor6.0
Rnor_5.0	11	87,807,806 - 87,808,074	UniSTS	Rnor5.0
RGSC_v3.4	11	83,221,196 - 83,221,465	RGD	RGSC3.4
RGSC_v3.4	11	83,221,197 - 83,221,465	UniSTS	RGSC3.4
Celera	11	79,805,604 - 79,805,872	UniSTS
RGSC_v3.1	11	83,279,117 - 83,279,386	RGD
RH 2.0 Map	21	118.1	RGD
SHRSP x BN Map	11	36.5499	RGD
Cytogenetic Map	11	q23	UniSTS

Is Marker For:

Strains: ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo
Genes: Klhl6

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Genome-wide linkage analysis of inherited hydrocephalus in the H-Tx rat.	Jones HC, etal., Mamm Genome 2001 Jan;12(1):22-6.
3.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5.	UniSTS Pipeline	RGD automated pipelines
6.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	CAAGGAGTTTGGTGGACACA
Reverse Primer	ACCTGCTTCAACAACCCAAG

Template	TTGACATCTGGCTATGTTAGTGGTTTTTAGGCCATCTGAAAAATAAAGATAAAACAATCAAGGA GTTTGGTGGACACAATCNGGAATGAGAAACTGAATCTCGTTCTATTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTCAGGGGGAGGTAAGGCGATAGAACAGTTTTTGGTCCTCATGCCCATAATTTG AGAGAGTATGGGATACAAGTTGTCCATGAAGGACAGTGGAAGACAGAGAAGACCTCATGTCCCA TTTTTTTCCTGAAGTTCTTGGGTTGTTGAAGCAGGTATAAGGAAACAGGTGATAACTGGAAGCA GAGGTTTGCTGCCTACGAGTGTGAGGTGGGAGAGGACTAAACTGTACTCCCGAAAGATACAGAG AAGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCG CTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAG TGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTG CCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCCAGGGT GGTTTTTCTTTTCACCAGTGAGACGGGCAACAGTGATTGCCCTCACGCTGGCCCTGAGAGATTG CAGCAAGGGTCACGTGGTTTGCCCAGCAGCGAAAATCTGTTGAGGTGGTTCGAATCGCAAATCC TTAATCANAAATACCGAGATANNGAGGTGNCATTGACAGATCNTATAANCGGNTCNCGTAAGNC GAAACGTTTANGGTNCATA

Strain Variation

Strain, Expected Size(s)

ACI/N	271
AVN/Orl	271
BBDP/Rhw	271
BBDR/Rhw	271
BC/CpbU	233
BDIX/Han	235
BDVII/Cub	271
BN-Lx/Cub	271
BN/SsNHsd	273
BP/Cub	271
BUF/Pit	271
COP/OlaHsd	271
DA/PitN	271

DON/Melb	233
F344/Pit	233
FHH/Eur	271
GH/Omr	271
GK/KyoSwe	271
IS/Kyo	267
LE/Mol	271
LEW/Pit	271
LH/Mav	233
LN/Mav	233
LOU/CHan	271
M520/N	233
MHS/Gib	271

MNR/N	233
MNRA/N	271
MNS/Gib	271
MR/Pit	271
NEDH/K	233
NP9	271
ODU/N	233
OKA/Wsl	233
OM/Ztm	271
P5C	271
PVG/Pit	271
SD/Rij	271
SHR/OlaHsd	233

SHRSP/Riv	233
SR/Jr	233
SS/Jr	233
WAG/RijKyo	271
WF/Pit	271
WIST/Nhg	271
WKY/OlaHsd	233
WN/N	271
WTC/Kyo	233

Region

Nucleotide Sequences


GenBank Nucleotide	JH617376.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70208	Niddm22	Non-insulin dependent diabetes mellitus QTL 22	3.61		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	73308487	96070872	Rat
1581565	Pur10	Proteinuria QTL 10		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
4889859	Pur28	Proteinuria QTL 28	19.5	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	11	58928336	99753367	Rat
1549848	Bvd6	Brain ventricular dilatation QTL 6	3.1	0.0001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	11	79618519	99753367	Rat
10450831	Scl80	Serum cholesterol level QTL 80	4.7	0.01	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	11	90461781	96556255	Rat
10058954	Gmadr7	Adrenal mass QTL 7	2.49	0.0049	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	73850894	99753367	Rat
1300135	Rf19	Renal function QTL 19	3.38		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	11	54415391	96071021	Rat
1354656	Bvd3	Brain ventricular dilatation QTL 3	3.64	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	11	82951028	96351019	Rat
2312566	Glom20	Glomerulus QTL 20	3.6	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	57754837	96071021	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	20193549	96351019	Rat
724561	Plsm4	Polydactyly-luxate syndrome (PLS) morphotypes QTL 4		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	11	67962184	99753367	Rat
4889521	Gluco62	Glucose level QTL 62	2.82	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	68599321	96497754	Rat
7411658	Foco27	Food consumption QTL 27	16.2	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	11	69855943	99753367	Rat
631506	Bp104	Blood pressure QTL 104	2.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	73308315	99753367	Rat
1581572	Uae35	Urinary albumin excretion QTL 35		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
1300110	Stl7	Serum triglyceride level QTL 7	4.64		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	11	51071021	96071021	Rat

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	287974	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D11Rat91