D2Rat69 Marker Search Result - Rat Genome Database

Symbol:

D2Rat69

Previously known as:

oxsts6890; R004-B06; R0004-B06;

RGD ID:

34858

Expected Size:

147 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	2	254,121,593 - 254,121,739	NCBI	Rnor6.0
Rnor_5.0	2	272,813,816 - 272,813,962	UniSTS	Rnor5.0
RGSC_v3.4	2	247,295,669 - 247,295,816	RGD	RGSC3.4
RGSC_v3.4	2	247,295,670 - 247,295,816	UniSTS	RGSC3.4
RGSC_v3.1	2	247,310,276 - 247,310,423	RGD
Celera	2	229,879,373 - 229,879,519	UniSTS
RH 2.0 Map	2	1076.7	RGD
SHRSP x BN Map	2	106.7499	RGD
Cytogenetic Map	2	q45	UniSTS

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BBDR/Rhw BC/CpbU BDIX/Han BDVII/Cub BN/SsNHsd BP/Cub BUF/Pit DA/PitN DON/Melb F344/Pit FHH/Eur IS/Kyo LE/Mol LEW/Pit LH/Mav MHS/Gib MNRA/N WN/N WKY/OlaHsd WTC/Kyo LOU/CHan MNR/N MR/Pit ODU/N WF/Pit WIST/Nhg SR/Jr MNS/Gib NP9 OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SHRSP/Riv WAG/RijKyo BBDP.ACI-(D2Mit8-D2Rat69)/Sunn GK/KyoSwe M520/N ACI/N BN-Lx/Cub BBDP.ACI-(D2Mit8-D2Arb16)(D2Rat354-D2Rat69)/Sunn LN/Mav GH/Omr NEDH/K SS/Jr COP/OlaHsd
QTLs: Scl8 Bp175 Alcrsp17 Iddm33
Genes: Adgrl2

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence

Strain Variation

Strain, Expected Size(s)

Region

Nucleotide Sequences


GenBank Nucleotide	CH473952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

External Database Links

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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