RPL29 (ribosomal protein L29) - Rat Genome Database

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Gene: RPL29 (ribosomal protein L29) Canis lupus familiaris
Analyze
Symbol: RPL29
Name: ribosomal protein L29
RGD ID: 12157478
Description: ENCODES a protein that exhibits heparin binding (ortholog); INVOLVED IN cell-substrate adhesion (ortholog); fibroblast proliferation (ortholog); multicellular organism growth (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; FOUND IN cytoplasm (ortholog); cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosolic large ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L29; cell surface heparin binding protein HIP
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,727,161 - 37,729,738 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,708,857 - 37,711,231 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02038,077,938 - 38,080,329 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2038,077,749 - 38,080,328 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12037,441,554 - 37,447,226 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,850,328 - 37,852,707 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02038,135,177 - 38,137,563 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:10964405   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RPL29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,727,161 - 37,729,738 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,708,857 - 37,711,231 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02038,077,938 - 38,080,329 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2038,077,749 - 38,080,328 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12037,441,554 - 37,447,226 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,850,328 - 37,852,707 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02038,135,177 - 38,137,563 (+)NCBIUU_Cfam_GSD_1.0
RPL29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38351,993,522 - 51,995,895 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl351,993,522 - 51,995,895 (-)EnsemblGRCh38hg38GRCh38
GRCh37352,027,538 - 52,029,911 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,002,684 - 52,004,998 (-)NCBINCBI36Build 36hg18NCBI36
Build 34352,002,684 - 52,004,998NCBI
Celera352,006,920 - 52,009,228 (-)NCBICelera
Cytogenetic Map3p21.2NCBI
HuRef352,090,984 - 52,093,304 (-)NCBIHuRef
CHM1_1351,980,247 - 51,982,561 (-)NCBICHM1_1
T2T-CHM13v2.0352,026,442 - 52,028,821 (-)NCBIT2T-CHM13v2.0
Rpl29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,306,631 - 106,308,768 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9106,306,653 - 106,308,767 (+)EnsemblGRCm39 Ensembl
GRCm389106,428,889 - 106,431,568 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,429,454 - 106,431,568 (+)EnsemblGRCm38mm10GRCm38
MGSCv379106,331,870 - 106,333,898 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369106,287,640 - 106,289,668 (+)NCBIMGSCv36mm8
Celera9106,056,937 - 106,058,955 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map957.49NCBI
Rpl29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88115,056,443 - 115,949,677 (+)NCBIGRCr8
mRatBN7.28107,068,929 - 107,070,963 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8107,068,480 - 107,070,914 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8112,691,899 - 112,693,933 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08110,891,075 - 110,893,109 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08108,733,855 - 108,735,889 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08115,131,228 - 115,133,401 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,131,367 - 115,133,401 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08114,495,464 - 114,497,498 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48111,573,459 - 111,575,493 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18111,592,913 - 111,594,948 (+)NCBI
Celera8106,380,871 - 106,382,905 (+)NCBICelera
Cytogenetic Map8q32NCBI
Rpl29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555323,633,377 - 3,635,590 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555323,633,260 - 3,636,068 (-)NCBIChiLan1.0ChiLan1.0
RPL29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2251,988,050 - 51,990,436 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1351,992,820 - 51,995,116 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0351,935,053 - 51,937,412 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
Rpl29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560266,576,559 - 66,587,413 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365293,337,056 - 3,339,683 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,119,539 - 34,121,859 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,119,541 - 34,121,842 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,316,234 - 37,318,518 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap13q21-q22NCBI
RPL29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,362,348 - 13,365,013 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041153,541,343 - 153,544,070 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247305,807,029 - 5,810,138 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPL29
47 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High 2 1 3 2
Medium 5 5 20 6 5 6 3 6 12 8 10 4
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00845054864   ⟹   ENSCAFP00845043148
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2038,077,749 - 38,080,328 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845054871   ⟹   ENSCAFP00845043153
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2038,077,978 - 38,080,210 (+)Ensembl
RefSeq Acc Id: XM_005632466   ⟹   XP_005632523
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12037,727,333 - 37,729,738 (+)NCBI
Dog10K_Boxer_Tasha2037,708,857 - 37,711,231 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038427592   ⟹   XP_038283520
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02038,077,938 - 38,080,329 (+)NCBI
RefSeq Acc Id: XM_038503299   ⟹   XP_038359227
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12037,441,554 - 37,447,226 (+)NCBI
RefSeq Acc Id: XM_038566279   ⟹   XP_038422207
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02038,135,177 - 38,137,563 (+)NCBI
RefSeq Acc Id: XM_038630437   ⟹   XP_038486365
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02037,850,328 - 37,852,707 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005632523   ⟸   XM_005632466
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MQM0 (UniProtKB/TrEMBL),   A0A8I3QD64 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038359227   ⟸   XM_038503299
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038486365   ⟸   XM_038630437
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038283520   ⟸   XM_038427592
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MQM0 (UniProtKB/TrEMBL),   A0A8I3QD64 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038422207   ⟸   XM_038566279
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MQM0 (UniProtKB/TrEMBL),   A0A8I3QD64 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845043148   ⟸   ENSCAFT00845054864
RefSeq Acc Id: ENSCAFP00845043153   ⟸   ENSCAFT00845054871


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006102 UniProtKB/TrEMBL
  ENSCAFG00030008363 UniProtKB/TrEMBL
  ENSCAFG00845030865 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000009879.5 UniProtKB/TrEMBL
  ENSCAFT00000031869.5 UniProtKB/TrEMBL
  ENSCAFT00030015383.1 UniProtKB/TrEMBL
  ENSCAFT00845054864.1 UniProtKB/TrEMBL
  ENSCAFT00845054871 ENTREZGENE
  ENSCAFT00845054871.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.1730 UniProtKB/TrEMBL
InterPro Ribosomal_L29e UniProtKB/TrEMBL
NCBI Gene RPL29 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L29 UniProtKB/TrEMBL
  60S RIBOSOMAL PROTEIN L29 UniProtKB/TrEMBL
  PTHR12884 UniProtKB/TrEMBL
Pfam Ribosomal_L29e UniProtKB/TrEMBL
UniProt A0A8C0MQM0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3QB33_CANLF UniProtKB/TrEMBL
  A0A8I3QD64 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SQB0_CANLF UniProtKB/TrEMBL
  Q9XST9_CANLF UniProtKB/TrEMBL