ONTOLOGY REPORT - ANNOTATIONS
Term: detection of external biotic stimulus
Accession: GO:0098581
browse the term
Definition: The series of events in which an external biotic stimulus is detected and converted into a molecular signal. An external biotic stimulus is defined as one caused or produced by a living organism other than the one being stimulated.
Synonyms: exact_synonym: detection of exogenous biotic stimulus
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Ssc5d
scavenger receptor cysteine rich family member with 5 domains
involved_in
ISO IBA
(MGI:4939978|PMID:21217009) GO_REF:0000033
RGD GO_Central
PMID:21217009
GO_REF:0000033 MGI:4939978
NCBI chr 1:68,891,942...68,910,462
Ensembl chr 1:68,891,949...68,909,743
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Clec4m
C-type lectin domain family 4 member M
acts_upstream_of_or_within
ISO
(PMID:14707091)
RGD
PMID:14707091
NCBI chr12:1,915,902...1,924,529
Ensembl chr12:1,915,919...1,924,539
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Naip6
NLR family, apoptosis inhibitory protein 6
involved_in
ISO IBA
(MGI:5289703|PMID:21874021) GO_REF:0000033
RGD GO_Central
PMID:21874021
GO_REF:0000033 MGI:5289703
NCBI chr 2:31,507,423...31,559,098
Ensembl chr 2:31,507,424...31,570,542
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Nlrc4
NLR family, CARD domain containing 4
involved_in
ISO IBA ISS
(PMID:15107016) GO_REF:0000033 GO_REF:0000024 (MGI:5444805|PMID:22885697)
RGD GO_Central UniProt
PMID:15107016 PMID:22885697
GO_REF:0000024 GO_REF:0000033 MGI:5444805
NCBI chr 6:20,991,785...21,018,254
Ensembl chr 6:20,995,266...21,018,248
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Nod1
nucleotide-binding oligomerization domain containing 1
involved_in
ISO
(PMID:15653568)
RGD
PMID:15653568
NCBI chr 4:84,060,871...84,111,668
Ensembl chr 4:84,060,880...84,111,404
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Nod2
nucleotide-binding oligomerization domain containing 2
involved_in
ISO
(PMID:15653568)
RGD
PMID:15653568
NCBI chr19:18,382,369...18,422,817
Ensembl chr19:18,382,439...18,417,177
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Parg
poly (ADP-ribose) glycohydrolase
acts_upstream_of_or_within
ISO
MGI:3052740 (PMID:15282315)
RGD
PMID:15282315
NCBI chr16:7,436,429...7,544,276
Ensembl chr16:7,436,476...7,544,273
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Pglyrp1
peptidoglycan recognition protein 1
involved_in
ISO IBA
(PMID:11461926) GO_REF:0000033
RGD GO_Central
PMID:11461926
GO_REF:0000033
NCBI chr 1:78,531,815...78,537,001
Ensembl chr 1:78,531,815...78,537,001
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Pglyrp2
peptidoglycan recognition protein 2
involved_in
ISO
(PMID:11461926)
RGD
PMID:11461926
NCBI chr 7:11,418,674...11,432,162
Ensembl chr 7:11,418,880...11,427,773
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Pglyrp3
peptidoglycan recognition protein 3
involved_in
ISO
(PMID:11461926)
RGD
PMID:11461926
NCBI chr 2:177,479,693...177,490,769
Ensembl chr 2:177,477,407...177,490,736 Ensembl chr 2:177,477,407...177,490,736
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Pglyrp4
peptidoglycan recognition protein 4
involved_in
ISO
(PMID:11461926)
RGD
PMID:11461926
NCBI chr 2:176,202,654...176,322,859
Ensembl chr 2:176,218,519...176,242,251
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Tlr2
toll-like receptor 2
acts_upstream_of_or_within
ISO
(PMID:19931471)
RGD
PMID:19931471
NCBI chr 2:169,200,620...169,206,819
Ensembl chr 2:169,197,419...169,206,630
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Tlr6
toll-like receptor 6
acts_upstream_of_or_within
ISO
(PMID:19931471)
RGD
PMID:19931471
NCBI chr14:43,362,164...43,374,500
Ensembl chr14:43,362,164...43,375,685
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Casp4
caspase 4
involved_in
ISO
(MGI:5510905|PMID:23887873), (MGI:5511082|PMID:24031018), (MGI:7432483|PMID:30589883)
RGD
PMID:23887873 PMID:24031018 PMID:30589883
MGI:5510905 MGI:5511082 MGI:7432483
NCBI chr 8:2,599,017...2,635,097
Ensembl chr 8:2,598,876...2,635,092
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Ly96
lymphocyte antigen 96
involved_in
ISO
(PMID:19252480)
RGD
PMID:19252480
NCBI chr 5:2,582,233...2,612,357
Ensembl chr 5:2,582,254...2,612,386
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Nr4a1
nuclear receptor subfamily 4, group A, member 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:7463870|PMID:37001519)
UniProt RGD
PMID:37001519
GO_REF:0000024 MGI:7463870
NCBI chr 7:132,368,399...132,389,300
Ensembl chr 7:132,374,840...132,389,297
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Scarb1
scavenger receptor class B, member 1
involved_in
ISO IEA
(PMID:12651854) GO_REF:0000107
RGD Ensembl
PMID:12651854
GO_REF:0000107
NCBI chr12:31,296,143...31,362,649
Ensembl chr12:31,296,156...31,362,647
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Tlr4
toll-like receptor 4
involved_in
ISO IEA ISS IBA
(PMID:19252480) GO_REF:0000107 (MGI:5913054|PMID:28098138) GO_REF:0000024 GO_REF:0000033
RGD Ensembl UniProt GO_Central
PMID:19252480 PMID:28098138
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:5913054
NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
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Trem2
triggering receptor expressed on myeloid cells 2
involved_in
ISO
(MGI:5572888|PMID:12847223)
RGD
PMID:12847223
MGI:5572888
NCBI chr 9:12,647,605...12,654,190
Ensembl chr 9:12,647,259...12,654,170
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Trem2
triggering receptor expressed on myeloid cells 2
involved_in
ISO
(MGI:5572888|PMID:12847223)
RGD
PMID:12847223
MGI:5572888
NCBI chr 9:12,647,605...12,654,190
Ensembl chr 9:12,647,259...12,654,170
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Lbp
lipopolysaccharide binding protein
involved_in
ISO IEA
(PMID:11528597) GO_REF:0000107
RGD Ensembl
PMID:11528597
GO_REF:0000107
NCBI chr 3:146,953,889...146,981,032
Ensembl chr 3:146,954,015...146,981,586
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Tlr9
toll-like receptor 9
involved_in
ISO
(PMID:17128265)
RGD
PMID:17128265
NCBI chr 8:106,864,680...106,868,796
Ensembl chr 8:106,864,680...106,868,796
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Clec7a
C-type lectin domain containing 7A
involved_in
ISO
(MGI:3045647|PMID:15213161)
RGD
PMID:15213161
MGI:3045647
NCBI chr 4:162,902,731...162,913,931
Ensembl chr 4:162,902,732...162,913,897
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Nod2
nucleotide-binding oligomerization domain containing 2
involved_in acts_upstream_of_or_within
ISO
(PMID:15998797) (PMID:12527755)
RGD
PMID:12527755 PMID:15998797
NCBI chr19:18,382,369...18,422,817
Ensembl chr19:18,382,439...18,417,177
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Trem2
triggering receptor expressed on myeloid cells 2
involved_in
ISO
(MGI:5572888|PMID:12847223)
RGD
PMID:12847223
MGI:5572888
NCBI chr 9:12,647,605...12,654,190
Ensembl chr 9:12,647,259...12,654,170
G
Tlr1
toll-like receptor 1
acts_upstream_of_or_within
ISO
(PMID:19931471)
RGD
PMID:19931471
NCBI chr14:43,384,127...43,396,765
Ensembl chr14:43,384,932...43,397,125
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Tlr2
toll-like receptor 2
acts_upstream_of_or_within
ISO
(PMID:19931471)
RGD
PMID:19931471
NCBI chr 2:169,200,620...169,206,819
Ensembl chr 2:169,197,419...169,206,630
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Clec4a
C-type lectin domain family 4, member A
involved_in
ISO
(MGI:5300086|PMID:22041900)
RGD
PMID:22041900
MGI:5300086
NCBI chr 4:156,340,439...156,434,212
Ensembl chr 4:156,414,688...156,432,402
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Clec4m
C-type lectin domain family 4 member M
acts_upstream_of_or_within
ISO
(PMID:14707091)
RGD
PMID:14707091
NCBI chr12:1,915,902...1,924,529
Ensembl chr12:1,915,919...1,924,539
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Clec6a-ps1
C-type lectin domain family 6, member A, pseudogene 1
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr 4:156,539,408...156,559,032
Ensembl chr 4:156,539,408...156,558,605 Ensembl chr 4:156,539,408...156,558,605
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Clec7a
C-type lectin domain containing 7A
involved_in acts_upstream_of_or_within
ISO
(MGI:3844414|PMID:19136564) (PMID:14698225)
RGD
PMID:14698225 PMID:19136564
MGI:3844414
NCBI chr 4:162,902,731...162,913,931
Ensembl chr 4:162,902,732...162,913,897
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