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Gene-Chemical Interaction Annotations
Gene-Chemical Interaction AnnotationsTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | 17alpha-ethynylestradiol | multiple interactions | ISO | RGD:732148 | 6480464 | [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of MTHFD1 mRNA | CTD | PMID:17942748 | 17alpha-ethynylestradiol | increases expression | ISO | RGD:732148 | 6480464 | Ethinyl Estradiol results in increased expression of MTHFD1 mRNA | CTD | PMID:17942748 | 17beta-estradiol | decreases expression | ISO | RGD:732147 | 6480464 | Estradiol results in decreased expression of MTHFD1 mRNA | CTD | PMID:16705744 | 17beta-estradiol | increases expression | ISO | RGD:732147 | 6480464 | Estradiol results in increased expression of MTHFD1 mRNA | CTD | PMID:19167446 | 2,3,7,8-tetrachlorodibenzodioxine | multiple interactions | ISO | RGD:732148 | 6480464 | [Tetrachlorodibenzodioxin co-treated with decitabine] results in increased expression of MTHFD1 mRNA | CTD | PMID:15251184 | 2,3,7,8-tetrachlorodibenzodioxine | decreases expression | EXP | | 6480464 | Tetrachlorodibenzodioxin results in decreased expression of MTHFD1 mRNA | CTD | PMID:20959002 PMID:21215274 | 2,3,7,8-tetrachlorodibenzodioxine | affects expression | ISO | RGD:732148 | 6480464 | Tetrachlorodibenzodioxin affects the expression of MTHFD1 mRNA | CTD | PMID:21570461 | 2,3,7,8-tetrachlorodibenzodioxine | decreases expression | EXP | | 6480464 | Tetrachlorodibenzodioxin results in decreased expression of MTHFD1 mRNA | CTD | PMID:21215274 | 2,3,7,8-tetrachlorodibenzodioxine | increases expression | ISO | RGD:732148 | 6480464 | Tetrachlorodibenzodioxin results in increased expression of MTHFD1 mRNA | CTD | PMID:17942748 | 2,3,7,8-tetrachlorodibenzodioxine | multiple interactions | ISO | RGD:732148 | 6480464 | [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of MTHFD1 mRNA | CTD | PMID:17942748 | 2-butoxyethanol | increases expression | ISO | RGD:732148 | 6480464 | n-butoxyethanol results in increased expression of MTHFD1 mRNA | CTD | PMID:19812364 | 5-aza-2'-deoxycytidine | increases expression | ISO | RGD:732148 | 6480464 | decitabine results in increased expression of MTHFD1 mRNA | CTD | PMID:15251184 | 5-aza-2'-deoxycytidine | multiple interactions | ISO | RGD:732148 | 6480464 | [Tetrachlorodibenzodioxin co-treated with decitabine] results in increased expression of MTHFD1 mRNA | CTD | PMID:15251184 | ammonium chloride | affects expression | EXP | | 6480464 | Ammonium Chloride affects the expression of MTHFD1 mRNA | CTD | PMID:16483693 | benzo[a]pyrene | multiple interactions | ISO | RGD:732148 | 6480464 | [Benzo(a)pyrene co-treated with XPA gene mutant form co-treated with TRP53 gene mutant form] results in decreased expression of MTHFD1 mRNA | CTD | PMID:21715664 | choline | affects response to substance | ISO | RGD:732147 | 6480464 | MTHFD1 gene SNP affects the susceptibility to Choline | CTD | PMID:17616785 | choline | multiple interactions | ISO | RGD:732148 | 6480464 | [Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased expression of MTHFD1 mRNA | CTD | PMID:20938992 | cobalt dichloride | decreases expression | ISO | RGD:732147 | 6480464 | cobaltous chloride results in decreased expression of MTHFD1 mRNA | CTD | PMID:19376846 PMID:19320972 | cobalt dichloride | decreases expression | ISO | RGD:732147 | 6480464 | cobaltous chloride results in decreased expression of MTHFD1 mRNA | CTD | PMID:19320972 PMID:19376846 | copper atom | multiple interactions | ISO | RGD:732147 | 6480464 | [NSC 689534 binds to Copper] which results in decreased expression of MTHFD1 mRNA | CTD | PMID:20971185 | copper(0) | multiple interactions | ISO | RGD:732147 | 6480464 | [NSC 689534 binds to Copper] which results in decreased expression of MTHFD1 mRNA | CTD | PMID:20971185 | copper(2+) sulfate | decreases expression | ISO | RGD:732147 | 6480464 | Copper Sulfate results in decreased expression of MTHFD1 mRNA | CTD | PMID:19549813 | coumestrol | increases expression | ISO | RGD:732147 | 6480464 | Coumestrol results in increased expression of MTHFD1 mRNA | CTD | PMID:19167446 | coumestrol | multiple interactions | ISO | RGD:732147 | 6480464 | [Coumestrol co-treated with resveratrol] results in increased expression of MTHFD1 mRNA; more ... | CTD | PMID:19167446 | cyclosporin A | decreases expression | ISO | RGD:732147 | 6480464 | Cyclosporine results in decreased expression of MTHFD1 mRNA | CTD | PMID:20106945 | diarsenic trioxide | decreases expression | ISO | RGD:732147 | 6480464 | arsenic trioxide results in decreased expression of MTHFD1 mRNA | CTD | PMID:20458559 | dibutyl phthalate | decreases expression | EXP | | 6480464 | Dibutyl Phthalate results in decreased expression of MTHFD1 mRNA | CTD | PMID:21266533 | dibutyl phthalate | decreases expression | ISO | RGD:732148 | 6480464 | Dibutyl Phthalate results in decreased expression of MTHFD1 mRNA | CTD | PMID:17361019 PMID:21266533 | dibutyl phthalate | decreases expression | ISO | RGD:732148 | 6480464 | Dibutyl Phthalate results in decreased expression of MTHFD1 mRNA | CTD | PMID:21266533 | dioxygen | decreases expression | ISO | RGD:732148 | 6480464 | Oxygen deficiency results in decreased expression of MTHFD1 mRNA | CTD | PMID:22629407 | dioxygen | multiple interactions | ISO | RGD:732148 | 6480464 | Oxygen inhibits the reaction [Oxygen deficiency results in decreased expression of MTHFD1 mRNA] | CTD | PMID:22629407 | folic acid | multiple interactions | ISO | RGD:732148 | 6480464 | [Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased expression of MTHFD1 mRNA | CTD | PMID:20938992 | genistein | decreases expression | ISO | RGD:732147 | 6480464 | Genistein results in decreased expression of MTHFD1 mRNA | CTD | PMID:16705744 | L-methionine | multiple interactions | ISO | RGD:732148 | 6480464 | [Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased expression of MTHFD1 mRNA | CTD | PMID:20938992 | lead(0) | decreases expression | ISO | RGD:732147 | 6480464 | Lead results in decreased expression of MTHFD1 mRNA | CTD | PMID:19921347 | menadione | affects expression | ISO | RGD:732147 | 6480464 | Vitamin K 3 affects the expression of MTHFD1 mRNA | CTD | PMID:20044591 | paracetamol | affects expression | ISO | RGD:732148 | 6480464 | Acetaminophen affects the expression of MTHFD1 mRNA | CTD | PMID:17562736 | paracetamol | increases expression | EXP | | 6480464 | Acetaminophen results in increased expression of MTHFD1 protein | CTD | PMID:16538041 | phenobarbital | increases expression | EXP | | 6480464 | Phenobarbital results in increased expression of MTHFD1 mRNA | CTD | PMID:19162173 | pirinixic acid | decreases expression | ISO | RGD:732148 | 6480464 | pirinixic acid results in decreased expression of MTHFD1 mRNA | CTD | PMID:17426115 PMID:18445702 | pirinixic acid | decreases expression | ISO | RGD:732148 | 6480464 | pirinixic acid results in decreased expression of MTHFD1 mRNA | CTD | PMID:18445702 PMID:17426115 | pregnenolone 16alpha-carbonitrile | increases expression | EXP | | 6480464 | Pregnenolone Carbonitrile results in increased expression of MTHFD1 mRNA | CTD | PMID:19162173 | resveratrol | multiple interactions | ISO | RGD:732147 | 6480464 | [Coumestrol co-treated with resveratrol] results in increased expression of MTHFD1 mRNA | CTD | PMID:19167446 | S-adenosyl-L-methionine | increases abundance | ISO | RGD:732148 | 6480464 | MTHFD1 protein results in increased abundance of S-Adenosylmethionine | CTD | PMID:19033438 | tetrachloromethane | affects expression | ISO | RGD:732148 | 6480464 | Carbon Tetrachloride affects the expression of MTHFD1 mRNA | CTD | PMID:17484886 | trans-resveratrol | multiple interactions | ISO | RGD:732147 | 6480464 | [Coumestrol co-treated with resveratrol] results in increased expression of MTHFD1 mRNA | CTD | PMID:19167446 | trimellitic anhydride | increases expression | ISO | RGD:732148 | 6480464 | trimellitic anhydride results in increased expression of MTHFD1 mRNA | CTD | PMID:19042947 | vancomycin | increases expression | ISO | RGD:732148 | 6480464 | Vancomycin results in increased expression of MTHFD1 mRNA | CTD | PMID:18930951 | zinc sulfate | decreases expression | ISO | RGD:732147 | 6480464 | Zinc Sulfate results in decreased expression of MTHFD1 mRNA | CTD | PMID:12756304 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations
Molecular Pathway Annotations| External Database Links | |
| KEGG Pathway | Metabolic pathways |
| One carbon pool by folate | |
Disease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Molecular Pathway Annotations
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| External Database Links | |
| KEGG Pathway | Metabolic pathways |
| One carbon pool by folate | |
References - curated| 1. |
De Marco P, etal., J Hum Genet. 2006;51(2):98-103. Epub 2005 Nov 29. |
| 2. |
GOA data from the GO Consortium |
| 3. |
Hol FA, etal., Clin Genet. 1998 Feb;53(2):119-25. |
| 4. |
Howard KM, etal., Gene 2003 Nov 13;319:85-97. |
| 5. |
KEGG |
| 6. |
MGD data from the GO Consortium |
| 7. |
Pipeline to import KEGG annotations from KEGG into RGD Pathway Ontology |
| 8. |
RGD automated data pipeline |
| 9. |
RGD automated import pipeline for gene-chemical interactions |
| 10. |
RGD Automated Pipelines |
| 11. |
Stover PJ and Field MS, Adv Nutr. 2011 Jul;2(4):325-31. doi: 10.3945/¿an.111.000596. Epub 2011 Jun 28. |
| 12. |
Stover PJ J Nutrigenet Nutrigenomics. 2011;4(5):293-305. doi: 10.1159/000334586. Epub 2012 Feb 22. |
| 13. |
Thigpen AE, etal., J Biol Chem 1990 May 15;265(14):7907-13. |
| 14. |
Watkins D and Rosenblatt DS, J Inherit Metab Dis. 2012 Jul;35(4):665-70. doi: 10.1007/s10545-011-9418-1. Epub 2011 Nov 23. |
References - uncurated
RGD Disease Portals| Mthfd1 has been annotated in the following RGD Disease Portals. |
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Comparative Map Data| Mthfd1 (Rattus norvegicus) |
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| MTHFD1 (Homo sapiens) |
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| Mthfd1 (Mus musculus) |
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QTLs in Region (RGSC Genome Assembly v3.4)| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
Nucleotide Sequences| Nucleotide RefSeqs | NM_022508 | (Get FASTA) | Search GEO for Microarray Profiles |
| GenBank Nucleotide | AABR06044950 | (Get FASTA) | Search GEO for Microarray Profiles |
| AAHX01045202 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AAHX01045203 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC089800 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CH473947 | (Get FASTA) | Search GEO for Microarray Profiles | |
| HB883475 | (Get FASTA) | Search GEO for Microarray Profiles | |
| HB895200 | (Get FASTA) | Search GEO for Microarray Profiles | |
| HC940884 | (Get FASTA) | Search GEO for Microarray Profiles | |
| HC952609 | (Get FASTA) | Search GEO for Microarray Profiles | |
| J05519 | (Get FASTA) | Search GEO for Microarray Profiles | |
| U31032 | (Get FASTA) | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | NM_022508 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Protein Acc Id: | NP_071953 | ||||||||||||||||||||
| Position: |
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Protein Sequences| Protein RefSeqs | NP_071953 | (Get FASTA) |
| GenBank Protein | AAA74248 | (Get FASTA) |
| AAA74744 | (Get FASTA) | |
| AAH89800 | (Get FASTA) | |
| CBF65957 | (Get FASTA) | |
| CBF74022 | (Get FASTA) | |
| CBU90829 | (Get FASTA) | |
| CBU96465 | (Get FASTA) | |
| EDM03655 | (Get FASTA) | |
| EDM03656 | (Get FASTA) | |
| P27653 | (Get FASTA) |
Strain Sequence Variants
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External Database Links| Database | Acc Id | Source(s) |
| Ensembl Genes | ENSRNOG00000005602 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000008374 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000008374 | ENTREZGENE, UniProtKB/TrEMBL |
| Entrez Gene | 64300 | ENTREZGENE |
| Gene3D-CATH | NAD(P)-bd | UniProtKB/Swiss-Prot |
| Germonline | ENSRNOG00000005602 | UniProtKB/Swiss-Prot |
| HomoloGene Group ID | 55940 | ENTREZGENE |
| IMAGE_CLONE | IMAGE:7323085 | IMAGE-MGC_LOAD |
| InterPro | Formate_THF_ligase | UniProtKB/Swiss-Prot |
| Formate_THF_ligase_CS | UniProtKB/Swiss-Prot | |
| NAD(P)-bd_dom | UniProtKB/Swiss-Prot | |
| P-loop_NTPase | UniProtKB/Swiss-Prot | |
| THF_DH/CycHdrlase | UniProtKB/Swiss-Prot | |
| THF_DH/CycHdrlase_cat_dom | UniProtKB/Swiss-Prot | |
| THF_DH/CycHdrlase_CS | UniProtKB/Swiss-Prot | |
| THF_DH/CycHdrlase_NAD-bd_dom | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:64300 | ENTREZGENE, UniProtKB/Swiss-Prot |
| MGC_CLONE | MGC:108690 | IMAGE-MGC_LOAD |
| Pfam | FTHFS | UniProtKB/Swiss-Prot |
| THF_DHG_CYH | UniProtKB/Swiss-Prot | |
| THF_DHG_CYH_C | UniProtKB/Swiss-Prot | |
| PharmGKB | MTHFD1 | RGD |
| PRINTS | THFDHDRGNASE | UniProtKB/Swiss-Prot |
| PROSITE | FTHFS_1 | UniProtKB/Swiss-Prot |
| FTHFS_2 | UniProtKB/Swiss-Prot | |
| THF_DHG_CYH_1 | UniProtKB/Swiss-Prot | |
| THF_DHG_CYH_2 | UniProtKB/Swiss-Prot | |
| Superfamily-SCOP | SSF52540 | UniProtKB/Swiss-Prot |
| UniGene | Rn.1114 | ENTREZGENE |
| UniProt | C1TC_RAT | UniProtKB/Swiss-Prot |
| G3V6S5_RAT | UniProtKB/TrEMBL | |
| Q5EBC3_RAT | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2008-08-29 | Mthfd1 | methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase | Mthfd1 | methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase | Nomenclature updated to reflect human and mouse nomenclature | 10779 | APPROVED |
| 2004-12-14 | Mthfd1 | methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase | LOC64300 | C1-tetrahydrofolate synthase | Symbol and Name updated | 10779 | APPROVED |
RGD Curation Notes| Note Type | Note | Reference |
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| More on Mthfd1 | |
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Entrez Gene |
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Ensembl Gene |
![]() | Genome Browser |
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NCBI Map Viewer |
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Vista |
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Vista + UCSC |
| RGD Object Information | |
| RGD ID: | 708531 |
| Created: | 2003-09-23 |
| Species: | Rattus norvegicus |
| Last Modified: | 2013-05-28 |
| Status: | ACTIVE |
© Bioinformatics Program, HMGC at the Medical College of Wisconsin
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.




