Gene: LOC120099041 (U6 spliceosomal RNA) Rattus norvegicus |
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Analyze |
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Symbol: |
LOC120099041 |
Name: |
U6 spliceosomal RNA |
RGD ID: |
41043910 |
Description: |
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Type: |
snrna
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RefSeq Status: |
MODEL |
RGD Orthologs |
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Alliance Orthologs |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
mRatBN7.2 - mRatBN7.2 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 20 | 45,360,579 - 45,360,685 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 20 | 43,806,078 - 43,806,184 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 20 | 43,806,078 - 43,806,184 (+) | Ensembl | | mRatBN7.2 Ensembl | | | Cytogenetic Map | 20 | q12 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
Comparative Map Data
LOC120099041 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 20 | 45,360,579 - 45,360,685 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 20 | 43,806,078 - 43,806,184 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 20 | 43,806,078 - 43,806,184 (+) | Ensembl | | mRatBN7.2 Ensembl | | | Cytogenetic Map | 20 | q12 | NCBI | | | | |
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RNU6-364P (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 7 | 96,341,140 - 96,341,246 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 7 | 96,341,140 - 96,341,246 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 7 | 95,970,452 - 95,970,558 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 7 | q21.3 | NCBI | | | | | CHM1_1 | 7 | 95,900,485 - 95,900,591 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 7 | 97,577,035 - 97,577,141 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Gm22281 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 1 | 63,614,647 - 63,614,749 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 1 | 63,614,647 - 63,614,749 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 1 | 63,575,488 - 63,575,590 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 1 | 63,575,488 - 63,575,590 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | Cytogenetic Map | 1 | C2 | NCBI | | | | |
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QTLs in Region (mRatBN7.2)
2305926 | Iddm37 | Insulin dependent diabetes mellitus QTL 37 | 6 | | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 20 | 1527842 | 46527842 | Rat | 1641915 | Colcr9 | Colorectal carcinoma resistance QTL 9 | 2.97 | 0.0024 | intestine integrity trait (VT:0010554) | benign colorectal tumor number (CMO:0001795) | 20 | 1530655 | 46530655 | Rat | 1598816 | Memor12 | Memory QTL 12 | 2.4 | | exploratory behavior trait (VT:0010471) | average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674) | 20 | 2606836 | 47606836 | Rat | 7411652 | Foco24 | Food consumption QTL 24 | | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 20 | 11757515 | 54435887 | Rat | 9590092 | Insglur9 | Insulin/glucose ratio QTL 9 | 18.38 | 0.001 | blood insulin amount (VT:0001560) | calculated plasma insulin level (CMO:0002170) | 20 | 11757515 | 54435887 | Rat | 4889610 | Pancm3 | Pancreatic morphology QTL 3 | 3.75 | 0.001 | pancreas mass (VT:0010144) | pancreas wet weight (CMO:0000626) | 20 | 17617832 | 47606836 | Rat | 2317880 | Alcrsp25 | Alcohol response QTL 25 | 2.3 | | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 20 | 17697550 | 54435887 | Rat | 2303626 | Vencon10 | Ventilatory control QTL 10 | | 0.001 | respiration trait (VT:0001943) | respiration rate (CMO:0000289) | 20 | 19190721 | 54435887 | Rat | 2303578 | Gluco50 | Glucose level QTL 50 | 2 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 20 | 25106722 | 54435887 | Rat | 2303587 | Bw93 | Body weight QTL 93 | 13 | | body mass (VT:0001259) | body weight (CMO:0000012) | 20 | 25106722 | 54435887 | Rat | 2300188 | Bmd68 | Bone mineral density QTL 68 | 6.4 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 20 | 25106722 | 54435887 | Rat | 1331747 | Hrtrt16 | Heart rate QTL 16 | 3.163 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 20 | 25209734 | 54435887 | Rat | 1598869 | Memor6 | Memory QTL 6 | 3.1 | | exploratory behavior trait (VT:0010471) | total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443) | 20 | 29244388 | 54435887 | Rat | 70158 | Bp60 | Blood pressure QTL 60 | 3 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 20 | 31614284 | 44396023 | Rat | |
Expression
Sequence
RefSeq Acc Id: |
ENSRNOT00000111773 |
Type: |
CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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mRatBN7.2 Ensembl | 20 | 43,806,078 - 43,806,184 (+) | Ensembl |
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RefSeq Acc Id: |
XR_005497864 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 20 | 45,360,579 - 45,360,685 (+) | NCBI | mRatBN7.2 | 20 | 43,806,078 - 43,806,184 (+) | NCBI |
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Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2021-01-27 |
LOC120099041 |
U6 spliceosomal RNA |
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Symbol and Name status set to provisional |
70820 |
PROVISIONAL |
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