ABCG2A (ATP binding cassette subfamily G member 2A) - Rat Genome Database

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Gene: ABCG2A (ATP binding cassette subfamily G member 2A) Sus scrofa
Analyze
Symbol: ABCG2A (Ensembl: ABCG2)
Name: ATP binding cassette subfamily G member 2A (Ensembl:ATP-binding cassette, sub-family G (WHITE), member 2)
RGD ID: 13956643
Description: ENCODES a protein that exhibits amide transmembrane transporter activity (ortholog); ATPase-coupled transmembrane transporter activity (ortholog); biotin transmembrane transporter activity (ortholog); INVOLVED IN biotin transport (ortholog); cellular detoxification (ortholog); cellular response to dexamethasone stimulus (ortholog); PARTICIPATES IN docetaxel pharmacodynamics pathway; doxorubicin pharmacokinetics pathway; erlotinib pharmacodynamics pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); acute megakaryocytic leukemia (ortholog); acute myeloid leukemia (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); external side of apical plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ABCG2; ATP-binding cassette sub-family G member 2; ATP-binding cassette, sub-family G (WHITE), member 2; BMDP; brain multidrug resistance protein; broad substrate specificity ATP-binding cassette transporter ABCG2; urate exporter
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8130,889,684 - 130,945,393 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18130,853,414 - 130,945,388 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28140,193,291 - 140,228,765 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:12054514   PMID:14681463   PMID:17145712   PMID:22301074   PMID:26661076   PMID:30032202  


Genomics

Comparative Map Data
ABCG2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8130,889,684 - 130,945,393 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18130,853,414 - 130,945,388 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28140,193,291 - 140,228,765 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABCG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38488,090,264 - 88,231,626 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl488,090,150 - 88,231,628 (-)EnsemblGRCh38hg38GRCh38
GRCh37489,011,416 - 89,152,778 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36489,230,440 - 89,299,035 (-)NCBINCBI36Build 36hg18NCBI36
Build 34489,370,018 - 89,436,901NCBI
Celera486,303,350 - 86,371,627 (-)NCBICelera
Cytogenetic Map4q22.1NCBI
HuRef484,757,887 - 84,903,974 (-)NCBIHuRef
CHM1_1488,988,243 - 89,128,985 (-)NCBICHM1_1
T2T-CHM13v2.0491,416,761 - 91,562,592 (-)NCBIT2T-CHM13v2.0
Abcg2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39658,561,476 - 58,669,436 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl658,561,508 - 58,672,661 (+)EnsemblGRCm39 Ensembl
GRCm38658,584,491 - 58,692,451 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl658,584,523 - 58,695,676 (+)EnsemblGRCm38mm10GRCm38
MGSCv37658,546,666 - 58,642,445 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36658,526,250 - 58,622,029 (+)NCBIMGSCv36mm8
Celera660,752,972 - 60,848,739 (+)NCBICelera
Cytogenetic Map6B3NCBI
cM Map627.82NCBI
Abcg2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8489,006,056 - 89,132,915 (+)NCBIGRCr8
mRatBN7.2487,676,241 - 87,802,757 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl487,745,319 - 87,802,409 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx492,961,189 - 93,018,372 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0488,736,572 - 88,793,756 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0487,105,627 - 87,162,776 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0488,765,441 - 88,890,268 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl488,832,178 - 88,890,621 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04153,587,206 - 153,712,481 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4487,502,584 - 87,560,017 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1487,747,008 - 87,804,442 (+)NCBI
Celera482,507,731 - 82,564,802 (+)NCBICelera
Cytogenetic Map4q24NCBI
Abcg2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495547412,365,903 - 12,408,715 (+)NCBIChiLan1.0ChiLan1.0
ABCG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2386,093,103 - 86,236,613 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1486,353,103 - 86,499,020 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0480,379,108 - 80,446,641 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1491,101,321 - 91,170,418 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl491,101,321 - 91,170,157 (-)Ensemblpanpan1.1panPan2
ABCG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13211,443,778 - 11,517,674 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3211,443,780 - 11,517,674 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3230,372,283 - 30,510,869 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03211,496,580 - 11,635,323 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3211,496,586 - 11,573,345 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13211,580,165 - 11,719,079 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03211,406,011 - 11,544,317 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03228,508,945 - 28,549,001 (+)NCBIUU_Cfam_GSD_1.0
UU_Cfam_GSD_1.03228,373,259 - 28,501,671 (+)NCBIUU_Cfam_GSD_1.0
ABCG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1736,458,110 - 36,599,753 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603715,206,025 - 15,348,744 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in ABCG2A
2709 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 3 3 5 2 23 2 3 1
Below cutoff 1 2

Sequence


RefSeq Acc Id: ENSSSCT00000036315   ⟹   ENSSSCP00000028287
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8130,905,179 - 130,945,333 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000036626   ⟹   ENSSSCP00000028560
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8130,889,684 - 130,945,393 (+)Ensembl
RefSeq Acc Id: NM_214010   ⟹   NP_999175
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18130,853,414 - 130,945,388 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_999175 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAD12785 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000028287.4
  ENSSSCP00000028560.4
  ENSSSCP00070024187.1
GenBank Protein Q8MIB3 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_999175   ⟸   NM_214010
- UniProtKB: Q8MIB3 (UniProtKB/Swiss-Prot),   A0A5S6GWJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000028560   ⟸   ENSSSCT00000036626
RefSeq Acc Id: ENSSSCP00000028287   ⟸   ENSSSCT00000036315

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009215 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00070014755 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000036315.4 UniProtKB/TrEMBL
  ENSSSCT00000036626.4 UniProtKB/TrEMBL
  ENSSSCT00070029011.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_2_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABCG_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:397073 UniProtKB/Swiss-Prot
NCBI Gene ABCG2 ENTREZGENE
PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR48041:SF92 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ABC2_membrane UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC2_membrane_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_tran UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ABC_TRANSPORTER_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A5S6GWJ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A5S8LCP5_PIG UniProtKB/TrEMBL
  ABCG2_PIG UniProtKB/Swiss-Prot, ENTREZGENE
VGNC ID VGNC:111870 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-03 ABCG2A  ATP binding cassette subfamily G member 2A  ABCG2  ATP-binding cassette, sub-family G (WHITE), member 2  Symbol and/or name change 19259463 PROVISIONAL