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Strain Registration

Strain: BBDP.ACI-(D2Mit8-D2Arb16)(D2Rat354-D2Rat69)/Sunn

Symbol: BBDP.ACI-(D2Mit8-D2Arb16)(D2Rat354-D2Rat69)/Sunn
Strain: BBDP.ACI-(D2Mit8-D2Arb16)(D2Rat354-D2Rat69)
Substrain: Sunn
RGD ID: 10043122
Citation ID: RRID:RGD_10043122
Ontology ID: RS:0003899
Also Known As: BBDP.ACI-(D2Mit8-D2Arb16)(D2Rat354-D2Rat69)/Sunn; 2BAfii
Type: congenic
Available Source: Not Available
Origination: Sunnybrook Research Institute, Toronto, Ontario, Canada
Description: 104 Mb region from ACI.BBDP-(RT1u)(Gimap5)/Sunn is introgressed into the BBDP/WorSunn background which includes Iddm26, Iddm33 QTL regions and a small fragment of Iddm32 the region from D2Rat99 and D2Rat354 is from the background ACI strain
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22143,657,411 - 190,602,963RGD_MAPPER_PIPELINEmRatBN7.2
mRatBN7.22191,987,426 - 191,987,650RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02206,966,406 - 254,121,739RGD_MAPPER_PIPELINERnor6.0
Rnor_6.02149,614,466 - 205,573,168RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02226,390,296 - 272,813,962RGD_MAPPER_PIPELINERnor5.0
Rnor_5.02169,047,256 - 225,003,755RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.42199,719,703 - 247,295,816RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.42148,790,600 - 198,312,656RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. Genetic dissection of Iddm26 in the spontaneously diabetic BBDP rat. Sarmiento J, etal., Genes Immun. 2014 Sep;15(6):378-91. doi: 10.1038/gene.2014.29. Epub 2014 Jun 12.

Region

Position Markers

Flank 1 / 1 (D2Mit8)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22143,657,411 - 143,657,569 (+)MAPPER
Rnor_6.02149,614,466 - 149,614,623NCBI
Rnor_5.02169,047,256 - 169,047,413UniSTS
RGSC_v3.42148,790,600 - 148,790,758RGD
RGSC_v3.42148,790,601 - 148,790,758UniSTS
RGSC_v3.12148,740,564 - 148,740,721RGD
Celera2138,082,182 - 138,082,339UniSTS
RH 3.4 Map2880.5UniSTS
RH 3.4 Map2880.5RGD
RH 2.0 Map2720.9RGD
SHRSP x BN Map258.2598RGD
Cytogenetic Map2 RGD

Flank 2 / 1 (D2Arb16)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22190,602,746 - 190,602,963 (+)MAPPER
Rnor_6.02205,572,952 - 205,573,168NCBI
Rnor_5.02225,003,539 - 225,003,755UniSTS
RGSC_v3.42198,312,439 - 198,312,656RGD
RGSC_v3.42198,312,440 - 198,312,656UniSTS
RGSC_v3.12198,275,193 - 198,275,410RGD
Celera2183,076,093 - 183,076,309UniSTS
SHRSP x BN Map272.7698UniSTS
SHRSP x BN Map272.7698RGD
Cytogenetic Map2q34UniSTS

Flank 1 / 2 (D2Rat354)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22191,987,426 - 191,987,650 (+)MAPPER
Rnor_6.02206,966,406 - 206,966,627NCBI
Rnor_5.02226,390,296 - 226,390,517UniSTS
RGSC_v3.42199,719,703 - 199,719,925RGD
RGSC_v3.42199,719,704 - 199,719,925UniSTS
RGSC_v3.12199,682,458 - 199,682,679RGD
Celera2184,455,188 - 184,455,409UniSTS
RH 3.4 Map21341.2RGD
RH 3.4 Map21341.2UniSTS
RH 2.0 Map21018.8RGD
SHRSP x BN Map274.0098RGD
Cytogenetic Map2q34UniSTS

Flank 2 / 2 (D2Rat69)
Rat AssemblyChrPosition (strand)Source
Rnor_6.02254,121,593 - 254,121,739NCBI
Rnor_5.02272,813,816 - 272,813,962UniSTS
RGSC_v3.42247,295,669 - 247,295,816RGD
RGSC_v3.42247,295,670 - 247,295,816UniSTS
RGSC_v3.12247,310,276 - 247,310,423RGD
Celera2229,879,373 - 229,879,519UniSTS
RH 2.0 Map21076.7RGD
SHRSP x BN Map2106.7499RGD
Cytogenetic Map2q45UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics mean age of onset is 85.7 days as compared to BBDP is 80.8 days 10043114

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-26 BBDP.ACI-(D2Mit8-D2Arb16)(D2Rat354-D2Rat69)/Sunn    BBDP.ACI-(D2Mit8-D2Arb16),(D2Rat354-D2Rat69)/Sunn    Symbol updated 68687 APPROVED
2016-01-26 BBDP.ACI-(D2Mit8-D2Arb16)(D2Rat354-D2Rat69)/Sunn    BBDP.ACI-(D2Mit8-D2Arb16),(D2Rat354-D2Rat69)/Sunn    Name updated 68913 APPROVED
2016-01-26 BBDP.ACI-(D2Mit8-D2Arb16)(D2Rat354-D2Rat69)/Sunn    BBDP.ACI-(D2Mit8-D2Arb16),(D2Rat354-D2Rat69)/Sunn    Symbol updated 68687 APPROVED
2016-01-26 BBDP.ACI-(D2Mit8-D2Arb16)(D2Rat354-D2Rat69)/Sunn    BBDP.ACI-(D2Mit8-D2Arb16),(D2Rat354-D2Rat69)/Sunn    Name updated 68913 APPROVED