PATHWAY ONTOLOGY - ANNOTATIONS
The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml ).
Term: folate metabolic pathway
Accession: PW:0000140
browse the term
Definition: Folate metabolism represents the various aspects of the folate cycle and the folate-mediated transfer reactions essential for several biosynthetic pathways. The folate cycle and the folate-mediated one-carbon pathways are part of folate metabolism. Folate compounds are water-soluble forms of vitamin B9.
Synonyms: related_synonym: folic acid metabolic process; vitamin B9 metabolic pathway
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Akp3
alkaline phosphatase 3, intestine, not Mn requiring
IEA
KEGG
rno:00790
NCBI chr 9:87,804,680...87,808,715
Ensembl chr 9:87,804,749...87,807,913
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Aldh1l1
aldehyde dehydrogenase 1 family, member L1
TAS ISO
SMPDB RGD
PMID:14729668
SMP:00053, RGD:1547843
NCBI chr 4:123,059,989...123,106,471
Ensembl chr 4:123,060,008...123,106,465
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Alpi
alkaline phosphatase, intestinal
IEA
KEGG
rno:00790
NCBI chr 9:87,773,411...87,776,877
Ensembl chr 9:87,773,411...87,776,877
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Alpl
alkaline phosphatase, biomineralization associated
IEA
KEGG
rno:00790
NCBI chr 5:149,951,397...150,006,424
Ensembl chr 5:149,951,409...150,006,446
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Dhfr
dihydrofolate reductase
IDA ISO IEA
SMPDB KEGG RGD
PMID:11502523
SMP:00053 rno:00790, RGD:1298877
NCBI chr 2:23,585,876...23,611,199
Ensembl chr 2:23,586,031...23,613,713
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Dmgdh
dimethylglycine dehydrogenase
TAS
RGD
PMID:15358367
RGD:1547831
NCBI chr 2:24,912,600...24,987,533
Ensembl chr 2:24,912,578...24,987,528
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Folh1
folate hydrolase 1
ISO
RGD
PMID:9816319
RGD:151347637
NCBI chr 1:140,428,101...140,501,563
Ensembl chr 1:140,428,101...140,501,379
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Folr2
folate receptor beta
ISO
RGD
PMID:8445646
RGD:1540379
NCBI chr 1:156,200,044...156,218,380
Ensembl chr 1:156,200,060...156,205,724
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Fpgs
folylpolyglutamate synthase
IEA ISO
KEGG SMPDB
SMP:00053 rno:00790
NCBI chr 3:15,972,800...15,993,592
Ensembl chr 3:15,972,800...15,993,563
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Ftcd
formimidoyltransferase cyclodeaminase
ISO
SMPDB
SMP:00053
NCBI chr20:12,055,203...12,068,717
Ensembl chr20:12,055,208...12,068,735
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Gart
phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase
ISO
RGD
PMID:12450384
RGD:1547842
NCBI chr11:30,864,896...30,891,125
Ensembl chr11:30,865,889...30,891,125
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Gch1
GTP cyclohydrolase 1
IEA
KEGG
rno:00790
NCBI chr15:20,404,267...20,437,727
Ensembl chr15:20,402,527...20,437,698
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Ggh
gamma-glutamyl hydrolase
IEA ISO
KEGG SMPDB
SMP:00053 rno:00790
NCBI chr 5:33,529,880...33,552,790
Ensembl chr 5:33,529,880...33,552,787
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Gnmt
glycine N-methyltransferase
TAS
RGD
PMID:15347642
RGD:1359070
NCBI chr 9:14,254,675...14,258,028
Ensembl chr 9:14,254,675...14,258,434
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Mocs1
molybdenum cofactor synthesis 1
IEA
KEGG
rno:00790
NCBI chr 9:11,547,533...11,573,935
Ensembl chr 9:11,547,531...11,567,790
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Mocs2
molybdenum cofactor synthesis 2
IEA
KEGG
rno:00790
NCBI chr 2:46,504,588...46,516,327
Ensembl chr 2:46,504,588...46,516,324
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Mtfmt
mitochondrial methionyl-tRNA formyltransferase
ISO
SMPDB
SMP:00053
NCBI chr 8:65,953,787...65,971,841
Ensembl chr 8:65,953,767...65,971,841
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Mthfd1
methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1
TAS ISO
SMPDB RGD
PMID:2186031
SMP:00053, RGD:1299513
NCBI chr 6:94,977,862...95,045,375
Ensembl chr 6:94,977,862...95,045,372
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Mthfd1l
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
ISO
SMPDB
SMP:00053
NCBI chr 1:40,443,926...40,632,911
Ensembl chr 1:40,444,008...40,632,905
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Mthfd2
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase
ISO
SMPDB RGD
PMID:9454603
SMP:00053, RGD:1540378
NCBI chr 4:115,811,135...115,822,663
Ensembl chr 4:115,811,139...115,822,608
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Mthfr
methylenetetrahydrofolate reductase
ISO
SMPDB RGD
PMID:11933257
SMP:00053, RGD:1535021
NCBI chr 5:158,465,248...158,484,999
Ensembl chr 5:158,465,296...158,483,797
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Mthfs
methenyltetrahydrofolate synthetase
ISO
SMPDB
SMP:00053
NCBI chr 8:89,729,498...89,801,998
Ensembl chr 8:89,729,508...89,799,089
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Mtr
5-methyltetrahydrofolate-homocysteine methyltransferase
IDA
RGD
PMID:15845641
RGD:1359026
NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822
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Mtrr
5-methyltetrahydrofolate-homocysteine methyltransferase reductase
ISO
RGD
PMID:15979034
RGD:1359037
NCBI chr 1:34,866,991...34,899,425
Ensembl chr 1:34,867,089...34,899,425
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Pts
6-pyruvoyl-tetrahydropterin synthase
IEA
KEGG
rno:00790
NCBI chr 8:50,870,838...50,877,869
Ensembl chr 8:50,870,841...50,877,869
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Qdpr
quinoid dihydropteridine reductase
IEA
KEGG
rno:00790
NCBI chr14:65,670,251...65,683,853
Ensembl chr14:65,670,131...65,683,854
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Shmt1
serine hydroxymethyltransferase 1
TAS
RGD
PMID:15671219
RGD:1359815
NCBI chr10:45,468,698...45,490,833
Ensembl chr10:45,468,700...45,497,820
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Shmt2
serine hydroxymethyltransferase 2
TAS
RGD
PMID:15671219
RGD:1359815
NCBI chr 7:63,358,961...63,364,293
Ensembl chr 7:63,358,961...63,364,236
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Slc19a1
solute carrier family 19 member 1
TAS
RGD
PMID:11600421
RGD:735239
NCBI chr20:11,584,410...11,602,429
Ensembl chr20:11,584,411...11,601,972
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Slc46a1
solute carrier family 46 member 1
ISO
SMPDB
SMP:00053
NCBI chr10:63,361,504...63,367,940
Ensembl chr10:63,361,486...63,368,848
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Spr
sepiapterin reductase
IEA
KEGG
rno:00790
NCBI chr 4:117,671,948...117,676,292
Ensembl chr 4:117,671,949...117,675,678
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Tyms
thymidylate synthetase
IDA
RGD
PMID:9894005
RGD:1545055
NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536
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Aldh1l1
aldehyde dehydrogenase 1 family, member L1
ISO
RGD
PMID:22353665
RGD:7242562
NCBI chr 4:123,059,989...123,106,471
Ensembl chr 4:123,060,008...123,106,465
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Dhfr
dihydrofolate reductase
ISO
RGD
PMID:22108709
RGD:7242557
NCBI chr 2:23,585,876...23,611,199
Ensembl chr 2:23,586,031...23,613,713
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Folr1
folate receptor alpha
ISO
RGD
PMID:22108709
RGD:7242557
NCBI chr 1:156,219,460...156,238,436
Ensembl chr 1:156,219,460...156,230,667
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Mthfd1
methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1
ISO
RGD
PMID:22108709
RGD:7242557
NCBI chr 6:94,977,862...95,045,375
Ensembl chr 6:94,977,862...95,045,372
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Mthfr
methylenetetrahydrofolate reductase
ISO
RGD
PMID:22108709
RGD:7242557
NCBI chr 5:158,465,248...158,484,999
Ensembl chr 5:158,465,296...158,483,797
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Mtr
5-methyltetrahydrofolate-homocysteine methyltransferase
ISO
RGD
PMID:22108709 PMID:22108709
RGD:7242557 , RGD:7242557
NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822
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Mtrr
5-methyltetrahydrofolate-homocysteine methyltransferase reductase
ISO
RGD
PMID:22108709
RGD:7242557
NCBI chr 1:34,866,991...34,899,425
Ensembl chr 1:34,867,089...34,899,425
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Slc46a1
solute carrier family 46 member 1
ISO
RGD
PMID:22108709
RGD:7242557
NCBI chr10:63,361,504...63,367,940
Ensembl chr10:63,361,486...63,368,848
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Mthfd1
methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1
ISO
RGD
PMID:22353665
RGD:7242562
NCBI chr 6:94,977,862...95,045,375
Ensembl chr 6:94,977,862...95,045,372
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Mthfr
methylenetetrahydrofolate reductase
ISO
RGD
PMID:22353665
RGD:7242562
NCBI chr 5:158,465,248...158,484,999
Ensembl chr 5:158,465,296...158,483,797
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Mtr
5-methyltetrahydrofolate-homocysteine methyltransferase
ISO
RGD
PMID:22353665
RGD:7242562
NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822
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Aldh1l1
aldehyde dehydrogenase 1 family, member L1
ISO
RGD
PMID:22353665
RGD:7242562
NCBI chr 4:123,059,989...123,106,471
Ensembl chr 4:123,060,008...123,106,465
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Amt
aminomethyltransferase
ISO
RGD
PMID:20645850
RGD:7242560
NCBI chr 8:108,981,620...108,988,127
Ensembl chr 8:108,976,472...108,988,126
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Dhfr
dihydrofolate reductase
ISO
RGD
PMID:22108709
RGD:7242557
NCBI chr 2:23,585,876...23,611,199
Ensembl chr 2:23,586,031...23,613,713
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Dld
dihydrolipoamide dehydrogenase
ISO
RGD
PMID:20645850
RGD:7242560
NCBI chr 6:47,904,153...47,924,814
Ensembl chr 6:47,903,914...47,924,795
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Dmgdh
dimethylglycine dehydrogenase
ISO
RGD
PMID:20645850
RGD:7242560
NCBI chr 2:24,912,600...24,987,533
Ensembl chr 2:24,912,578...24,987,528
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Folh1
folate hydrolase 1
ISO
RGD
PMID:20814827 PMID:16859665
RGD:7242426 , RGD:7242559
NCBI chr 1:140,428,101...140,501,563
Ensembl chr 1:140,428,101...140,501,379
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Folr1
folate receptor alpha
ISO
RGD
PMID:22108709
RGD:7242557
NCBI chr 1:156,219,460...156,238,436
Ensembl chr 1:156,219,460...156,230,667
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Folr2
folate receptor beta
ISO
RGD
PMID:22108709
RGD:7242557
NCBI chr 1:156,200,044...156,218,380
Ensembl chr 1:156,200,060...156,205,724
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Fpgs
folylpolyglutamate synthase
ISO
RGD
PMID:16859665
RGD:7242559
NCBI chr 3:15,972,800...15,993,592
Ensembl chr 3:15,972,800...15,993,563
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Gcsh
glycine cleavage system protein H
ISO
RGD
PMID:20645850
RGD:7242560
NCBI chr19:45,036,013...45,046,770
Ensembl chr19:45,036,011...45,046,792
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Ggh
gamma-glutamyl hydrolase
TAS
RGD
PMID:16859665
RGD:7242559
NCBI chr 5:33,529,880...33,552,790
Ensembl chr 5:33,529,880...33,552,787
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Gldc
glycine decarboxylase
ISO
RGD
PMID:20645850
RGD:7242560
NCBI chr 1:227,883,249...227,962,119
Ensembl chr 1:227,883,249...227,962,097
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Mthfd1
methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1
ISO
RGD
PMID:22108709
RGD:7242557
NCBI chr 6:94,977,862...95,045,375
Ensembl chr 6:94,977,862...95,045,372
G
Mthfd1l
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
ISO
RGD
PMID:22108709
RGD:7242557
NCBI chr 1:40,443,926...40,632,911
Ensembl chr 1:40,444,008...40,632,905
G
Mthfd2
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase
ISO
RGD
PMID:20645850 PMID:22108709
RGD:7242560 , RGD:7242557
NCBI chr 4:115,811,135...115,822,663
Ensembl chr 4:115,811,139...115,822,608
G
Mthfd2l
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
ISO
RGD
PMID:22108709
RGD:7242557
NCBI chr14:17,089,947...17,170,036
Ensembl chr14:17,089,952...17,170,112
G
Mthfr
methylenetetrahydrofolate reductase
ISO
RGD
PMID:22108709
RGD:7242557
NCBI chr 5:158,465,248...158,484,999
Ensembl chr 5:158,465,296...158,483,797
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Mtr
5-methyltetrahydrofolate-homocysteine methyltransferase
ISO
RGD
PMID:22108709
RGD:7242557
NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822
G
Mtrr
5-methyltetrahydrofolate-homocysteine methyltransferase reductase
ISO
RGD
PMID:22108709
RGD:7242557
NCBI chr 1:34,866,991...34,899,425
Ensembl chr 1:34,867,089...34,899,425
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Sardh
sarcosine dehydrogenase
ISO
RGD
PMID:20645850
RGD:7242560
NCBI chr 3:10,510,553...10,575,342
Ensembl chr 3:10,510,553...10,573,874
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Shmt1
serine hydroxymethyltransferase 1
ISO
RGD
PMID:22108709
RGD:7242557
NCBI chr10:45,468,698...45,490,833
Ensembl chr10:45,468,700...45,497,820
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Shmt2
serine hydroxymethyltransferase 2
ISO
RGD
PMID:20645850 PMID:22108709
RGD:7242560 , RGD:7242557
NCBI chr 7:63,358,961...63,364,293
Ensembl chr 7:63,358,961...63,364,236
G
Slc19a1
solute carrier family 19 member 1
ISO
RGD
PMID:22108709 PMID:20814827
RGD:7242557 , RGD:7242426
NCBI chr20:11,584,410...11,602,429
Ensembl chr20:11,584,411...11,601,972
G
Slc25a32
solute carrier family 25 member 32
ISO
RGD
PMID:22332074
RGD:7242561
NCBI chr 7:70,142,958...70,160,726
Ensembl chr 7:70,142,964...70,160,770
G
Slc46a1
solute carrier family 46 member 1
ISO
RGD
PMID:22108709 PMID:20814827
RGD:7242557 , RGD:7242426
NCBI chr10:63,361,504...63,367,940
Ensembl chr10:63,361,486...63,368,848
G
Aldh1l1
aldehyde dehydrogenase 1 family, member L1
IEA TAS
KEGG RGD
PMID:14729668
rno:00670, RGD:1547843
NCBI chr 4:123,059,989...123,106,471
Ensembl chr 4:123,060,008...123,106,465
G
Aldh1l2
aldehyde dehydrogenase 1 family, member L2
IEA
KEGG
rno:00670
NCBI chr 7:20,254,246...20,305,793
Ensembl chr 7:20,254,233...20,305,776
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Amt
aminomethyltransferase
IEA
KEGG
rno:00670
NCBI chr 8:108,981,620...108,988,127
Ensembl chr 8:108,976,472...108,988,126
G
Atic
5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase
IEA ISO IDA
KEGG RGD
PMID:22332074 PMID:9332377
rno:00670, RGD:7242561 , RGD:70804
NCBI chr 9:73,164,846...73,184,897
Ensembl chr 9:73,164,846...73,184,889
G
Dhfr
dihydrofolate reductase
IDA ISO IEA
KEGG RGD
PMID:11502523 PMID:22332074
rno:00670, RGD:1298877 , RGD:7242561
NCBI chr 2:23,585,876...23,611,199
Ensembl chr 2:23,586,031...23,613,713
G
Dmgdh
dimethylglycine dehydrogenase
TAS
RGD
PMID:15358367
RGD:1547831
NCBI chr 2:24,912,600...24,987,533
Ensembl chr 2:24,912,578...24,987,528
G
Folh1
folate hydrolase 1
TAS
RGD
PMID:9501243
RGD:728645
NCBI chr 1:140,428,101...140,501,563
Ensembl chr 1:140,428,101...140,501,379
G
Ftcd
formimidoyltransferase cyclodeaminase
IEA
KEGG
rno:00670
NCBI chr20:12,055,203...12,068,717
Ensembl chr20:12,055,208...12,068,735
G
Gart
phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase
ISO IEA
KEGG RGD
PMID:12450384 PMID:22332074
rno:00670, RGD:1547842 , RGD:7242561
NCBI chr11:30,864,896...30,891,125
Ensembl chr11:30,865,889...30,891,125
G
Gnmt
glycine N-methyltransferase
TAS
RGD
PMID:8278367
RGD:1545057
NCBI chr 9:14,254,675...14,258,028
Ensembl chr 9:14,254,675...14,258,434
G
Mtfmt
mitochondrial methionyl-tRNA formyltransferase
IEA
KEGG
rno:00670
NCBI chr 8:65,953,787...65,971,841
Ensembl chr 8:65,953,767...65,971,841
G
Mthfd1
methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1
IEA ISO TAS
KEGG RGD
PMID:22332074 PMID:2186031
rno:00670, RGD:7242561 , RGD:1299513
NCBI chr 6:94,977,862...95,045,375
Ensembl chr 6:94,977,862...95,045,372
G
Mthfd1l
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
IEA
KEGG
rno:00670
NCBI chr 1:40,443,926...40,632,911
Ensembl chr 1:40,444,008...40,632,905
G
Mthfd2
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase
ISO IEA
KEGG RGD
PMID:9454603
rno:00670, RGD:1540378
NCBI chr 4:115,811,135...115,822,663
Ensembl chr 4:115,811,139...115,822,608
G
Mthfd2l
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
IEA
KEGG
rno:00670
NCBI chr14:17,089,947...17,170,036
Ensembl chr14:17,089,952...17,170,112
G
Mthfr
methylenetetrahydrofolate reductase
ISO IEA
KEGG RGD
PMID:11933257 PMID:22332074
rno:00670, RGD:1535021 , RGD:7242561
NCBI chr 5:158,465,248...158,484,999
Ensembl chr 5:158,465,296...158,483,797
G
Mthfs
methenyltetrahydrofolate synthetase
IEA
KEGG
rno:00670
NCBI chr 8:89,729,498...89,801,998
Ensembl chr 8:89,729,508...89,799,089
G
Mtr
5-methyltetrahydrofolate-homocysteine methyltransferase
IEA ISO IDA
KEGG RGD
PMID:20814827 PMID:15845641
rno:00670, RGD:7242426 , RGD:1359026
NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822
G
Mtrr
5-methyltetrahydrofolate-homocysteine methyltransferase reductase
ISO
RGD
PMID:20814827
RGD:7242426
NCBI chr 1:34,866,991...34,899,425
Ensembl chr 1:34,867,089...34,899,425
G
Shmt1
serine hydroxymethyltransferase 1
TAS ISO IEA IDA
KEGG RGD
PMID:15671219 PMID:22332074 PMID:3110140
rno:00670, RGD:1359815 , RGD:7242561 , RGD:2300383
NCBI chr10:45,468,698...45,490,833
Ensembl chr10:45,468,700...45,497,820
G
Shmt2
serine hydroxymethyltransferase 2
TAS ISO IEA IDA
KEGG RGD
PMID:15671219 PMID:22332074 PMID:3110140
rno:00670, RGD:1359815 , RGD:7242561 , RGD:2300383
NCBI chr 7:63,358,961...63,364,293
Ensembl chr 7:63,358,961...63,364,236
G
Tyms
thymidylate synthetase
IEA ISO IDA
KEGG RGD
PMID:22332074 PMID:9894005
rno:00670, RGD:7242561 , RGD:1545055
NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all