Pik3cd (phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta) - Rat Genome Database

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Gene: Pik3cd (phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta) Rattus norvegicus
Analyze
Symbol: Pik3cd
Name: phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta
RGD ID: 1310990
Description: Predicted to enable 1-phosphatidylinositol-3-kinase activity and 1-phosphatidylinositol-4-phosphate 3-kinase activity. Involved in negative regulation of gene expression. Predicted to be located in cytosol. Predicted to be part of phosphatidylinositol 3-kinase complex, class IA. Predicted to be active in cytoplasm and plasma membrane. Used to study schizophrenia. Human ortholog(s) of this gene implicated in colorectal cancer; endometrial cancer; immunodeficiency 14; and schizophrenia. Orthologous to human PIK3CD (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; FasL mediated signaling pathway; phosphatidylinositol 3-kinase class I signaling pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: catalytic phosphatidylinositol 3-kinase delta; LOC366508; phosphatidylinositol 3-kinase catalytic delta polypeptide; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta isoform; phosphoinositide-3-kinase, catalytic, delta polypeptide
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85165,377,994 - 165,426,620 (-)NCBIGRCr8
mRatBN7.25160,094,952 - 160,142,962 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5160,094,952 - 160,120,930 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5162,811,574 - 162,837,548 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05164,630,975 - 164,656,844 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05164,587,341 - 164,613,203 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05166,602,053 - 166,628,028 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5166,602,053 - 166,628,028 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05170,248,202 - 170,274,177 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,735,274 - 166,761,189 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15166,747,134 - 166,774,251 (-)NCBI
Celera5158,364,393 - 158,390,431 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-butoxyethanol  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-nitrophenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carmustine  (ISO)
celastrol  (ISO)
chlormequat chloride  (EXP)
chloroprene  (ISO)
chlorpyrifos  (EXP,ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
diquat  (ISO)
Doramectin  (EXP)
elemental selenium  (ISO)
entinostat  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fonofos  (ISO)
gedunin  (ISO)
genistein  (EXP)
gentamycin  (EXP)
glycyrrhetinate  (ISO)
glycyrrhetinic acid  (ISO)
glycyrrhizinic acid  (ISO)
IC-87114  (ISO)
idelalisib  (ISO)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
LY294002  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
N-nitrosodimethylamine  (ISO)
nickel atom  (ISO)
obeticholic acid  (ISO)
ochratoxin A  (ISO)
ozone  (ISO)
parathion  (ISO)
pentachlorophenol  (ISO)
phenol  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
potassium chromate  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sirolimus  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tamibarotene  (ISO)
temozolomide  (ISO)
terbufos  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP)
tetracycline  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
toluene 2,4-diisocyanate  (ISO)
Tributyltin oxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tungsten  (ISO)
Tylophorine  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
wortmannin  (ISO)
Yessotoxin  (ISO)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
acute myeloid leukemia pathway   (IEA)
aldosterone signaling pathway  (IEA)
apoptotic cell death pathway  (IEA)
B cell receptor signaling pathway  (IEA)
ceramide signaling pathway  (IEA)
Chagas disease pathway  (IEA)
chemokine mediated signaling pathway  (IEA)
chronic myeloid leukemia pathway   (IEA)
colorectal cancer pathway   (IEA)
endometrial cancer pathway  (IEA)
Entamoebiasis pathway   (IEA)
epidermal growth factor/neuregulin signaling pathway   (IEA,ISO)
FasL mediated signaling pathway  (ISO)
Fc epsilon receptor mediated signaling pathway  (IEA)
Fc gamma receptor mediated signaling pathway  (IEA)
glioma pathway  (IEA)
hepatitis C pathway  (IEA)
influenza A pathway  (IEA)
inositol phosphate metabolic pathway   (IEA)
insulin signaling pathway   (IEA)
Jak-Stat signaling pathway  (IEA)
measles pathway  (IEA)
melanoma pathway   (IEA)
mTOR signaling pathway  (IEA)
neurotrophic factor signaling pathway   (IEA)
non-small cell lung carcinoma pathway   (IEA)
pancreatic cancer pathway  (IEA)
phosphatidylinositol 3-kinase class I signaling pathway  (ISO)
phosphatidylinositol 3-kinase signaling pathway   (IEA)
phosphatidylinositol 3-kinase-Akt signaling pathway  (ISO)
phosphoinositide metabolic pathway  (ISO)
platelet-derived growth factor signaling pathway   (ISO)
prostate cancer pathway   (IEA)
renal cell carcinoma pathway  (IEA)
small cell lung carcinoma pathway  (IEA)
T cell receptor signaling pathway   (IEA)
Toll-like receptor signaling pathway  (IEA)
toxoplasmosis pathway   (IEA)
Trail mediated signaling pathway   (ISO)
type 2 diabetes mellitus pathway   (IEA)
vascular endothelial growth factor signaling pathway  (IEA)

References

References - curated
# Reference Title Reference Citation
1. MiR-339 inhibits proliferation of pulmonary artery smooth muscle cell by targeting FGF signaling. Chen J, etal., Physiol Rep. 2017 Sep;5(18). pii: 5/18/e13441. doi: 10.14814/phy2.13441.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Phosphoinositide 3-kinases as a common platform for multi-hormone signaling. Hirsch E, etal., J Endocrinol. 2007 Aug;194(2):243-56.
5. Pharmacological inhibition of p110δ subunit of PI3K confers protection against experimental leishmaniasis. Khadem F, etal., J Antimicrob Chemother. 2017 Feb;72(2):467-477. doi: 10.1093/jac/dkw448. Epub 2016 Dec 20.
6. Neuregulin 1-ErbB4-PI3K signaling in schizophrenia and phosphoinositide 3-kinase-p110δ inhibition as a potential therapeutic strategy. Law AJ, etal., Proc Natl Acad Sci U S A. 2012 Jul 24;109(30):12165-70. doi: 10.1073/pnas.1206118109. Epub 2012 Jun 11.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Deficiency of Phosphatidylinositol 3-Kinase δ Signaling Leads to Diminished Numbers of Regulatory T Cells and Increased Neutrophil Activity Resulting in Mortality Due to Endotoxic Shock. Okeke EB, etal., J Immunol. 2017 Aug 1;199(3):1086-1095. doi: 10.4049/jimmunol.1600954. Epub 2017 Jun 28.
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. PI3Kδ Regulates the Magnitude of CD8+ T Cell Responses after Challenge with Listeria monocytogenes. Pearce VQ, etal., J Immunol. 2015 Oct 1;195(7):3206-17. doi: 10.4049/jimmunol.1501227. Epub 2015 Aug 26.
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
13. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
14. The p110δ isoforme of phosphatidylinositol 3-kinase plays an important role in host defense against chlamydial lung infection through influencing CD4+ T-cell function. Qiao S, etal., Pathog Dis. 2018 Aug 1;76(6). pii: 5035814. doi: 10.1093/femspd/fty053.
15. Role of PI3Kdelta and PI3Kgamma in inflammatory arthritis and tissue localization of neutrophils. Randis TM, etal., Eur J Immunol. 2008 May;38(5):1215-24.
16. GOA pipeline RGD automated data pipeline
17. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
18. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
19. Primate-specific miR-663 functions as a tumor suppressor by targeting PIK3CD and predicts the prognosis of human glioblastoma. Shi Y, etal., Clin Cancer Res. 2014 Apr 1;20(7):1803-13. doi: 10.1158/1078-0432.CCR-13-2284. Epub 2014 Feb 12.
20. PI3Kδ hyper-activation promotes development of B cells that exacerbate Streptococcus pneumoniae infection in an antibody-independent manner. Stark AK, etal., Nat Commun. 2018 Aug 9;9(1):3174. doi: 10.1038/s41467-018-05674-8.
21. Aberrant methylation of ERBB pathway genes in sporadic colorectal cancer. Szmida E, etal., J Appl Genet. 2015 May;56(2):185-92. doi: 10.1007/s13353-014-0253-6. Epub 2014 Nov 1.
22. PIK3R1 (p85a) is somatically mutated at high frequency in primary endometrial cancer. Urick ME, etal., Cancer Res. 2011 Jun 15;71(12):4061-7. doi: 10.1158/0008-5472.CAN-11-0549. Epub 2011 Apr 8.
Additional References at PubMed
PMID:12235209   PMID:12477932   PMID:22079609   PMID:22391142   PMID:24009720   PMID:25327288   PMID:25339672   PMID:35130772   PMID:37277581  


Genomics

Comparative Map Data
Pik3cd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85165,377,994 - 165,426,620 (-)NCBIGRCr8
mRatBN7.25160,094,952 - 160,142,962 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5160,094,952 - 160,120,930 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5162,811,574 - 162,837,548 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05164,630,975 - 164,656,844 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05164,587,341 - 164,613,203 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05166,602,053 - 166,628,028 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5166,602,053 - 166,628,028 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05170,248,202 - 170,274,177 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,735,274 - 166,761,189 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15166,747,134 - 166,774,251 (-)NCBI
Celera5158,364,393 - 158,390,431 (-)NCBICelera
Cytogenetic Map5q36NCBI
PIK3CD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819,627,258 - 9,729,114 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19,629,889 - 9,729,114 (+)EnsemblGRCh38hg38GRCh38
GRCh3719,711,789 - 9,789,172 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3619,634,377 - 9,711,759 (+)NCBINCBI36Build 36hg18NCBI36
Build 3419,646,068 - 9,723,240NCBI
Celera18,862,699 - 8,900,443 (+)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef18,867,937 - 8,945,277 (+)NCBIHuRef
CHM1_119,700,330 - 9,777,708 (+)NCBICHM1_1
T2T-CHM13v2.019,170,040 - 9,271,897 (+)NCBIT2T-CHM13v2.0
Pik3cd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,733,625 - 149,787,023 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4149,733,625 - 149,787,028 (-)EnsemblGRCm39 Ensembl
GRCm384149,649,168 - 149,702,566 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4149,649,168 - 149,702,571 (-)EnsemblGRCm38mm10GRCm38
MGSCv374149,023,277 - 149,075,738 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364148,492,968 - 148,542,489 (-)NCBIMGSCv36mm8
Celera4151,915,787 - 151,968,568 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map480.15NCBI
Pik3cd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554863,813,923 - 3,838,119 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554863,813,923 - 3,837,563 (-)NCBIChiLan1.0ChiLan1.0
PIK3CD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21218,491,653 - 218,569,742 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11217,137,299 - 217,214,394 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v018,418,570 - 8,495,435 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.119,683,626 - 9,724,641 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl19,686,208 - 9,724,633 (+)Ensemblpanpan1.1panPan2
PIK3CD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1562,884,596 - 62,936,882 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl562,909,009 - 62,935,971 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha562,900,181 - 62,953,014 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0563,111,143 - 63,163,978 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl563,093,394 - 63,164,766 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1563,132,926 - 63,185,725 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0562,972,335 - 63,025,149 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0563,376,064 - 63,428,899 (+)NCBIUU_Cfam_GSD_1.0
Pik3cd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505833,167,388 - 33,211,355 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366233,672,201 - 3,696,959 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIK3CD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl670,026,373 - 70,084,742 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1670,026,254 - 70,086,950 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2664,031,598 - 64,091,037 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PIK3CD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120122,040,131 - 122,111,397 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20122,041,963 - 122,078,504 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605426,005,112 - 26,077,450 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pik3cd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248182,751,724 - 2,779,999 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248182,751,724 - 2,789,145 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pik3cd
192 total Variants
miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir384rno-miR-384-5pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blotFunctional MTI23315007

Predicted Target Of
Summary Value
Count of predictions:387
Count of miRNA genes:230
Interacting mature miRNAs:270
Transcripts:ENSRNOT00000066179
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5151006154161165494Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat

Markers in Region
RH133425  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25160,095,082 - 160,095,287 (+)MAPPERmRatBN7.2
Rnor_6.05166,602,184 - 166,602,388NCBIRnor6.0
Rnor_5.05170,248,333 - 170,248,537UniSTSRnor5.0
RGSC_v3.45166,735,405 - 166,735,609UniSTSRGSC3.4
Celera5158,364,524 - 158,364,728UniSTS
RH 3.4 Map51115.8UniSTS
Cytogenetic Map5q36UniSTS
RH142729  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25160,112,028 - 160,112,136 (+)MAPPERmRatBN7.2
Rnor_6.05166,619,130 - 166,619,237NCBIRnor6.0
Rnor_5.05170,265,279 - 170,265,386UniSTSRnor5.0
RGSC_v3.45166,752,291 - 166,752,398UniSTSRGSC3.4
Celera5158,381,533 - 158,381,640UniSTS
RH 3.4 Map51115.5UniSTS
Cytogenetic Map5q36UniSTS
BE109926  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25160,097,539 - 160,097,715 (+)MAPPERmRatBN7.2
Rnor_6.05166,604,641 - 166,604,816NCBIRnor6.0
Rnor_5.05170,250,790 - 170,250,965UniSTSRnor5.0
RGSC_v3.45166,737,862 - 166,738,037UniSTSRGSC3.4
Celera5158,366,981 - 158,367,156UniSTS
RH 3.4 Map51114.6UniSTS
Cytogenetic Map5q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC099153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000066179   ⟹   ENSRNOP00000061674
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5160,094,952 - 160,120,930 (-)Ensembl
Rnor_6.0 Ensembl5166,602,053 - 166,628,028 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095643   ⟹   ENSRNOP00000076811
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5160,095,016 - 160,120,930 (-)Ensembl
RefSeq Acc Id: NM_001108978   ⟹   NP_001102448
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,377,994 - 165,403,968 (-)NCBI
mRatBN7.25160,094,952 - 160,120,930 (-)NCBI
Rnor_6.05166,602,053 - 166,628,028 (-)NCBI
Rnor_5.05170,248,202 - 170,274,177 (-)NCBI
RGSC_v3.45166,735,274 - 166,761,189 (-)RGD
Celera5158,364,393 - 158,390,431 (-)RGD
Sequence:
RefSeq Acc Id: XM_039110494   ⟹   XP_038966422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,426,620 (-)NCBI
mRatBN7.25160,095,015 - 160,142,961 (-)NCBI
RefSeq Acc Id: XM_039110495   ⟹   XP_038966423
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,426,620 (-)NCBI
mRatBN7.25160,095,015 - 160,142,962 (-)NCBI
RefSeq Acc Id: XM_039110496   ⟹   XP_038966424
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,425,942 (-)NCBI
mRatBN7.25160,095,015 - 160,126,805 (-)NCBI
RefSeq Acc Id: XM_039110497   ⟹   XP_038966425
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,406,179 (-)NCBI
mRatBN7.25160,095,015 - 160,123,156 (-)NCBI
RefSeq Acc Id: XM_039110498   ⟹   XP_038966426
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,425,870 (-)NCBI
mRatBN7.25160,095,015 - 160,142,835 (-)NCBI
RefSeq Acc Id: XM_039110499   ⟹   XP_038966427
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,426,620 (-)NCBI
mRatBN7.25160,095,015 - 160,142,961 (-)NCBI
RefSeq Acc Id: XM_039110500   ⟹   XP_038966428
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,426,620 (-)NCBI
mRatBN7.25160,095,015 - 160,142,961 (-)NCBI
RefSeq Acc Id: XM_039110501   ⟹   XP_038966429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,426,620 (-)NCBI
mRatBN7.25160,095,015 - 160,142,961 (-)NCBI
RefSeq Acc Id: XM_039110502   ⟹   XP_038966430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,426,620 (-)NCBI
mRatBN7.25160,095,015 - 160,142,961 (-)NCBI
RefSeq Acc Id: XM_039110503   ⟹   XP_038966431
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,426,620 (-)NCBI
mRatBN7.25160,095,015 - 160,142,961 (-)NCBI
RefSeq Acc Id: XM_039110504   ⟹   XP_038966432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,426,620 (-)NCBI
mRatBN7.25160,095,015 - 160,142,961 (-)NCBI
RefSeq Acc Id: XM_039110505   ⟹   XP_038966433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,426,620 (-)NCBI
mRatBN7.25160,095,015 - 160,142,961 (-)NCBI
RefSeq Acc Id: XM_063288133   ⟹   XP_063144203
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,426,620 (-)NCBI
RefSeq Acc Id: XM_063288134   ⟹   XP_063144204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,406,174 (-)NCBI
RefSeq Acc Id: XM_063288135   ⟹   XP_063144205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,405,561 (-)NCBI
RefSeq Acc Id: XM_063288136   ⟹   XP_063144206
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,425,933 (-)NCBI
RefSeq Acc Id: XM_063288137   ⟹   XP_063144207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,426,620 (-)NCBI
RefSeq Acc Id: XM_063288138   ⟹   XP_063144208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,425,990 (-)NCBI
RefSeq Acc Id: XM_063288139   ⟹   XP_063144209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,406,167 (-)NCBI
RefSeq Acc Id: XM_063288140   ⟹   XP_063144210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,425,917 (-)NCBI
RefSeq Acc Id: XM_063288141   ⟹   XP_063144211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,426,620 (-)NCBI
RefSeq Acc Id: XM_063288142   ⟹   XP_063144212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85165,378,057 - 165,406,177 (-)NCBI
RefSeq Acc Id: NP_001102448   ⟸   NM_001108978
- UniProtKB: D4A5Q1 (UniProtKB/TrEMBL),   A6IUB9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000061674   ⟸   ENSRNOT00000066179
RefSeq Acc Id: XP_038966423   ⟸   XM_039110495
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038966433   ⟸   XM_039110505
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038966432   ⟸   XM_039110504
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038966429   ⟸   XM_039110501
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038966428   ⟸   XM_039110500
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038966431   ⟸   XM_039110503
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038966430   ⟸   XM_039110502
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038966427   ⟸   XM_039110499
- Peptide Label: isoform X2
- UniProtKB: A0A8I5Y949 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966422   ⟸   XM_039110494
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038966426   ⟸   XM_039110498
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038966424   ⟸   XM_039110496
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038966425   ⟸   XM_039110497
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000076811   ⟸   ENSRNOT00000095643
RefSeq Acc Id: XP_063144211   ⟸   XM_063288141
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063144203   ⟸   XM_063288133
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063144207   ⟸   XM_063288137
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063144208   ⟸   XM_063288138
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063144206   ⟸   XM_063288136
- Peptide Label: isoform X2
- UniProtKB: A0A8I5Y949 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144210   ⟸   XM_063288140
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063144212   ⟸   XM_063288142
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063144204   ⟸   XM_063288134
- Peptide Label: isoform X2
- UniProtKB: A0A8I5Y949 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144209   ⟸   XM_063288139
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063144205   ⟸   XM_063288135
- Peptide Label: isoform X2
- UniProtKB: A0A8I5Y949 (UniProtKB/TrEMBL)
Protein Domains
C2 PI3K-type   PI3K-ABD   PI3K-RBD   PI3K/PI4K catalytic   PIK helical

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A5Q1-F1-model_v2 AlphaFold D4A5Q1 1-944 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310990 AgrOrtholog
BioCyc Gene G2FUF-39122 BioCyc
BioCyc Pathway PWY-6352 [3-phosphoinositide biosynthesis] BioCyc
BioCyc Pathway Image PWY-6352 BioCyc
Ensembl Genes ENSRNOG00000016846 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066179.3 UniProtKB/TrEMBL
  ENSRNOT00000095643.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1070.11 UniProtKB/TrEMBL
  1.25.40.70 UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/TrEMBL
  3.10.20.770 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  Kinase-like_dom UniProtKB/TrEMBL
  PI3/4_kinase_cat_dom UniProtKB/TrEMBL
  PI3/4_kinase_cat_sf UniProtKB/TrEMBL
  PI3/4_kinase_CS UniProtKB/TrEMBL
  PI3K_accessory_sf UniProtKB/TrEMBL
  PI3K_C2_dom UniProtKB/TrEMBL
  PI3K_p85-bd UniProtKB/TrEMBL
  PI3K_Ras-bd_dom UniProtKB/TrEMBL
  PI3Kdelta_dom UniProtKB/TrEMBL
  PI_Kinase UniProtKB/TrEMBL
  PInositide-3_kin_accessory_dom UniProtKB/TrEMBL
  Ubiquitin-rel_dom UniProtKB/TrEMBL
KEGG Report rno:366508 UniProtKB/TrEMBL
NCBI Gene 366508 ENTREZGENE
PANTHER PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE CATALYTIC SUBUNIT DELTA ISOFORM UniProtKB/TrEMBL
  PI_Kinase UniProtKB/TrEMBL
Pfam PI3_PI4_kinase UniProtKB/TrEMBL
  PI3K_C2 UniProtKB/TrEMBL
  PI3K_p85B UniProtKB/TrEMBL
  PI3K_rbd UniProtKB/TrEMBL
  PI3Ka UniProtKB/TrEMBL
PhenoGen Pik3cd PhenoGen
PROSITE PI3_4_KINASE_1 UniProtKB/TrEMBL
  PI3_4_KINASE_2 UniProtKB/TrEMBL
  PI3_4_KINASE_3 UniProtKB/TrEMBL
  PI3K_ABD UniProtKB/TrEMBL
  PI3K_C2 UniProtKB/TrEMBL
  PI3K_RBD UniProtKB/TrEMBL
  PIK_HELICAL UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016846 RatGTEx
SMART PI3K_C2 UniProtKB/TrEMBL
  PI3K_p85B UniProtKB/TrEMBL
  PI3K_rbd UniProtKB/TrEMBL
  PI3Ka UniProtKB/TrEMBL
  PI3Kc UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
  Kinase_like UniProtKB/TrEMBL
  SSF49562 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A8I5Y949 ENTREZGENE, UniProtKB/TrEMBL
  A6IUB9 ENTREZGENE, UniProtKB/TrEMBL
  D4A5Q1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-10 Pik3cd  phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta  Pik3cd  phosphoinositide-3-kinase, catalytic, delta polypeptide  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-23 Pik3cd  phosphoinositide-3-kinase, catalytic, delta polypeptide  Pik3cd  phosphatidylinositol 3-kinase catalytic delta polypeptide  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Pik3cd  phosphatidylinositol 3-kinase catalytic delta polypeptide   Pik3cd_predicted  phosphatidylinositol 3-kinase catalytic delta polypeptide (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Pik3cd_predicted  phosphatidylinositol 3-kinase catalytic delta polypeptide (predicted)      Symbol and Name status set to approved 70820 APPROVED