Rpl29 (ribosomal protein L29) - Rat Genome Database

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Gene: Rpl29 (ribosomal protein L29) Rattus norvegicus
Analyze
Symbol: Rpl29
Name: ribosomal protein L29
RGD ID: 62069
Description: Predicted to enable heparin binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within cell-substrate adhesion; fibroblast proliferation; and translation. Located in ribosome. Part of cytosolic large ribosomal subunit. Orthologous to human RPL29 (ribosomal protein L29); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene; aflatoxin B1.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60S ribosomal protein L29; large ribosomal subunit protein eL29; P23
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: LOC100526655   Rpl29-ps1   Rpl29-ps15   Rpl29-ps2   Rpl29-ps23   Rpl29-ps24   Rpl29l2  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88115,056,443 - 115,949,677 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8115,947,394 - 115,950,565 (+)EnsemblGRCr8
mRatBN7.28107,068,929 - 107,070,963 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl128,631,628 - 8,632,095 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl8107,068,480 - 107,070,914 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8112,691,899 - 112,693,933 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08110,891,075 - 110,893,109 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08108,733,855 - 108,735,889 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08115,131,228 - 115,133,401 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,131,367 - 115,133,401 (+)Ensemblrn6Rnor6.0
Rnor_5.08114,495,464 - 114,497,498 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48111,573,459 - 111,575,493 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8106,380,871 - 106,382,905 (+)NCBICelera
RGSC_v3.18111,592,913 - 111,594,948 (+)NCBI
Cytogenetic Map8q32NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. The primary structure of rat ribosomal protein L29. Chan YL, etal., Biochem Biophys Res Commun 1993 Apr 30;192(2):583-9.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Selective high-efficiency cross-linking of mammalian ribosomal proteins with cleavable thiol-directed heterobifunctional reagents: identification and binding directions of major protein complexes. Hultin T Biochim Biophys Acta. 1986 Aug 15;872(3):226-35.
6. Gene expression profiling suggests a pathological role of human bone marrow-derived mesenchymal stem cells in aging-related skeletal diseases. Jiang SS, etal., Aging (Albany NY). 2011 Jul;3(7):672-84.
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. Identification of neighboring protein pairs in rat liver 60S ribosomal subunits cross-linked with dimethyl suberimidate or dimethyl 3,3'-dithiobispropionimidate. Uchiumi T, etal., J Biochem. 1980 Oct;88(4):1033-44.
Additional References at PubMed
PMID:1544448   PMID:1735422   PMID:9219540   PMID:9737974   PMID:11259264   PMID:12477932   PMID:12962325   PMID:15489334   PMID:16452087   PMID:17195189   PMID:19946888   PMID:22658674  
PMID:22681889   PMID:24930395   PMID:25468996  


Genomics

Comparative Map Data
Rpl29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88115,056,443 - 115,949,677 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8115,947,394 - 115,950,565 (+)EnsemblGRCr8
mRatBN7.28107,068,929 - 107,070,963 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl128,631,628 - 8,632,095 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl8107,068,480 - 107,070,914 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8112,691,899 - 112,693,933 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08110,891,075 - 110,893,109 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08108,733,855 - 108,735,889 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08115,131,228 - 115,133,401 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,131,367 - 115,133,401 (+)Ensemblrn6Rnor6.0
Rnor_5.08114,495,464 - 114,497,498 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48111,573,459 - 111,575,493 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8106,380,871 - 106,382,905 (+)NCBICelera
RGSC_v3.18111,592,913 - 111,594,948 (+)NCBI
Cytogenetic Map8q32NCBI
RPL29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38351,993,522 - 51,995,895 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl351,993,522 - 51,995,953 (-)Ensemblhg38GRCh38
GRCh37352,027,538 - 52,029,911 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,002,684 - 52,004,998 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34352,002,684 - 52,004,998NCBI
Celera352,006,920 - 52,009,228 (-)NCBICelera
Cytogenetic Map3p21.2NCBI
HuRef352,090,984 - 52,093,304 (-)NCBIHuRef
CHM1_1351,980,247 - 51,982,561 (-)NCBICHM1_1
T2T-CHM13v2.0352,026,442 - 52,028,821 (-)NCBIT2T-CHM13v2.0
Rpl29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,306,631 - 106,308,768 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9106,306,653 - 106,308,767 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm389106,428,889 - 106,431,568 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,429,454 - 106,431,568 (+)Ensemblmm10GRCm38
MGSCv379106,331,870 - 106,333,898 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369106,287,640 - 106,289,668 (+)NCBIMGSCv36mm8
Celera9106,056,937 - 106,058,955 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map957.49NCBI
Rpl29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555323,633,377 - 3,635,590 (-)Ensembl
ChiLan1.0NW_0049555323,633,260 - 3,636,068 (-)NCBIChiLan1.0ChiLan1.0
RPL29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2251,988,050 - 51,990,436 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1351,992,820 - 51,995,116 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0351,935,053 - 51,937,412 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RPL29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,727,161 - 37,729,738 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,708,857 - 37,711,231 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02038,077,938 - 38,080,329 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2038,077,749 - 38,080,328 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12037,441,554 - 37,447,226 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,850,328 - 37,852,707 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02038,135,177 - 38,137,563 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpl29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560266,576,559 - 66,587,413 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365293,337,061 - 3,339,691 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365293,337,056 - 3,339,683 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,119,539 - 34,121,859 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11334,119,541 - 34,121,842 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,316,234 - 37,318,518 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap13q21-q22NCBI
RPL29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,362,348 - 13,365,013 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041153,541,343 - 153,544,070 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247305,807,029 - 5,810,138 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Rpl29
7367 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:85
Count of miRNA genes:75
Interacting mature miRNAs:77
Transcripts:ENSRNOT00000014849
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)897492344116428905Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8111249511117802327Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_017150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC086404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X60744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X68283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000014849   ⟹   ENSRNOP00000014849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8115,947,394 - 115,949,677 (+)Ensembl
mRatBN7.2 Ensembl8107,068,480 - 107,070,914 (+)Ensembl
Rnor_6.0 Ensembl8115,131,367 - 115,133,401 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000072406   ⟹   ENSRNOP00000065157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1213,745,456 - 13,745,923 (+)Ensembl
mRatBN7.2 Ensembl128,631,628 - 8,632,095 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000158949   ⟹   ENSRNOP00000100353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8115,947,749 - 115,950,565 (+)Ensembl
RefSeq Acc Id: NM_017150   ⟹   NP_058846
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88115,947,643 - 115,949,677 (+)NCBI
mRatBN7.28107,068,929 - 107,070,963 (+)NCBI
Rnor_6.08115,131,367 - 115,133,401 (+)NCBI
Rnor_5.08114,495,464 - 114,497,498 (+)NCBI
RGSC_v3.48111,573,459 - 111,575,493 (+)RGD
Celera8106,380,871 - 106,382,905 (+)RGD
Sequence:
RefSeq Acc Id: XM_063265010   ⟹   XP_063121080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88115,947,629 - 115,949,677 (+)NCBI
RefSeq Acc Id: XM_063265011   ⟹   XP_063121081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88115,947,898 - 115,949,677 (+)NCBI
RefSeq Acc Id: XM_063265012   ⟹   XP_063121082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88115,056,443 - 115,949,677 (+)NCBI
RefSeq Acc Id: XM_063265014   ⟹   XP_063121084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88115,056,443 - 115,949,677 (+)NCBI
RefSeq Acc Id: NP_058846   ⟸   NM_017150
- UniProtKB: P25886 (UniProtKB/Swiss-Prot),   A6I2R0 (UniProtKB/TrEMBL),   M0R6U8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000014849   ⟸   ENSRNOT00000014849
RefSeq Acc Id: XP_063121082   ⟸   XM_063265012
- Peptide Label: isoform X1
- UniProtKB: P25886 (UniProtKB/Swiss-Prot),   A6I2R0 (UniProtKB/TrEMBL),   M0R6U8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121084   ⟸   XM_063265014
- Peptide Label: isoform X1
- UniProtKB: P25886 (UniProtKB/Swiss-Prot),   A6I2R0 (UniProtKB/TrEMBL),   M0R6U8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121080   ⟸   XM_063265010
- Peptide Label: isoform X1
- UniProtKB: P25886 (UniProtKB/Swiss-Prot),   A6I2R0 (UniProtKB/TrEMBL),   M0R6U8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121081   ⟸   XM_063265011
- Peptide Label: isoform X1
- UniProtKB: P25886 (UniProtKB/Swiss-Prot),   A6I2R0 (UniProtKB/TrEMBL),   M0R6U8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000065157   ⟸   ENSRNOT00000072406
Ensembl Acc Id: ENSRNOP00000100353   ⟸   ENSRNOT00000158949

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P25886-F1-model_v2 AlphaFold P25886 1-156 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696248
Promoter ID:EPDNEW_R6772
Type:multiple initiation site
Name:Rpl29_1
Description:ribosomal protein L29
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08115,131,360 - 115,131,420EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:62069 AgrOrtholog
BioCyc Gene G2FUF-29240 BioCyc
Ensembl Genes ENSRNOG00000011138 Ensembl, ENTREZGENE
  ENSRNOG00000050264 Ensembl
Ensembl Transcript ENSRNOT00000158949 ENTREZGENE
Gene3D-CATH 6.10.140.1730 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7304319 IMAGE-MGC_LOAD
InterPro Ribosomal_L29e UniProtKB/Swiss-Prot
KEGG Report rno:29283 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105456 IMAGE-MGC_LOAD
NCBI Gene 29283 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L29 UniProtKB/Swiss-Prot
  PTHR12884 UniProtKB/Swiss-Prot
Pfam Ribosomal_L29e UniProtKB/Swiss-Prot
PhenoGen Rpl29 PhenoGen
RatGTEx ENSRNOG00000011138 RatGTEx
  ENSRNOG00000050264 RatGTEx
UniProt A0A8L2Q7Y8_RAT UniProtKB/TrEMBL
  A0ABK0L6J6_RAT UniProtKB/TrEMBL
  A6I2R0 ENTREZGENE, UniProtKB/TrEMBL
  M0R6U8 ENTREZGENE, UniProtKB/TrEMBL
  P25886 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Rpl29  ribosomal protein L29      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_protein 155 amino acids 61734