Bp60 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bp60 (Blood pressure QTL 60) Rattus norvegicus

Symbol: Bp60
Name: Blood pressure QTL 60
RGD ID: 70158
Trait: arterial blood pressure trait   (VT:2000000)    
Measurement Type: systolic blood pressure   (CMO:0000004)    
LOD Score: 3.0
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22031,614,284 - 44,396,023RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02033,354,783 - 45,719,230RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02035,134,762 - 47,429,142RGDRnor5.0
RGSC_v3.42030,941,362 - 36,641,808RGDRGSC3.4
RGSC_v3.12030,955,163 - 36,655,607RGD
Cross Type: F2
Strains Crossed: MHS/Gib MNS/Gib 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
hypertension  (IDA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
MHS/Gib  (IEA)
MNS/Gib  (IEA)

References

References - curated
# Reference Title Reference Citation
1. QTL Data Transfer QTL data import from the RatMap database
2. Genetic mapping of blood pressure quantitative trait loci in Milan hypertensive rats. Zagato L, etal., Hypertension 2000 Nov;36(5):734-9.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
619894Plnphospholamban203262953732639559Rat
3335PkibcAMP-dependent protein kinase inhibitor beta203696517237062190Rat
69312Fabp7fatty acid binding protein 7203712319337126725Rat
2641FynFYN proto-oncogene, Src family tyrosine kinase204276773342960903Rat
2104Amd1adenosylmethionine decarboxylase 1204369578343711476Rat
3028Marcksmyristoylated alanine rich protein kinase C substrate204068531540691012Rat
68395Hsf2heat shock transcription factor 2203681986436847490Rat
631438Naglt1Na+ dependent glucose transporter 1204341155043423873Rat
727843Serinc1serine incorporator 1203685006236868999Rat
619976Hdac2histone deacetylase 2204054824440571609Rat
621423Frkfyn-related Src family tyrosine kinase203826541638371038Rat
69197Slc16a10solute carrier family 16 member 10204345481943567839Rat
1305214Nt5dc15'-nucleotidase domain containing 1203810567738208613Rat
1305131Twf2-ps1twinfilin, actin-binding protein, homolog 2 (Drosophila), pseudogene 1203641197736413147Rat
1305435Cdk19cyclin-dependent kinase 19204377040943910629Rat
1306379Hs3st5heparan sulfate-glucosamine 3-sulfotransferase 5204010687640417661Rat
1306048Tube1tubulin, epsilon 1204255239042570324Rat
1304770Mfsd4b2major facilitator superfamily domain containing 4B2204334460143353061Rat
1307726Tspyl1TSPY-like 1203808200338084562Rat
1307063Cdc40cell division cycle 40204427308044325605Rat
1309512Gopcgolgi associated PDZ and coiled-coil motif containing203172761731776904Rat
1307211Dcbld1discoidin, CUB and LCCL domain containing 1203161855631711697Rat
1307434Gtf3c6general transcription factor 3C subunit 6204365640043668382Rat
2371Col10a1collagen type X alpha 1 chain203818310338189488Rat
1306653Tspyl4TSPY-like 4203809875638100752Rat
1307755Nepnnephrocan203178660731799458Rat
1560557Mcm9minichromosome maintenance 9 homologous recombination repair factor203281821932929577Rat
1559810Cd46l1CD46 molecule like 1203399640433997405Rat
1311294Fam184afamily with sequence similarity 184, member A203293442433056626Rat
1310891Man1a1mannosidase, alpha, class 1A, member 1203320250933385747Rat
1306906Rpf2ribosome production factor 2 homolog204363000343651477Rat
1307879Nus1NUS1 dehydrodolichyl diphosphate synthase subunit203181181731838562Rat
1307087Rev3lREV3 like, DNA directed polymerase zeta catalytic subunit204313184143290102Rat
1308699Msl3l2male-specific lethal 3-like 2203546887735477025Rat
1561777Mfsd4b2l2major facilitator superfamily domain containing 4B2 like 2204336915143394397Rat
1561954Wasf1WASP family member 1204432581544372999Rat
1310495Mfsd4b2l1major facilitator superfamily domain containing 4B2 like 1204343685743450064Rat
1564120Ccn6cellular communication network factor 6204256930942585126Rat
1564857Mettl24methyltransferase like 24204414212644264651Rat
1311941Asf1aanti-silencing function 1A histone chaperone203289396232908808Rat
1560062Lama4laminin subunit alpha 4204239226842533347Rat
1559576Slc35f1solute carrier family 35, member F1203203035032418762Rat
2690Gja1gap junction protein, alpha 1203575600735768481Rat
1559971Mfsd4b1major facilitator superfamily domain containing 4B1204332441943333869Rat
1561288Phb1-ps19prohibitin 1, pseudogene 19203620463736229806Rat
1359277Smpdl3asphingomyelin phosphodiesterase, acid-like 3A203713259237155567Rat
1566244Tatdn1-ps1TatD DNase domain containing 1, pseudogene 1203445576234456682Rat
1587209Gpbp1l3GC-rich promoter binding protein 1-like 3204375551043756937Rat
1590918Gapdh-ps96Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 96203592138735922419Rat
1595988Prdx1-ps7peroxiredoxin 1, pseudogene 7203222438032239928Rat
1595123DdoD-aspartate oxidase204409082344109962Rat
1593240Traf3ip2Traf3 interacting protein 2204301140543054654Rat
1595984Ndufb4-ps9NADH:ubiquinone oxidoreductase subunit B4, pseudogene 9203274390032744361Rat
1596742Hdac1-ps5Histone deacetylase 1, pseudogene 5204148776841489655Rat
1595968Rab1a-ps5RAB1A, member RAS oncogene family, pseudogene 5203468878734689383Rat
1592810Slc22a16solute carrier family 22 member 16204397280844068447Rat
1589355Tuba1b-ps10tubulin, alpha 1B, pseudogene 10203407129034072085Rat
1595943Ldha-ps19lactate dehydrogenase A, pseudogene 19203578551135786667Rat
1595809Ppid-ps15peptidylprolyl isomerase D, pseudogene 15203985367939854858Rat
2300149Fam229bfamily with sequence similarity 229, member B204253885342552355Rat
2319745Cep85lcentrosomal protein 85-like203256841732739449Rat
2320089LOC100361476vasculin-like protein 1-like204375480743757289Rat
2318275Rps8-ps3ribosomal protein S8, pseudogene 3203974441039745949Rat
2320899Rpl13a-ps2ribosomal protein L13A, pseudogene 2204051332440513977Rat
2323245Ppig-ps2peptidylprolyl isomerase G, pseudogene 2204329303643295575Rat
2323304Rfpl4bret finger protein-like 4B204225726042258155Rat
2323599Tbc1d32TBC1 domain family, member 32203535986535590992Rat
2323619Setdb2-ps1SET domain bifurcated histone lysine methyltransferase 2, pseudogene 1204061202740613238Rat
7511826LOC102555751uncharacterized LOC102555751204088737440907114Rat
7732121LOC102550544M-phase phosphoprotein 6-like204248850342489485Rat
7709358LOC102552402uncharacterized LOC102552402203598070436021996Rat
7680830LOC102550301uncharacterized LOC102550301204185382441870096Rat
9266578LOC103694462inactive serine/threonine-protein kinase VRK3 pseudogene203573191735732340Rat
11464501LOC108349077uncharacterized LOC108349077203802061238037305Rat
11367462LOC108353252uncharacterized LOC108353252203912757939128591Rat
11369035Rpl15-ps15ribosomal protein L15, pseudogene 15203586102135862082Rat
11453714LOC108349085uncharacterized LOC108349085204362246043633675Rat
11421040LOC108349075uncharacterized LOC108349075203681248236819862Rat
11427217LOC108349026uncharacterized LOC108349026203904342639060401Rat
11390416LOC108349019SUMO-conjugating enzyme UBC9 pseudogene203950542939513411Rat
11381497LOC108349082claudin-7 pseudogene204277150542783040Rat
11497081LOC108349074uncharacterized LOC108349074203583876635887270Rat
11497658LOC108349079uncharacterized LOC108349079203850680138552694Rat
11514788LOC108349084uncharacterized LOC108349084204301048443012747Rat
11491188LOC108349081uncharacterized LOC108349081204261668642683998Rat
41379544LOC120098955uncharacterized LOC120098955204430558444310865Rat
41323209LOC120098996uncharacterized LOC120098996204069315440704593Rat
41277635LOC120098940uncharacterized LOC120098940204240983442416834Rat
41089220Duxl3double homeobox like 3203783126137849815Rat
41114181LOC120099020small nucleolar RNA SNORA17204212931742129446Rat
41384760LOC120098880uncharacterized LOC120098880204071545440742025Rat
41142560LOC120098878uncharacterized LOC120098878203225566632262192Rat
41142806LOC120099067small nucleolar RNA SNORA4203874338138743516Rat
41360633LOC120099026small nucleolar RNA SNORA17203897368238973796Rat
41092752Tmem258-ps3transmembrane protein 258, pseudogene 3204375248743754095Rat
41119808LOC120099037small nucleolar RNA U3204366869343668906Rat
41187369Duxl1double homeobox like 1203735038237351203Rat
41121790LOC120098819uncharacterized LOC120098819204424004944259158Rat
41178998LOC120098941uncharacterized LOC120098941204252790542538809Rat
41212620LOC120099078small nucleolar RNA SNORA17204353217843532308Rat
41393454LOC120099027small nucleolar RNA SNORA17203468475734684858Rat
41345323LOC120098865uncharacterized LOC120098865204103986141068149Rat
41269162Snrpc-ps2small nuclear ribonucleoprotein polypeptide C, pseudogene 2204100608241008256Rat
41070913LOC120099035U6atac minor spliceosomal RNA204314812643148232Rat
41128795LOC120099028small nucleolar RNA SNORA26203299299332993113Rat
41083251Ube2n-ps7ubiquitin-conjugating enzyme E2N, pseudogene 7203538987935390578Rat
41199725LOC120098816uncharacterized LOC120098816204369119343692218Rat
41275321Timm21-ps1translocase of inner mitochondrial membrane 21, pseudogene 1204172839641734758Rat
41275458LOC120098964uncharacterized LOC120098964203305818033064701Rat
40952207Snora69small nucleolar RNA, H/ACA box 69204361046543610598Rat
41000584Trnap-agg35transfer RNA proline (anticodon AGG) 35204092288640922967Rat
40933646LOC120098872uncharacterized LOC120098872204308087543084280Rat
40991786Trnat-agu35transfer RNA threonine (anticodon AGU) 35204044118440441258Rat
40996192LOC120098877uncharacterized LOC120098877203203416232051064Rat
41074627LOC120099038small nucleolar RNA U3203778470937784782Rat
41048958LOC120099043U6 spliceosomal RNA204113029141130397Rat
41077662Dux4-ps6double homeobox 4, pseudogene 6203766443037665255Rat
41255492Mcm9lminichromosome maintenance 9 homologous recombination repair factor like203289414332894801Rat
41033244LOC120098933uncharacterized LOC120098933203820868538226207Rat
41301348LOC120099071small nucleolar RNA SNORA9204365520143655333Rat
41043910LOC120099041U6 spliceosomal RNA204380607843806184Rat
41308985LOC120098823uncharacterized LOC120098823204333397543341553Rat
41022072LOC120098931uncharacterized LOC120098931203821119438231482Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
11106D20Arb6296203706125337061562Ratregion
35993D20Rat11127203723675537236906Ratregion
35993D20Rat11127203773437637734527Ratregion
37446D20Rat54200204019744540197655Ratregion
37570D20Rat38223204439581444396023Ratregion
35244D20Rat9137203246350232463632Ratregion
35327D20Rat10158203425743634257594Ratregion
36785D20Rat12160203349793633498097Ratregion
38216D20Rat22231203161428431614507Ratregion
40366D20Rat52173203527228935272448Ratregion
38760D20Rat39218204169061141690832Ratregion
38762D20Rat40210203440214934402348Ratregion
39424D20Rat55207204288681942887012Ratregion
41496D20Rat56136204423415344234298Ratregion
42434D20Rat81149204379143943791616Ratregion
41550D20Rat53145203511737135117517Ratregion
43146D20Rat76248203327829533278545Ratregion
43147D20Rat77128203214526432145390Ratregion
45689D20Got32114203161428331614397Ratregion
45693D20Got31229203219695332197182Ratregion
45694D20Got34240203313768733137927Ratregion
45698D20Got39271204269761142697882Ratregion
45699D20Got38261203878970238789963Ratregion
45700D20Got49149204231455642314705Ratregion
60274D20Got37296203875325938753555Ratregion
45695D20Got35235203507309335073328Ratregion
67239D20Arb9362203507297135073333Ratregion
7206804RH136178232204057115240571386Ratregion
7193110Col10a10203818754838188135Ratregion
7192557BF391491195203810574638105941Ratregion
7193080AI577391122204257017442570296Ratregion
5037115D6S2058139203684663336846772Ratregion
5035546Tspyl434203808283238083266Ratregion
5034141RH141521183204259151842591701Ratregion
5026238RH131445206204301057043010776Ratregion
5034464BG372291181204426443144264612Ratregion
5034526BI274433213204253309842533311Ratregion
5034536AA901167211204068561740685828Ratregion
5026754RH133403182204246750342467685Ratregion
5029343RH144435139204397569143975830Ratregion
5029645BF386557162204367385243674014Ratregion
5027165163489204437275644372845Ratregion
5029749BE102382188203808409538084283Ratregion
5034900AI23618891204345502343455114Ratregion
5032819RH135418188203810051238100700Ratregion
5033105RH137616203204295326742953470Ratregion
5033189RH137912169204390994543910114Ratregion
5030673BE107575205204156056241560768Ratregion
5028119D10Mit257.1236203551006635510302Ratregion
5030871BE120998165203218512432185289Ratregion
5051955RH94756112204069053340690645Ratregion
5052155RH94871297203818803338188329Ratregion
5053957RH142948164204239517642395340Ratregion
5056701RH144530298204436771644368014Ratregion
5055777RH143996128203284519132845319Ratregion
5059940BF400175168203270576232705930Ratregion
5053129RH142470156203267149832671654Ratregion
5059066BI284998168204375868943758857Ratregion
5059268BF387907174203324285433243028Ratregion
5049950RH133775180203808436238084542Ratregion
5050840RH134288210204437264444372854Ratregion
5050162RH133897196203685012436850320Ratregion
5052781RH142270155204328962943289784Ratregion
5043296RH129945150204365594243656092Ratregion
5044224RH130480180203183647131836652Ratregion
5044536RH130660187203183819631838383Ratregion
5046456RH131763156203837104638371202Ratregion
5045666RH131309182204296062142960803Ratregion
5045810RH131392211203547670035476911Ratregion
5047030RH132094211203379829033798501Ratregion
5049702RH133632200203263761132637811Ratregion
5042098RH129238208204256955142569759Ratregion
5048590RH132991219203826567038265889Ratregion
5048640RH133020220203179916131799381Ratregion
5048648RH133024217203816335338163570Ratregion
5039954RH128004156204332450143324657Ratregion
5039958RH128006207203576809935768306Ratregion
5043362RH129982195204391038943910584Ratregion
5072440RH136850210203810269838102908Ratregion
5075254RH138488180203820747938207659Ratregion
5077216RH139629180203818906938189249Ratregion
5077922RH140037206204068588540686091Ratregion
5078250RH140230198204430684344307041Ratregion
5078756RH140534146204339397243394118Ratregion
5078760RH140536244203263762432637868Ratregion
5078110RH140149193203839568238395875Ratregion
5080184RH141433218203551556435515782Ratregion
5080210RH141448217204090534140905796Ratregion
5070990RH134823182203172782931728011Ratregion
5072856RH137093162204305446343054625Ratregion
5071712RH135241208203576809935768307Ratregion
5073302RH137357213204041716640417379Ratregion
5063364BI301706194204224221142242405Ratregion
5065100BF405827166204281367442813840Ratregion
5066612AU048254150203388131733881467Ratregion
5068122AU047335109203281765132817760Ratregion
5068390AU047175170203509070235090897Ratregion
5068390AU047175170203509072735090897Ratregion
5068856AU046883197204385939043859582Ratregion
5069256AU046616277204126019441260366Ratregion
5069340AU046561141203813535838135499Ratregion
5063606BE107833154203810730538107459Ratregion
5062320BE106510192203819321038193402Ratregion
5060826BE104555184203241624732416431Ratregion
5064348BI302056158204376027243760430Ratregion
5064382BF39918090203241280132412891Ratregion
5066050BE116640185203222109132221276Ratregion
5061036BF389775155204362237843622534Ratregion
5063084BF398320142203241658432416726Ratregion
5063130BF410372202204301668243016884Ratregion
5066420AU048367141203763005937630096Ratregion
5066420AU048367141203793154137931682Ratregion
5063168BE113818161204292919342929354Ratregion
5064900BE108698160203173651631736676Ratregion
5066452AU048348224204395898643959210Ratregion
5084106AI013034126204257072042570846Ratregion
5086102BM383904198204391531143915509Ratregion
5087209BQ209200213204377318243773395Ratregion
5087404Col10a1425203818802438188449Ratregion
5089303AU049075298203553560335535902Ratregion
5083367AW521654247204068539240685639Ratregion
5083633BE100931151203314265533142806Ratregion
5085032AI008992216203170915431709370Ratregion
5080952RH141878187204345951643459703Ratregion
5082767BF390057182204430112844301310Ratregion
5083183BF390947207204321059643210803Ratregion
5086415AW529882150203712527137125421Ratregion
5083445BE100029150203263134832631498Ratregion
5503242UniSTS:237466304204173326341733567Ratregion
5506052UniSTS:498241372203320474633205118Ratregion
5506535FYN_1578639204295929842959937Ratregion
5501165PMC151788P1333203576634835766681Ratregion
5502136MARC_5393-5394:996690344:1417203586104535861462Ratregion
5507327GDB:1924960204371124943711393Ratregion
Position Markers

Flank 1: (D20Rat22)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22031,614,284 - 31,614,507 (+)MAPPER
Rnor_6.02033,354,783 - 33,355,005NCBI
Rnor_5.02035,134,762 - 35,134,984UniSTS
RGSC_v3.42030,941,363 - 30,941,585UniSTS
RGSC_v3.42030,941,362 - 30,941,585RGD
RGSC_v3.12030,955,163 - 30,955,385RGD
Celera2033,012,026 - 33,012,248UniSTS
RH 3.4 Map20316.5RGD
RH 3.4 Map20316.5UniSTS
RH 2.0 Map20333.2RGD
SHRSP x BN Map2022.43RGD
FHH x ACI Map2014.6699RGD
Cytogenetic Map20q11UniSTS
Peak: (D20Rat40)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22034,402,149 - 34,402,348 (+)MAPPER
Rnor_6.02036,480,476 - 36,480,674NCBI
Rnor_5.02038,227,923 - 38,228,121UniSTS
RGSC_v3.42033,791,487 - 33,791,685UniSTS
RGSC_v3.42033,791,486 - 33,791,684RGD
RGSC_v3.12033,805,286 - 33,805,484RGD
Celera2035,776,428 - 35,776,626UniSTS
RH 3.4 Map20339.2RGD
RH 3.4 Map20339.2UniSTS
RH 2.0 Map20385.6RGD
SHRSP x BN Map2023.9599RGD
Flank 2: (D20Rat38)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22044,395,814 - 44,396,023 (+)MAPPER
Rnor_6.02045,719,022 - 45,719,230NCBI
Rnor_5.02047,428,934 - 47,429,142UniSTS
Celera2045,200,109 - 45,200,317UniSTS
RH 3.4 Map20476.2UniSTS
RH 3.4 Map20476.2RGD
RH 2.0 Map20499.4RGD
FHH x ACI Map2031.8198RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat
70158Bp60Blood pressure QTL 603arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)203161428444396023Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Bp60

RGD Curation Notes
Note Type Note Reference