Sos1 (SOS Ras/Rac guanine nucleotide exchange factor 1) - Rat Genome Database

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Gene: Sos1 (SOS Ras/Rac guanine nucleotide exchange factor 1) Rattus norvegicus
Analyze
Symbol: Sos1
Name: SOS Ras/Rac guanine nucleotide exchange factor 1
RGD ID: 1310949
Description: Enables SH3 domain binding activity and epidermal growth factor receptor binding activity. Involved in several processes, including Ras protein signal transduction; neurotrophin TRK receptor signaling pathway; and positive regulation of signal transduction. Located in neuronal cell body. Is active in glutamatergic synapse and postsynaptic density. Used to study brain ischemia. Human ortholog(s) of this gene implicated in Noonan syndrome; Noonan syndrome 4; atrial heart septal defect; gingival fibromatosis; and pulmonary valve stenosis. Orthologous to human SOS1 (SOS Ras/Rac guanine nucleotide exchange factor 1); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; insulin signaling pathway; nerve growth factor signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC313845; Son of sevenless homolog 1; Son of sevenless homolog 1 (Drosophila)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Is Marker For: Strains:   NP.P-(D4Rat119-D4Rat55)/Iusm
Candidate Gene For: Alc22
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8620,286,117 - 20,363,350 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl620,286,117 - 20,363,350 (+)EnsemblGRCr8
mRatBN7.2614,533,870 - 14,613,348 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl614,533,360 - 14,611,107 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx614,832,784 - 14,910,104 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0615,154,472 - 15,231,727 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0614,650,751 - 14,727,998 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.063,105,443 - 3,182,977 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl63,104,861 - 3,182,996 (-)Ensemblrn6Rnor6.0
Rnor_5.063,082,456 - 3,159,445 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.463,308,778 - 3,390,661 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera614,210,655 - 14,287,471 (+)NCBICelera
RGSC_v3.163,310,822 - 3,394,313 (-)NCBI
Cytogenetic Map6q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-Tetrandrine  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-methylcholanthrene  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-nitrophenol  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
aflatoxin M1  (ISO)
allyl isothiocyanate  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisdemethoxycurcumin  (ISO)
bisphenol A  (EXP,ISO)
bufalin  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
casticin  (ISO)
CGP 52608  (ISO)
chrysin  (ISO)
clozapine  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cycloheximide  (ISO)
D-glucose  (ISO)
DDT  (ISO)
deguelin  (ISO)
diclofenac  (ISO)
dioxygen  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
dutasteride  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gardiquimod  (ISO)
GDP  (ISO)
glyphosate  (ISO)
GTP  (ISO)
hydrogen peroxide  (ISO)
leflunomide  (ISO)
Mecamylamine  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
miconazole  (ISO)
N-methyl-N-nitrosourea  (EXP)
nickel atom  (ISO)
nicotine  (ISO)
ouabain  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
potassium dichromate  (ISO)
progesterone  (EXP)
protein kinase inhibitor  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
selenium atom  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
testosterone enanthate  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trimethyltin  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (ISO)
troglitazone  (ISO)
tubocurarine  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Local phosphatidylinositol 3,4,5-trisphosphate accumulation recruits Vav2 and Vav3 to activate Rac1/Cdc42 and initiate neurite outgrowth in nerve growth factor-stimulated PC12 cells. Aoki K, etal., Mol Biol Cell. 2005 May;16(5):2207-17. Epub 2005 Feb 23.
2. Comprehensive transcriptome analysis identifies pathways with therapeutic potential in locally advanced cervical cancer. Campos-Parra AD, etal., Gynecol Oncol. 2016 Nov;143(2):406-413. doi: 10.1016/j.ygyno.2016.08.327. Epub 2016 Aug 28.
3. Activation of multiple signaling pathways causes developmental defects in mice with a Noonan syndrome-associated Sos1 mutation. Chen PC, etal., J Clin Invest. 2010 Dec;120(12):4353-65. doi: 10.1172/JCI43910.
4. The role of the PH domain in the signal-dependent membrane targeting of Sos. Chen RH, etal., EMBO J. 1997 Mar 17;16(6):1351-9.
5. EGF-ERBB signalling: towards the systems level. Citri A and Yarden Y, Nat Rev Mol Cell Biol. 2006 Jul;7(7):505-16.
6. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
8. A mutation in the SOS1 gene causes hereditary gingival fibromatosis type 1. Hart TC, etal., Am J Hum Genet. 2002 Apr;70(4):943-54. Epub 2002 Feb 26.
9. Insulin signaling through insulin receptor substrate 1 and 2 in normal liver development. Khamzina L, etal., Gastroenterology 2003 Aug;125(2):572-85.
10. Direct interaction of SOS1 Ras exchange protein with the SH3 domain of phospholipase C-gamma1. Kim MJ, etal., Biochemistry. 2000 Jul 25;39(29):8674-82.
11. Noonan syndrome associated with both a new Jnk-activating familial SOS1 and a de novo RAF1 mutations. Longoni M, etal., Am J Med Genet A. 2010 Sep;152A(9):2176-84. doi: 10.1002/ajmg.a.33564.
12. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
13. IL-6/IL-6 receptor system and its role in physiological and pathological conditions. Mihara M, etal., Clin Sci (Lond). 2012 Feb;122(4):143-59. doi: 10.1042/CS20110340.
14. Adaptor Protein p66Shc: A Link Between Cytosolic and Mitochondrial Dysfunction in the Development of Diabetic Retinopathy. Mishra M, etal., Antioxid Redox Signal. 2019 May 1;30(13):1621-1634. doi: 10.1089/ars.2018.7542. Epub 2018 Oct 3.
15. Blockade of mitogen-activated protein kinase cascade signaling in interleukin 6-independent multiple myeloma cells. Ogata A, etal., Clin Cancer Res. 1997 Jun;3(6):1017-22.
16. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
17. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
18. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
19. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
20. Knockdown of circRNA-Memo1 Reduces Hypoxia/Reoxygenation Injury in Human Brain Endothelial Cells Through miRNA-17-5p/SOS1 Axis. Ren X, etal., Mol Neurobiol. 2022 Apr;59(4):2085-2097. doi: 10.1007/s12035-022-02743-4. Epub 2022 Jan 18.
21. GOA pipeline RGD automated data pipeline
22. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
23. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
24. Germline gain-of-function mutations in SOS1 cause Noonan syndrome. Roberts AE, etal., Nat Genet. 2007 Jan;39(1):70-4. Epub 2006 Dec 3.
25. Stimulation of growth factor receptor signal transduction by activation of voltage-sensitive calcium channels. Rosen LB and Greenberg ME, Proc Natl Acad Sci U S A. 1996 Feb 6;93(3):1113-8.
26. Src-dependent TrkA transactivation is required for pituitary adenylate cyclase-activating polypeptide 38-mediated Rit activation and neuronal differentiation. Shi GX, etal., Mol Biol Cell. 2010 May 1;21(9):1597-608. Epub 2010 Mar 10.
27. Presence of up-stream and downstream components of a mitogen-activated protein kinase pathway in the PSD of the rat forebrain. Suzuki T, etal., Brain Res. 1999 Sep 4;840(1-2):36-44.
28. Gain-of-function SOS1 mutations cause a distinctive form of Noonan syndrome. Tartaglia M, etal., Nat Genet. 2007 Jan;39(1):75-9. Epub 2006 Dec 13.
29. Enhanced expression of SOS1 is detected in prostate cancer epithelial cells from African-American men. Timofeeva OA, etal., Int J Oncol. 2009 Oct;35(4):751-60.
30. SOS1 is the second most common Noonan gene but plays no major role in cardio-facio-cutaneous syndrome. Zenker M, etal., J Med Genet. 2007 Oct;44(10):651-6. Epub 2007 Jun 23.
31. Crosstalk Between MAPK/ERK and PI3K/AKT Signal Pathways During Brain Ischemia/Reperfusion. Zhou J, etal., ASN Neuro. 2015 Oct 6;7(5). pii: 7/5/1759091415602463. doi: 10.1177/1759091415602463. Print 2015 Sep-Oct.
Additional References at PubMed
PMID:1371879   PMID:7731718   PMID:9030684   PMID:10206341   PMID:11352907   PMID:11585837   PMID:12008030   PMID:12477932   PMID:15644420   PMID:16203968   PMID:16483568   PMID:17515907  
PMID:17721087   PMID:21118970   PMID:24043312  


Genomics

Comparative Map Data
Sos1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8620,286,117 - 20,363,350 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl620,286,117 - 20,363,350 (+)EnsemblGRCr8
mRatBN7.2614,533,870 - 14,613,348 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl614,533,360 - 14,611,107 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx614,832,784 - 14,910,104 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0615,154,472 - 15,231,727 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0614,650,751 - 14,727,998 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.063,105,443 - 3,182,977 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl63,104,861 - 3,182,996 (-)Ensemblrn6Rnor6.0
Rnor_5.063,082,456 - 3,159,445 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.463,308,778 - 3,390,661 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera614,210,655 - 14,287,471 (+)NCBICelera
RGSC_v3.163,310,822 - 3,394,313 (-)NCBI
Cytogenetic Map6q12NCBI
SOS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38238,981,549 - 39,124,868 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl238,962,206 - 39,124,345 (-)Ensemblhg38GRCh38
GRCh37239,208,690 - 39,352,009 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36239,066,469 - 39,201,067 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34239,124,615 - 39,259,214NCBI
Celera239,049,411 - 39,188,687 (-)NCBICelera
Cytogenetic Map2p22.1NCBI
HuRef238,947,128 - 39,086,120 (-)NCBIHuRef
CHM1_1239,139,128 - 39,278,182 (-)NCBICHM1_1
T2T-CHM13v2.0238,990,066 - 39,133,839 (-)NCBIT2T-CHM13v2.0
Sos1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391780,701,181 - 80,787,882 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1780,701,180 - 80,787,882 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381780,393,752 - 80,480,453 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1780,393,751 - 80,480,453 (-)Ensemblmm10GRCm38
MGSCv371780,793,092 - 80,879,793 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361780,305,779 - 80,388,265 (-)NCBIMGSCv36mm8
Celera1784,712,016 - 84,797,777 (-)NCBICelera
Cytogenetic Map17E3NCBI
cM Map1750.67NCBI
Sos1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554416,646,385 - 6,713,028 (-)Ensembl
ChiLan1.0NW_0049554416,649,895 - 6,724,271 (-)NCBIChiLan1.0ChiLan1.0
SOS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21287,342,622 - 87,487,223 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A87,346,597 - 87,488,030 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A39,019,046 - 39,162,248 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A39,773,758 - 39,911,964 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A39,773,760 - 39,911,961 (-)EnsemblpanPan2panpan1.1
SOS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11731,007,940 - 31,181,569 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1731,009,257 - 31,142,063 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1730,825,007 - 30,830,255 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01731,664,627 - 31,805,012 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1731,664,631 - 31,805,021 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11730,886,361 - 31,025,725 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01730,956,021 - 31,095,889 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01731,169,723 - 31,309,388 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sos1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629240,733,944 - 40,853,206 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650812,162,547 - 12,281,820 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493650812,162,553 - 12,281,812 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SOS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3101,209,641 - 101,362,723 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.13101,209,568 - 101,366,057 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23107,318,421 - 107,466,093 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SOS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11468,259,509 - 68,404,167 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1468,259,360 - 68,399,895 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604543,577,050 - 43,723,991 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sos1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473820,466,117 - 20,591,910 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473820,466,120 - 20,591,966 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sos1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1712,593,196 - 12,669,243 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sos1
621 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:654
Count of miRNA genes:272
Interacting mature miRNAs:347
Transcripts:ENSRNOT00000009359
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6144788383Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
8693699Alc37Alcohol consumption QTL 372.60.224drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)61371716927053860Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6125740059Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6140163351Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6120510098Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat
8693690Alc35Alcohol consumption QTL 352.20.606drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)61371716927053860Rat

Markers in Region
18.MMHAP91FRF9.seq  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2614,533,047 - 14,533,232 (-)MAPPERmRatBN7.2
Rnor_6.063,183,615 - 3,183,799NCBIRnor6.0
Rnor_5.063,160,083 - 3,160,267UniSTSRnor5.0
RGSC_v3.463,391,320 - 3,391,504UniSTSRGSC3.4
Celera614,209,839 - 14,210,023UniSTS
Cytogenetic Map6q11UniSTS
BE097889  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2614,559,727 - 14,559,890 (-)MAPPERmRatBN7.2
Rnor_6.063,156,791 - 3,156,953NCBIRnor6.0
Rnor_5.063,133,259 - 3,133,421UniSTSRnor5.0
RGSC_v3.463,361,747 - 3,361,909UniSTSRGSC3.4
Celera614,236,212 - 14,236,374UniSTS
RH 3.4 Map646.4UniSTS
Cytogenetic Map6q11UniSTS
RH134803  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2614,609,848 - 14,610,030 (-)MAPPERmRatBN7.2
Rnor_6.063,106,520 - 3,106,701NCBIRnor6.0
Rnor_5.063,083,533 - 3,083,714UniSTSRnor5.0
RGSC_v3.463,309,855 - 3,310,036UniSTSRGSC3.4
Celera614,286,213 - 14,286,394UniSTS
Cytogenetic Map6q11UniSTS
RH137866  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2614,578,630 - 14,578,750 (-)MAPPERmRatBN7.2
Rnor_6.063,138,035 - 3,138,154NCBIRnor6.0
Rnor_5.063,114,690 - 3,114,809UniSTSRnor5.0
RGSC_v3.463,343,333 - 3,343,452UniSTSRGSC3.4
Celera614,255,112 - 14,255,231UniSTS
Cytogenetic Map6q11UniSTS
UniSTS:237713  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2614,532,835 - 14,533,067 (-)MAPPERmRatBN7.2
Rnor_6.063,183,780 - 3,184,011NCBIRnor6.0
Rnor_5.063,160,248 - 3,160,479UniSTSRnor5.0
RGSC_v3.463,391,485 - 3,391,716UniSTSRGSC3.4
Cytogenetic Map6q11UniSTS
D2S1690E  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2614,588,094 - 14,589,343 (-)MAPPERmRatBN7.2
Rnor_6.063,127,438 - 3,128,686NCBIRnor6.0
Rnor_5.063,104,093 - 3,105,341UniSTSRnor5.0
RGSC_v3.463,333,156 - 3,334,404UniSTSRGSC3.4
Celera614,264,576 - 14,265,824UniSTS
Cytogenetic Map6q11UniSTS


Related Rat Strains
The following Strains have been annotated to Sos1
NP.P-(D4Rat119-D4Rat55)/Iusm    


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000009359   ⟹   ENSRNOP00000009359
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl620,286,117 - 20,363,350 (+)Ensembl
mRatBN7.2 Ensembl614,533,870 - 14,611,107 (+)Ensembl
Rnor_6.0 Ensembl63,104,861 - 3,182,996 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116736   ⟹   ENSRNOP00000096553
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl620,306,900 - 20,363,350 (+)Ensembl
mRatBN7.2 Ensembl614,533,360 - 14,611,107 (+)Ensembl
RefSeq Acc Id: NM_001100716   ⟹   NP_001094186
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8620,286,117 - 20,363,350 (+)NCBI
mRatBN7.2614,533,870 - 14,611,107 (+)NCBI
Rnor_6.063,105,443 - 3,182,977 (-)NCBI
Rnor_5.063,082,456 - 3,159,445 (-)NCBI
RGSC_v3.463,308,778 - 3,390,661 (-)RGD
Celera614,210,655 - 14,287,471 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001094186 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI00643 (Get FASTA)   NCBI Sequence Viewer  
  EDM02758 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000009359
  ENSRNOP00000009359.6
  ENSRNOP00000096553.2
RefSeq Acc Id: NP_001094186   ⟸   NM_001100716
- UniProtKB: D4A3T0 (UniProtKB/TrEMBL),   A6H9Q3 (UniProtKB/TrEMBL),   A0A8I6B4D6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009359   ⟸   ENSRNOT00000009359
Ensembl Acc Id: ENSRNOP00000096553   ⟸   ENSRNOT00000116736
Protein Domains
DH   N-terminal Ras-GEF   PH   Ras-GEF

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A3T0-F1-model_v2 AlphaFold D4A3T0 1-1319 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310949 AgrOrtholog
BioCyc Gene G2FUF-38528 BioCyc
Ensembl Genes ENSRNOG00000007106 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009359 ENTREZGENE
  ENSRNOT00000009359.9 UniProtKB/TrEMBL
  ENSRNOT00000116736.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
  1.10.840.10 UniProtKB/TrEMBL
  1.20.900.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  6.10.250.3060 UniProtKB/TrEMBL
  Son of sevenless (SoS) protein Chain: S domain 1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7930046 IMAGE-MGC_LOAD
InterPro DBL_dom_sf UniProtKB/TrEMBL
  DH-domain UniProtKB/TrEMBL
  Histone-fold UniProtKB/TrEMBL
  PH_type UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
  Ras-like_GEF UniProtKB/TrEMBL
  Ras-like_Gua-exchang_fac_N UniProtKB/TrEMBL
  Ras_G-nucl-exch_fac_CS UniProtKB/TrEMBL
  Ras_GEF_dom UniProtKB/TrEMBL
  RASGEF_cat_dom_sf UniProtKB/TrEMBL
  RasGRF_CDC25 UniProtKB/TrEMBL
  SOS1_NGEF_PH UniProtKB/TrEMBL
KEGG Report rno:313845 UniProtKB/TrEMBL
MGC_CLONE MGC:124890 IMAGE-MGC_LOAD
NCBI Gene 313845 ENTREZGENE
PANTHER PTHR23113 UniProtKB/TrEMBL
  SON OF SEVENLESS HOMOLOG 1 UniProtKB/TrEMBL
Pfam RasGEF UniProtKB/TrEMBL
  RasGEF_N UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
  SOS1_NGEF_PH UniProtKB/TrEMBL
PhenoGen Sos1 PhenoGen
PROSITE DH_2 UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
  RASGEF UniProtKB/TrEMBL
  RASGEF_CAT UniProtKB/TrEMBL
  RASGEF_NTER UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007106 RatGTEx
SMART RasGEF UniProtKB/TrEMBL
  RasGEFN UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP DH-domain UniProtKB/TrEMBL
  Histone-fold UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
  Ras_GEF UniProtKB/TrEMBL
UniProt A0A8I6B4D6 ENTREZGENE, UniProtKB/TrEMBL
  A6H9Q3 ENTREZGENE, UniProtKB/TrEMBL
  D4A3T0 ENTREZGENE, UniProtKB/TrEMBL
  Q497A5_RAT UniProtKB/TrEMBL
  Q9Z1I1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-20 Sos1  SOS Ras/Rac guanine nucleotide exchange factor 1  Sos1  Son of sevenless homolog 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Sos1  Son of sevenless homolog 1 (Drosophila)  Sos1_predicted  Son of sevenless homolog 1 (Drosophila) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Sos1_predicted  Son of sevenless homolog 1 (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED