Rpl29 (ribosomal protein L29) - Rat Genome Database

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Gene: Rpl29 (ribosomal protein L29) Chinchilla lanigera
Analyze
Symbol: Rpl29
Name: ribosomal protein L29
RGD ID: 8743813
Description: ENCODES a protein that exhibits heparin binding (ortholog); structural constituent of ribosome (ortholog); INVOLVED IN cell-substrate adhesion (ortholog); fibroblast proliferation (ortholog); multicellular organism growth (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; FOUND IN cytoplasm (ortholog); cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosolic large ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L29
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555323,633,377 - 3,635,590 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555323,633,260 - 3,636,068 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rpl29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555323,633,377 - 3,635,590 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555323,633,260 - 3,636,068 (-)NCBIChiLan1.0ChiLan1.0
RPL29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38351,993,522 - 51,995,895 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl351,993,522 - 51,995,895 (-)EnsemblGRCh38hg38GRCh38
GRCh37352,027,538 - 52,029,911 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,002,684 - 52,004,998 (-)NCBINCBI36Build 36hg18NCBI36
Build 34352,002,684 - 52,004,998NCBI
Celera352,006,920 - 52,009,228 (-)NCBICelera
Cytogenetic Map3p21.2NCBI
HuRef352,090,984 - 52,093,304 (-)NCBIHuRef
CHM1_1351,980,247 - 51,982,561 (-)NCBICHM1_1
T2T-CHM13v2.0352,026,442 - 52,028,821 (-)NCBIT2T-CHM13v2.0
Rpl29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,306,631 - 106,308,768 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9106,306,653 - 106,308,767 (+)EnsemblGRCm39 Ensembl
GRCm389106,428,889 - 106,431,568 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,429,454 - 106,431,568 (+)EnsemblGRCm38mm10GRCm38
MGSCv379106,331,870 - 106,333,898 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369106,287,640 - 106,289,668 (+)NCBIMGSCv36mm8
Celera9106,056,937 - 106,058,955 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map957.49NCBI
Rpl29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88115,056,443 - 115,949,677 (+)NCBIGRCr8
mRatBN7.28107,068,929 - 107,070,963 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8107,068,480 - 107,070,914 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8112,691,899 - 112,693,933 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08110,891,075 - 110,893,109 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08108,733,855 - 108,735,889 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08115,131,228 - 115,133,401 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8115,131,367 - 115,133,401 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08114,495,464 - 114,497,498 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48111,573,459 - 111,575,493 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18111,592,913 - 111,594,948 (+)NCBI
Celera8106,380,871 - 106,382,905 (+)NCBICelera
Cytogenetic Map8q32NCBI
RPL29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2251,988,050 - 51,990,436 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1351,992,820 - 51,995,116 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0351,935,053 - 51,937,412 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RPL29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,727,161 - 37,729,738 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2037,708,857 - 37,711,231 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02038,077,938 - 38,080,329 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2038,077,749 - 38,080,328 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12037,441,554 - 37,447,226 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,850,328 - 37,852,707 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02038,135,177 - 38,137,563 (+)NCBIUU_Cfam_GSD_1.0
Rpl29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560266,576,559 - 66,587,413 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365293,337,056 - 3,339,683 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,119,539 - 34,121,859 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11334,119,541 - 34,121,842 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,316,234 - 37,318,518 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap13q21-q22NCBI
RPL29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,362,348 - 13,365,013 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041153,541,343 - 153,544,070 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247305,807,029 - 5,810,138 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000016416   ⟹   ENSCLAP00000016252
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555323,633,377 - 3,635,590 (-)Ensembl
RefSeq Acc Id: XM_005410341   ⟹   XP_005410398
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555323,633,260 - 3,636,068 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005410342   ⟹   XP_005410399
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555323,633,260 - 3,635,943 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005410398 (Get FASTA)   NCBI Sequence Viewer  
  XP_005410399 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016252
  ENSCLAP00000016252.1
Reference Protein Sequences
RefSeq Acc Id: XP_005410398   ⟸   XM_005410341
- Sequence:
RefSeq Acc Id: XP_005410399   ⟸   XM_005410342
- Sequence:
RefSeq Acc Id: ENSCLAP00000016252   ⟸   ENSCLAT00000016416


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011185 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016416 ENTREZGENE
  ENSCLAT00000016416.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.1730 UniProtKB/TrEMBL
InterPro Ribosomal_L29e UniProtKB/TrEMBL
NCBI Gene Rpl29 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L29 UniProtKB/TrEMBL
  PTHR12884 UniProtKB/TrEMBL
Pfam Ribosomal_L29e UniProtKB/TrEMBL
UniProt A0A8C2YQP3_CHILA UniProtKB/TrEMBL