Slc31a1 (solute carrier family 31, member 1) - Rat Genome Database

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Gene: Slc31a1 (solute carrier family 31, member 1) Mus musculus
Analyze
Symbol: Slc31a1
Name: solute carrier family 31, member 1
RGD ID: 735684
MGI Page MGI
Description: Enables copper ion transmembrane transporter activity; silver ion transmembrane transporter activity; and xenobiotic transmembrane transporter activity. Involved in angiogenesis; transition metal ion transport; and xenobiotic transport. Acts upstream of or within establishment of localization in cell and intracellular copper ion homeostasis. Located in several cellular components, including basolateral plasma membrane; endosome; and intercalated disc. Is expressed in several structures, including adrenal gland; alimentary system; early embryo; genitourinary system; and nervous system. Orthologous to human SLC31A1 (solute carrier family 31 member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930445G01Rik; AI787263; AU016967; copper transporter 1; Ctr; Ctr1; high affinity copper uptake protein 1; solute carrier family 13 (sodium/sulphate symporters), member 1; solute carrier family 31 member 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39462,278,821 - 62,310,006 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl462,278,964 - 62,310,006 (+)EnsemblGRCm39 Ensembl
GRCm38462,360,583 - 62,391,769 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl462,360,727 - 62,391,769 (+)EnsemblGRCm38mm10GRCm38
MGSCv37462,021,735 - 62,052,803 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36461,847,110 - 61,878,123 (+)NCBIMGSCv36mm8
Celera461,032,896 - 61,063,964 (+)NCBICelera
Cytogenetic Map4B3NCBI
cM Map433.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2,2-tetramine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3-Iodothyronamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
5-aza-2'-deoxycytidine  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
amiloride  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (EXP)
bathocuproine disulfonic acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
C60 fullerene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carboplatin  (EXP,ISO)
carnosine  (EXP,ISO)
casticin  (EXP)
celecoxib  (EXP,ISO)
chlorpromazine  (ISO)
chromium(6+)  (EXP)
cisplatin  (EXP,ISO)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (EXP,ISO)
coumestrol  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (ISO)
cytochalasin D  (ISO)
D-penicillamine  (ISO)
diazinon  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (EXP,ISO)
diuron  (ISO)
dorsomorphin  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
fructose  (ISO)
fumonisin B1  (EXP)
genistein  (ISO)
gentamycin  (ISO)
glutathione  (ISO)
graphite  (ISO)
hydrogen peroxide  (EXP)
irinotecan  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
lactacystin  (ISO)
lamivudine  (ISO)
lead diacetate  (EXP,ISO)
lead(0)  (ISO)
lipopolysaccharide  (EXP)
lovastatin  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (ISO)
methyl beta-cyclodextrin  (ISO)
methyl methanesulfonate  (ISO)
Methylazoxymethanol acetate  (ISO)
methylmercury chloride  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nitrofen  (ISO)
oxaliplatin  (EXP,ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
platinum  (ISO)
platinum(0)  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
silver(1+) nitrate  (ISO)
sirolimus  (ISO)
sodium dichromate  (ISO)
streptozocin  (ISO)
tamoxifen  (EXP)
tert-butyl hydroperoxide  (EXP)
tetrachloromethane  (EXP,ISO)
tetrathiomolybdate(2-)  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
valdecoxib  (ISO)
valproic acid  (ISO)
vanadium atom  (ISO)
vanadium(0)  (ISO)
Y-27632  (ISO)
zearalenone  (ISO)
zidovudine  (ISO)
zinc acetate  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Membrane transporters as mediators of Cisplatin effects and side effects. Ciarimboli G Scientifica (Cairo). 2012;2012:473829. doi: 10.6064/2012/473829. Epub 2012 Nov 25.
2. Contributions of rat Ctr1 to the uptake and toxicity of copper and platinum anticancer drugs in dorsal root ganglion neurons. Liu JJ, etal., Biochem Pharmacol. 2013 Jan 15;85(2):207-15. doi: 10.1016/j.bcp.2012.10.023. Epub 2012 Nov 1.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Subcellular targets of cisplatin cytotoxicity: an integrated view. Sancho-Martinez SM, etal., Pharmacol Ther. 2012 Oct;136(1):35-55. doi: 10.1016/j.pharmthera.2012.07.003. Epub 2012 Jul 14.
8. Dysregulation of intracellular copper trafficking pathway in a mouse model of mutant copper/zinc superoxide dismutase-linked familial amyotrophic lateral sclerosis. Tokuda E, etal., J Neurochem. 2009 Oct;111(1):181-91. doi: 10.1111/j.1471-4159.2009.06310.x. Epub 2009 Jul 27.
Additional References at PubMed
PMID:8889548   PMID:9831461   PMID:10349636   PMID:10725249   PMID:10922068   PMID:10974539   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11391004   PMID:11391005   PMID:12177073  
PMID:12370430   PMID:12466851   PMID:12477932   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16847145   PMID:16950140  
PMID:17620605   PMID:18554416   PMID:18799693   PMID:19095764   PMID:19144690   PMID:20444417   PMID:20569931   PMID:20699218   PMID:21267068   PMID:21677750   PMID:21731673   PMID:21873635  
PMID:22290441   PMID:22354499   PMID:22670529   PMID:22684009   PMID:22802922   PMID:22842628   PMID:24167251   PMID:24614111   PMID:24717435   PMID:24967972   PMID:25378701   PMID:27143361  
PMID:27542194   PMID:28507097   PMID:28894175   PMID:28973536   PMID:28986383   PMID:30550785   PMID:31002737   PMID:32381719   PMID:33232911   PMID:33932339   PMID:35027734   PMID:35320362  
PMID:35433682   PMID:36232742   PMID:36675183   PMID:37254056   PMID:38376274  


Genomics

Comparative Map Data
Slc31a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39462,278,821 - 62,310,006 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl462,278,964 - 62,310,006 (+)EnsemblGRCm39 Ensembl
GRCm38462,360,583 - 62,391,769 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl462,360,727 - 62,391,769 (+)EnsemblGRCm38mm10GRCm38
MGSCv37462,021,735 - 62,052,803 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36461,847,110 - 61,878,123 (+)NCBIMGSCv36mm8
Celera461,032,896 - 61,063,964 (+)NCBICelera
Cytogenetic Map4B3NCBI
cM Map433.11NCBI
SLC31A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389113,221,544 - 113,264,492 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9113,221,544 - 113,264,492 (+)EnsemblGRCh38hg38GRCh38
GRCh379115,983,824 - 116,026,772 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369115,023,689 - 115,066,593 (+)NCBINCBI36Build 36hg18NCBI36
Build 349113,063,421 - 113,106,325NCBI
Celera986,631,426 - 86,674,386 (+)NCBICelera
Cytogenetic Map9q32ENTREZGENE
HuRef985,591,243 - 85,634,236 (+)NCBIHuRef
CHM1_19116,130,594 - 116,173,508 (+)NCBICHM1_1
T2T-CHM13v2.09125,420,370 - 125,463,332 (+)NCBIT2T-CHM13v2.0
Slc31a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8580,830,574 - 80,859,810 (+)NCBIGRCr8
mRatBN7.2575,814,744 - 75,844,241 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl575,814,743 - 75,844,228 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx578,214,842 - 78,241,772 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0580,031,936 - 80,058,869 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0580,007,446 - 80,034,378 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0578,222,504 - 78,249,358 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl578,222,504 - 78,249,358 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0582,341,969 - 82,371,285 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4579,359,420 - 79,385,988 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1579,364,532 - 79,391,101 (+)NCBI
Celera574,756,941 - 74,783,647 (+)NCBICelera
Cytogenetic Map5q24NCBI
Slc31a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541914,220,495 - 14,264,699 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541914,221,258 - 14,264,288 (-)NCBIChiLan1.0ChiLan1.0
SLC31A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,113,476 - 26,156,513 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1926,115,835 - 26,158,851 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0984,319,304 - 84,362,288 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19112,691,503 - 112,734,352 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9112,691,503 - 112,734,352 (+)Ensemblpanpan1.1panPan2
SLC31A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11167,590,087 - 67,628,947 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1167,591,080 - 67,625,798 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1165,994,878 - 66,033,741 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01168,714,951 - 68,753,806 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1168,715,210 - 68,812,959 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11167,232,618 - 67,271,432 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01167,254,684 - 67,293,582 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01168,000,439 - 68,039,329 (+)NCBIUU_Cfam_GSD_1.0
Slc31a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947182,901,798 - 182,934,079 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936559331,917 - 364,852 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936559333,461 - 364,737 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC31A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,868,332 - 253,894,449 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,868,389 - 253,893,135 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21284,727,786 - 284,753,055 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap1q28-q2.13NCBI
SLC31A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11226,307,308 - 26,348,701 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1226,311,334 - 26,348,694 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603516,453,718 - 16,495,422 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc31a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476021,832,908 - 21,849,576 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476021,832,924 - 21,879,089 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc31a1
764 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2245
Count of miRNA genes:680
Interacting mature miRNAs:833
Transcripts:ENSMUST00000084526, ENSMUST00000122092
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
1357877Synch1_msynechia 1 (mouse)Not determined42870992562710107Mouse
1301990Arvm1_mautoimmune renal vasculitis 1 (mouse)Not determined42933264663332776Mouse
1301792Hdlq10_mHDL QTL 10 (mouse)Not determined43585970769859853Mouse
1300977Mopkd1_mmodifier of polycystic kidney disease progression 1 (mouse)Not determined43655083970550967Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
1302116Bbaa1_mB.burgdorferi-associated arthritis 1 (mouse)Not determined43825093072251078Mouse
10412178Habiir2_mhyperoxic acute lung injury imprinted region 2 (mouse)Not determined43945212663283678Mouse
1301786Bpq3_mblood pressure QTL 3 (mouse)Not determined44240224076402381Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
1301941Mmtg1_mmodifier of mammary tumor growth 1 (mouse)Not determined44565844283099157Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
12879977Bod2_mbone length and organs 2 (mouse)44628353180283678Mouse
10043880Adip23_madiposity 23 (mouse)Not determined44628353180283678Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
10449022Aanq1_maristolochic acid nephrotoxicity QTL 1 (mouse)44660382680603826Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
11532688Mh_mmodifier of hemostasis (mouse)44830477582304775Mouse
25314308Mlh1fc1_mMLH1 foci count 1 (mouse)44850000076918237Mouse
1301995Lprm1_mlymphoproliferation modifier 1 (mouse)Not determined45010026284100408Mouse
1301213Lgth3_mbody length 3 (mouse)Not determined45010026284100408Mouse
13207572Spir2_mStreptococcus pneumoniae infection resistance 2 (mouse)45068279588510637Mouse
1301033Abbp2_mA/J and C57BL/6 blood pressure 2 (mouse)Not determined45355083993763305Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
26884434Zlq1_mzygomatic length QTL 1, 5 week (mouse)453700000103257197Mouse
13524838Hbasrq1a_mhabituation of the acoustic startle response QTL 1a (mouse)45447158988471589Mouse
13524841Hbasrq1_mhabituation of the acoustic startle response QTL 1 (mouse)45447158988471589Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
27095934Ulnl2_mulna length 2, 5 week (mouse)45770000094788237Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
10043964Obq26_mobesity QTL 26 (mouse)Not determined45904725193047251Mouse
1357507Synch2_msynechia 2 (mouse)Not determined46014527794145424Mouse
1301190Cd4ts2_mCD4 T cell subset 2 (mouse)Not determined46014527794145424Mouse
1357443Lhyp_mlung hyperpermeability (mouse)Not determined46045401166764818Mouse
25394561Skmw53_mskeletal muscle weight 53, TA (mouse)46213829369838031Mouse

Markers in Region
AU016967  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38462,389,121 - 62,389,224UniSTSGRCm38
MGSCv37462,050,155 - 62,050,258UniSTSGRCm37
Celera461,061,316 - 61,061,419UniSTS
Cytogenetic Map4C1-C2UniSTS
Whitehead/MRC_RH4979.16UniSTS
AI787263  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38462,391,559 - 62,391,690UniSTSGRCm38
MGSCv37462,052,593 - 62,052,724UniSTSGRCm37
Celera461,063,754 - 61,063,885UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map4C1-C2UniSTS
Whitehead/MRC_RH4979.51UniSTS
Slc31a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4C1-C2UniSTS
cM Map433.11UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000084526   ⟹   ENSMUSP00000081574
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl462,278,964 - 62,310,006 (+)Ensembl
GRCm38.p6 Ensembl462,360,727 - 62,391,769 (+)Ensembl
RefSeq Acc Id: ENSMUST00000122092   ⟹   ENSMUSP00000112822
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl462,303,738 - 62,310,006 (+)Ensembl
GRCm38.p6 Ensembl462,385,501 - 62,391,769 (+)Ensembl
RefSeq Acc Id: NM_175090   ⟹   NP_780299
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39462,278,938 - 62,310,006 (+)NCBI
GRCm38462,360,701 - 62,391,769 (+)NCBI
MGSCv37462,021,735 - 62,052,803 (+)RGD
Celera461,032,896 - 61,063,964 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006537711   ⟹   XP_006537774
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39462,278,821 - 62,310,006 (+)NCBI
GRCm38462,360,583 - 62,391,769 (+)NCBI
Sequence:
RefSeq Acc Id: NP_780299   ⟸   NM_175090
- UniProtKB: Q3UAJ9 (UniProtKB/Swiss-Prot),   Q8BXJ1 (UniProtKB/Swiss-Prot),   Q8K211 (UniProtKB/Swiss-Prot),   Q3TDB6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006537774   ⟸   XM_006537711
- Peptide Label: isoform X1
- UniProtKB: Q3UAJ9 (UniProtKB/Swiss-Prot),   Q8BXJ1 (UniProtKB/Swiss-Prot),   Q8K211 (UniProtKB/Swiss-Prot),   Q3TDB6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000081574   ⟸   ENSMUST00000084526
RefSeq Acc Id: ENSMUSP00000112822   ⟸   ENSMUST00000122092

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K211-F1-model_v2 AlphaFold Q8K211 1-196 view protein structure

Promoters
RGD ID:6836424
Promoter ID:MM_KWN:37947
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000107461,   NM_001045528,   OTTMUST00000000680,   OTTMUST00000002460,   UC008TEJ.1,   UC008TEM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36462,020,466 - 62,021,857 (+)MPROMDB
RGD ID:6836404
Promoter ID:MM_KWN:37948
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Liver
Transcripts:UC008TEP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36462,046,409 - 62,046,909 (+)MPROMDB
RGD ID:6883592
Promoter ID:EPDNEW_M5247
Type:initiation region
Name:Slc31a1_1
Description:Mus musculus solute carrier family 31, member 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38462,360,749 - 62,360,809EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1333843 AgrOrtholog
Ensembl Genes ENSMUSG00000066150 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000084526 ENTREZGENE
  ENSMUST00000084526.12 UniProtKB/Swiss-Prot
  ENSMUST00000122092.2 UniProtKB/TrEMBL
InterPro Cop_transporter UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20529 UniProtKB/Swiss-Prot
MGD MGI:1333843 ENTREZGENE
NCBI Gene 20529 ENTREZGENE
PANTHER HIGH AFFINITY COPPER UPTAKE PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12483 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ctr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc31a1 PhenoGen
UniProt A8Y5P1_MOUSE UniProtKB/TrEMBL
  COPT1_MOUSE UniProtKB/Swiss-Prot
  Q3TDB6 ENTREZGENE, UniProtKB/TrEMBL
  Q3UAJ9 ENTREZGENE
  Q8BXJ1 ENTREZGENE
  Q8K211 ENTREZGENE
UniProt Secondary Q3UAJ9 UniProtKB/Swiss-Prot
  Q8BXJ1 UniProtKB/Swiss-Prot