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ONTOLOGY REPORT - ANNOTATIONS

Term:proteasomal protein catabolic process
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Accession:GO:0010498 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
Synonyms:exact_synonym: proteasome-mediated protein catabolic process;   proteasome-mediated protein catabolism

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proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ate1 arginyltransferase 1 acts_upstream_of_or_within ISO (PMID:25970626) MGI PMID:25970626 NCBI chrNW_004624737:24,744,557...24,910,310
Ensembl chrNW_004624737:24,744,574...24,907,680 		JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISO (PMID:26565908) UniProt PMID:26565908 NCBI chrNW_004624754:24,559,483...24,571,073
Ensembl chrNW_004624754:24,559,801...24,571,073 		JBrowse link
G Brinp1 BMP/retinoic acid inducible neural specific 1 acts_upstream_of_or_within ISO (PMID:25732823) MGI PMID:25732823 NCBI chrNW_004624760:15,902,890...16,071,513
Ensembl chrNW_004624760:15,902,858...16,075,104 		JBrowse link
G Cul4b cullin 4B acts_upstream_of_or_within ISO (PMID:25970626) MGI PMID:25970626 NCBI chrNW_004624931:431,835...568,609 JBrowse link
G Ddb1 damage specific DNA binding protein 1 acts_upstream_of_or_within ISO (PMID:25970626) MGI PMID:25970626 NCBI chrNW_004624926:871,003...893,902
Ensembl chrNW_004624926:871,000...897,777 		JBrowse link
G Ddi1 DNA damage inducible 1 homolog 1 involved_in ISO (PMID:29290612) UniProt PMID:29290612 NCBI chrNW_004624918:1,177,679...1,179,208
Ensembl chrNW_004624918:1,177,614...1,179,393 		JBrowse link
G Derl1 derlin 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624735:31,832,711...31,857,687
Ensembl chrNW_004624735:31,832,701...31,857,687 		JBrowse link
G Derl2 derlin 2 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624786:9,274,302...9,285,645
Ensembl chrNW_004624786:9,274,302...9,285,288 		JBrowse link
G Derl3 derlin 3 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624747:10,357,560...10,359,779
Ensembl chrNW_004624747:10,357,627...10,359,779 		JBrowse link
G Dtx4 deltex E3 ubiquitin ligase 4 involved_in ISO (PMID:35793002) UniProt PMID:35793002 NCBI chrNW_004624864:1,475,383...1,502,047
Ensembl chrNW_004624864:1,478,059...1,498,066 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO (PMID:35733270) MGI PMID:35733270 NCBI chrNW_004624730:38,003,437...38,144,312
Ensembl chrNW_004624730:38,003,902...38,144,277 		JBrowse link
G LOC101701770 protein SCO1 homolog, mitochondrial acts_upstream_of ISO (PMID:25683716) MGI PMID:25683716 NCBI chrNW_004624786:13,038,384...13,053,250
Ensembl chrNW_004624786:13,036,426...13,053,210 		JBrowse link
G Marchf6 membrane associated ring-CH-type finger 6 involved_in ISO (PMID:15673284) ParkinsonsUK-UCL PMID:15673284 NCBI chrNW_004624751:7,715,065...7,781,320
Ensembl chrNW_004624751:7,715,007...7,780,460 		JBrowse link
G Nr1d1 nuclear receptor subfamily 1 group D member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624795:3,102,424...3,109,497
Ensembl chrNW_004624795:3,102,439...3,109,497 		JBrowse link
G Nub1 negative regulator of ubiquitin like proteins 1 acts_upstream_of_or_within ISO (PMID:26797281) MGI PMID:26797281 NCBI chrNW_004624800:5,314,203...5,345,301
Ensembl chrNW_004624800:5,315,381...5,345,801 		JBrowse link
G Pmaip1 phorbol-12-myristate-13-acetate-induced protein 1 involved_in ISO (PMID:15901672) UniProt PMID:15901672 NCBI chrNW_004624792:5,330,289...5,338,067 JBrowse link
G Pmp22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (PMID:14627652) MGI PMID:14627652 NCBI chrNW_004624877:3,293,980...3,328,337
Ensembl chrNW_004624877:3,292,244...3,328,660 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:19725078) BHF-UCL PMID:19725078 NCBI chrNW_004624855:430,148...1,992,121
Ensembl chrNW_004624855:430,260...1,989,747 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in ISO (MGI:5586800|PMID:17349974)
(PMID:17349974)		 UniProt PMID:17349974 MGI:5586800 NCBI chrNW_004624926:268,965...274,634
Ensembl chrNW_004624926:266,159...274,529 		JBrowse link
G Psma1 proteasome 20S subunit alpha 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624766:6,380,057...6,392,408
Ensembl chrNW_004624766:6,380,060...6,392,373 		JBrowse link
G Psma2 proteasome 20S subunit alpha 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624740:18,231,152...18,241,403
Ensembl chrNW_004624740:18,230,800...18,241,399 		JBrowse link
G Psma4 proteasome 20S subunit alpha 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624894:2,411,696...2,419,622 JBrowse link
G Psma5 proteasome 20S subunit alpha 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624772:5,127,271...5,148,928
Ensembl chrNW_004624772:5,122,928...5,148,911 		JBrowse link
G Psma6 proteasome 20S subunit alpha 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624838:1,449,362...1,474,597
Ensembl chrNW_004624838:1,449,266...1,486,382 		JBrowse link
G Psma7 proteasome 20S subunit alpha 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:28,011,606...28,017,059
Ensembl chrNW_004624741:28,011,606...28,017,130 		JBrowse link
G Psma8 proteasome 20S subunit alpha 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624770:6,183,774...6,235,885
Ensembl chrNW_004624770:6,185,767...6,236,505 		JBrowse link
G Psmb2 proteasome 20S subunit beta 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624764:18,653,691...18,688,037
Ensembl chrNW_004624764:18,650,839...18,688,035 		JBrowse link
G Rnf41 ring finger protein 41 involved_in ISO (PMID:18541373) ParkinsonsUK-UCL PMID:18541373 NCBI chrNW_004624802:11,781,748...11,811,412
Ensembl chrNW_004624802:11,781,725...11,810,402 		JBrowse link
G Socs6 suppressor of cytokine signaling 6 acts_upstream_of_or_within ISO (PMID:20007709) MGI PMID:20007709 NCBI chrNW_004624806:10,921,204...10,949,108 JBrowse link
G Trim21 tripartite motif containing 21 involved_in ISO (PMID:36359729) UniProt PMID:36359729 NCBI chrNW_004624817:5,643,788...5,651,514
Ensembl chrNW_004624817:5,639,779...5,653,361 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624915:253,240...270,440
Ensembl chrNW_004624915:253,240...270,501 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (PMID:17981124) MGI PMID:17981124 NCBI chrNW_004624731:5,350,912...5,359,286 JBrowse link
anaphase-promoting complex-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anapc1 anaphase promoting complex subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624749:458,670...570,799
Ensembl chrNW_004624749:460,699...569,545 		JBrowse link
G Anapc10 anaphase promoting complex subunit 10 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624853:3,992,351...4,059,254
Ensembl chrNW_004624853:3,992,414...4,059,215 		JBrowse link
G Anapc11 anaphase promoting complex subunit 11 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624801:10,738,356...10,742,334
Ensembl chrNW_004624801:10,738,224...10,742,220 		JBrowse link
G Anapc13 anaphase promoting complex subunit 13 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624730:10,805,200...10,811,341
Ensembl chrNW_004624730:10,805,250...10,810,853 		JBrowse link
G Anapc15 anaphase promoting complex subunit 15 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624817:4,863,426...4,866,452
Ensembl chrNW_004624817:4,864,670...4,866,452 		JBrowse link
G Anapc16 anaphase promoting complex subunit 16 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624754:6,009,255...6,031,023
Ensembl chrNW_004624754:6,009,151...6,023,908 		JBrowse link
G Anapc2 anaphase promoting complex subunit 2 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624760:760,815...772,116
Ensembl chrNW_004624760:760,749...772,855 		JBrowse link
G Anapc4 anaphase promoting complex subunit 4 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624755:7,013,769...7,047,292
Ensembl chrNW_004624755:7,013,763...7,047,424 		JBrowse link
G Anapc5 anaphase promoting complex subunit 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:21,847,948...21,881,501
Ensembl chrNW_004624747:21,844,453...21,881,847 		JBrowse link
G Anapc7 anaphase promoting complex subunit 7 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624747:21,473,337...21,501,348
Ensembl chrNW_004624747:21,473,352...21,499,843 		JBrowse link
G Cdc16 cell division cycle 16 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624793:151,508...186,342 JBrowse link
G Cdc20 cell division cycle 20 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624892:2,675,980...2,679,709
Ensembl chrNW_004624892:2,675,754...2,679,793 		JBrowse link
G Cdc20b cell division cycle 20B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624759:4,112,012...4,174,838
Ensembl chrNW_004624759:4,109,203...4,176,824 		JBrowse link
G Cdc23 cell division cycle 23 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624743:31,012,262...31,036,639
Ensembl chrNW_004624743:31,012,720...31,036,762 		JBrowse link
G Cdc26 cell division cycle 26 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624760:21,820,513...21,830,808
Ensembl chrNW_004624760:21,820,531...21,830,784 		JBrowse link
G Cdc27 cell division cycle 27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624849:2,026,433...2,105,626
Ensembl chrNW_004624849:2,026,425...2,092,857 		JBrowse link
G Cul3 cullin 3 acts_upstream_of_or_within ISO (PMID:10500095) MGI PMID:10500095 NCBI chrNW_004624823:767,347...854,065
Ensembl chrNW_004624823:766,780...852,727 		JBrowse link
G Ecrg4 ECRG4 augurin precursor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20404145) Ensembl
MGI
TreeGrafter		 PMID:20404145 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624749:9,947,366...9,956,876
Ensembl chrNW_004624749:9,947,188...9,956,983 		JBrowse link
G Fbxo31 F-box protein 31 involved_in ISO (PMID:19412162) UniProt PMID:19412162 NCBI chrNW_004624746:3,034,458...3,078,230
Ensembl chrNW_004624746:3,043,600...3,078,223 		JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:6,236,861...6,254,763
Ensembl chrNW_004624828:6,236,842...6,256,679 		JBrowse link
G LOC101725790 anaphase-promoting complex subunit 10 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624758:3,211,714...3,212,506 JBrowse link
G Ube2c ubiquitin conjugating enzyme E2 C involved_in ISO (PMID:19822757), (PMID:9122200) UniProt PMID:9122200 PMID:19822757 NCBI chrNW_004624790:8,756,758...8,760,078
Ensembl chrNW_004624790:8,751,662...8,760,057 		JBrowse link
G Ube2s ubiquitin conjugating enzyme E2 S involved_in ISO (PMID:19820702), (PMID:19822757) UniProt PMID:19820702 PMID:19822757 NCBI chrNW_004624832:1,913,948...1,918,750
Ensembl chrNW_004624832:1,913,636...1,918,848 		JBrowse link
CAT tailing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nemf nuclear export mediator factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624731:18,917,097...18,963,490
Ensembl chrNW_004624731:18,917,191...18,961,764 		JBrowse link
cytoplasm protein quality control by the ubiquitin-proteasome system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf126 ring finger protein 126 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624828:7,856,822...7,865,644
Ensembl chrNW_004624828:7,856,470...7,869,926 		JBrowse link
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624764:4,223,784...4,358,923
Ensembl chrNW_004624764:4,223,784...4,358,885 		JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chrNW_004624763:19,414,582...19,530,539
Ensembl chrNW_004624763:19,414,549...19,530,517 		JBrowse link
ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amfr autocrine motility factor receptor involved_in ISO (PMID:16168377), (PMID:24810856)
(PMID:11724934), (PMID:17872946)		 ParkinsonsUK-UCL
UniProt		 PMID:11724934 PMID:16168377 PMID:17872946 PMID:24810856 NCBI chrNW_004624757:136,289...179,743
Ensembl chrNW_004624757:136,283...179,138 		JBrowse link
G Aup1 AUP1 lipid droplet regulating VLDL assembly factor involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004624749:28,983,753...28,986,785
Ensembl chrNW_004624749:28,983,802...28,986,643 		JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISO (PMID:26565908)
(PMID:23129660), (PMID:24981174)		 UniProt PMID:23129660 PMID:24981174 PMID:26565908 NCBI chrNW_004624754:24,559,483...24,571,073
Ensembl chrNW_004624754:24,559,801...24,571,073 		JBrowse link
G Brsk2 BR serine/threonine kinase 2 involved_in ISO (PMID:23907667) ParkinsonsUK-UCL PMID:23907667 NCBI chrNW_004624766:21,296,115...21,334,054
Ensembl chrNW_004624766:21,296,120...21,334,040 		JBrowse link
G Ccdc47 coiled-coil domain containing 47 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25009997) Ensembl
MGI		 PMID:25009997 GO_REF:0000107 NCBI chrNW_004624849:1,237,364...1,282,588
Ensembl chrNW_004624849:1,237,370...1,282,611 		JBrowse link
G Derl1 derlin 1 involved_in ISO (PMID:18555783), (PMID:24089527), (PMID:25239945)
(PMID:15215856), (PMID:17872946)		 ParkinsonsUK-UCL
UniProt		 PMID:15215856 PMID:17872946 PMID:18555783 PMID:24089527 PMID:25239945 NCBI chrNW_004624735:31,832,711...31,857,687
Ensembl chrNW_004624735:31,832,701...31,857,687 		JBrowse link
G Derl2 derlin 2 involved_in ISO (PMID:16449189) UniProt PMID:16449189 NCBI chrNW_004624786:9,274,302...9,285,645
Ensembl chrNW_004624786:9,274,302...9,285,288 		JBrowse link
G Derl3 derlin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:10,357,560...10,359,779
Ensembl chrNW_004624747:10,357,627...10,359,779 		JBrowse link
G Dnajb12 DnaJ heat shock protein family (Hsp40) member B12 involved_in ISO (PMID:21148293), (PMID:21150129) UniProt PMID:21148293 PMID:21150129 NCBI chrNW_004624754:6,131,180...6,149,597
Ensembl chrNW_004624754:6,131,271...6,149,522 		JBrowse link
G Dnajb2 DnaJ heat shock protein family (Hsp40) member B2 involved_in ISO (PMID:15936278) BHF-UCL PMID:15936278 NCBI chrNW_004624823:5,730,553...5,737,668
Ensembl chrNW_004624823:5,730,386...5,738,459 		JBrowse link
G Dnajb9 DnaJ heat shock protein family (Hsp40) member B9 involved_in ISO (PMID:18400946)
(MGI:5499714|PMID:22267725)		 UniProt PMID:18400946 PMID:22267725 MGI:5499714 NCBI chrNW_004624739:21,187,581...21,193,345
Ensembl chrNW_004624739:21,187,581...21,193,337 		JBrowse link
G Dnajc10 DnaJ heat shock protein family (Hsp40) member C10 involved_in ISO (PMID:18400946)
(MGI:4943381|PMID:18653895), (MGI:4947480|PMID:21329881)		 UniProt PMID:18400946 PMID:18653895 PMID:21329881 MGI:4943381 MGI:4947480 NCBI chrNW_004624844:4,499,653...4,544,596
Ensembl chrNW_004624844:4,499,699...4,543,391 		JBrowse link
G Ecpas Ecm29 proteasome adaptor and scaffold involved_in ISO (PMID:15496406) UniProt PMID:15496406 NCBI chrNW_004624758:67,558...194,653
Ensembl chrNW_004624758:67,650...195,122 		JBrowse link
G Edem1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:21062743), (PMID:25092655)
(PMID:11375934)		 ParkinsonsUK-UCL
MGI		 PMID:11375934 PMID:21062743 PMID:25092655 NCBI chrNW_004624773:15,846,347...15,878,312
Ensembl chrNW_004624773:15,846,553...15,878,803 		JBrowse link
G Edem2 ER degradation enhancing alpha-mannosidase like protein 2 involved_in ISO (PMID:15537790), (PMID:25092655) ParkinsonsUK-UCL PMID:15537790 PMID:25092655 NCBI chrNW_004624842:4,259,551...4,288,181
Ensembl chrNW_004624842:4,259,605...4,292,518 		JBrowse link
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 involved_in ISO (PMID:25092655)
(MGI:3654428|PMID:16431915)		 ARUK-UCL
ParkinsonsUK-UCL		 PMID:16431915 PMID:25092655 MGI:3654428 NCBI chrNW_004624814:8,839,016...8,924,161
Ensembl chrNW_004624814:8,838,997...8,922,936 		JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 involved_in ISO (MGI:6467680|PMID:17707796) UniProt PMID:17707796 MGI:6467680 NCBI chrNW_004624749:15,867,444...15,950,757
Ensembl chrNW_004624749:15,869,569...15,950,757 		JBrowse link
G Erlec1 endoplasmic reticulum lectin 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624833:7,964,815...7,992,277
Ensembl chrNW_004624833:7,964,810...7,992,582 		JBrowse link
G Erlin1 ER lipid raft associated 1 involved_in ISO (PMID:19240031) UniProt PMID:19240031 NCBI chrNW_004624737:11,977,397...12,018,437
Ensembl chrNW_004624737:11,977,397...12,018,438 		JBrowse link
G Erlin2 ER lipid raft associated 2 involved_in ISO (PMID:19240031) UniProt PMID:19240031 NCBI chrNW_004624780:5,844,473...5,861,493
Ensembl chrNW_004624780:5,843,141...5,862,039 		JBrowse link
G Faf2 Fas associated factor family member 2 involved_in ISO (PMID:24215460) UniProt PMID:24215460 NCBI chrNW_004624733:13,608,993...13,674,200
Ensembl chrNW_004624733:13,608,360...13,674,175 		JBrowse link
G Fbxo2 F-box protein 2 acts_upstream_of_or_within ISO (PMID:15723043) MGI PMID:15723043 NCBI chrNW_004624818:1,300,191...1,311,245
Ensembl chrNW_004624818:1,299,067...1,309,667 		JBrowse link
G Fbxo6 F-box protein 6 involved_in ISO (MGI:5644019|PMID:21062743)
(MGI:2679753|PMID:12939278)		 ParkinsonsUK-UCL
UniProt		 PMID:12939278 PMID:21062743 MGI:2679753 MGI:5644019 NCBI chrNW_004624818:1,286,819...1,292,565
Ensembl chrNW_004624818:1,286,820...1,292,755 		JBrowse link
G Foxred2 FAD dependent oxidoreductase domain containing 2 involved_in ISO (PMID:19706418) UniProt PMID:19706418 NCBI chrNW_004624752:11,216,852...11,238,031
Ensembl chrNW_004624752:11,216,856...11,234,729 		JBrowse link
G Get4 guided entry of tail-anchored proteins factor 4 involved_in ISO (PMID:21636303) ParkinsonsUK-UCL PMID:21636303 NCBI chrNW_004624740:26,465,497...26,479,332
Ensembl chrNW_004624740:26,465,483...26,479,337 		JBrowse link
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:29,069,995...29,081,085
Ensembl chrNW_004624746:29,068,350...29,081,085 		JBrowse link
G Hsp90b1 heat shock protein 90 beta family member 1 involved_in ISO (PMID:18264092) UniProt PMID:18264092 NCBI chrNW_004624750:4,738,563...4,752,227
Ensembl chrNW_004624750:4,737,894...4,752,221 		JBrowse link
G Jkamp JNK1/MAPK8 associated membrane protein involved_in ISO (PMID:19269966) UniProt PMID:19269966 NCBI chrNW_004624734:41,610,973...41,625,736
Ensembl chrNW_004624734:41,610,985...41,625,707 		JBrowse link
G Man1a1 mannosidase alpha class 1A member 1 involved_in ISO (PMID:27108681) UniProt PMID:27108681 NCBI chrNW_004624798:10,986,465...11,117,182
Ensembl chrNW_004624798:10,986,519...11,117,650 		JBrowse link
G Man1b1 mannosidase alpha class 1B member 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:18003979), (PMID:21062743)
(PMID:15294975)		 ParkinsonsUK-UCL
MGI		 PMID:15294975 PMID:18003979 PMID:21062743 NCBI chrNW_004624760:813,657...826,020
Ensembl chrNW_004624760:813,045...825,153 		JBrowse link
G Nploc4 NPL4 homolog, ubiquitin recognition factor involved_in ISO PMID:12847084 ComplexPortal PMID:12847084 RGD:10047330 NCBI chrNW_004624801:10,531,107...10,589,502
Ensembl chrNW_004624801:10,533,064...10,589,096 		JBrowse link
G Os9 OS9 endoplasmic reticulum lectin involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004624802:10,221,633...10,252,008
Ensembl chrNW_004624802:10,222,259...10,252,039 		JBrowse link
G Rcn3 reticulocalbin 3 involved_in ISO (MGI:6201885|PMID:26252542) UniProt PMID:26252542 MGI:6201885 NCBI chrNW_004624832:4,699,294...4,709,188
Ensembl chrNW_004624832:4,699,299...4,709,150 		JBrowse link
G Rhbdd1 rhomboid domain containing 1 involved_in ISO (MGI:5437551|PMID:22795130) UniProt PMID:22795130 MGI:5437551 NCBI chrNW_004624843:1,217,655...1,362,406
Ensembl chrNW_004624843:1,219,808...1,360,135 		JBrowse link
G Rnf103 ring finger protein 103 involved_in ISO (PMID:18675248) UniProt PMID:18675248 NCBI chrNW_004624749:16,689,010...16,712,673
Ensembl chrNW_004624749:16,688,389...16,708,419 		JBrowse link
G Rnf139 ring finger protein 139 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:30,715,373...30,726,591
Ensembl chrNW_004624735:30,715,384...30,726,862 		JBrowse link
G Rnf185 ring finger protein 185 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:7,642,198...7,693,944
Ensembl chrNW_004624747:7,641,916...7,694,033 		JBrowse link
G Rnf5 ring finger protein 5 involved_in ISO (PMID:19269966), (PMID:24019521) UniProt PMID:19269966 PMID:24019521 NCBI chrNW_004624754:24,141,072...24,143,460
Ensembl chrNW_004624754:24,141,072...24,143,489 		JBrowse link
G Sdf2l1 stromal cell derived factor 2 like 1 acts_upstream_of_or_within ISO PMID:23444373 MGI PMID:23444373 RGD:8554667 NCBI chrNW_004624747:1,195,043...1,197,105
Ensembl chrNW_004624747:1,195,055...1,197,105 		JBrowse link
G Sec61b SEC61 translocon subunit beta involved_in ISO (PMID:8945469) UniProt PMID:8945469 NCBI chrNW_004624825:1,762,735...1,771,271
Ensembl chrNW_004624825:1,762,734...1,771,233 		JBrowse link
G Sel1l SEL1L adaptor subunit of SYVN1 ubiquitin ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624734:20,532,676...20,596,847
Ensembl chrNW_004624734:20,532,235...20,595,784 		JBrowse link
G Selenos selenoprotein S involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624768:3,539,369...3,550,716
Ensembl chrNW_004624768:3,539,465...3,550,211 		JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23129660) UniProt PMID:23129660 NCBI chrNW_004624828:5,832,274...5,854,472
Ensembl chrNW_004624828:5,834,586...5,843,528 		JBrowse link
G Stt3b STT3 oligosaccharyltransferase complex catalytic subunit B involved_in ISO (PMID:22607976) UniProt PMID:22607976 NCBI chrNW_004624788:9,614,932...9,726,773
Ensembl chrNW_004624788:9,615,658...9,725,240 		JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in ISO (PMID:23990462) ParkinsonsUK-UCL PMID:23990462 NCBI chrNW_004624913:1,491,873...1,494,249
Ensembl chrNW_004624913:1,491,991...1,494,249 		JBrowse link
G Syvn1 synoviolin 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:5645202|PMID:21454652)
(PMID:22607976), (PMID:26471130), (PMID:28827405)
(PMID:12459480), (PMID:14593114), (PMID:17059562), (PMID:22590560)
(PMID:21245296)		 ParkinsonsUK-UCL
UniProt
MGI		 PMID:12459480 PMID:14593114 PMID:17059562 PMID:21245296 PMID:21454652 More... MGI:5645202 NCBI chrNW_004624767:21,269,909...21,276,739
Ensembl chrNW_004624767:21,270,841...21,275,653 		JBrowse link
G Tmem129 transmembrane protein 129, E3 ubiquitin ligase involved_in ISO (PMID:24807418) ParkinsonsUK-UCL PMID:24807418 NCBI chrNW_004624755:25,694,391...25,699,294
Ensembl chrNW_004624755:25,694,026...25,699,489 		JBrowse link
G Tmem67 transmembrane protein 67 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624763:1,219,779...1,281,297
Ensembl chrNW_004624763:1,219,827...1,264,071 		JBrowse link
G Tmub1 transmembrane and ubiquitin like domain containing 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624800:5,538,328...5,541,024
Ensembl chrNW_004624800:5,538,279...5,541,024 		JBrowse link
G Tmub2 transmembrane and ubiquitin like domain containing 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624795:792,835...796,472
Ensembl chrNW_004624795:791,733...794,843 		JBrowse link
G Tor1a torsin family 1 member A involved_in ISO (MGI:3712415|PMID:17200151) UniProt PMID:17200151 MGI:3712415 NCBI chrNW_004624760:5,602,011...5,606,784
Ensembl chrNW_004624760:5,601,943...5,606,162 		JBrowse link
G Trim13 tripartite motif containing 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624748:4,683,518...4,765,944 JBrowse link
G Trim25 tripartite motif containing 25 involved_in ISO (PMID:24810856) ParkinsonsUK-UCL PMID:24810856 NCBI chrNW_004624795:11,967,908...11,986,707
Ensembl chrNW_004624795:11,971,610...11,986,608 		JBrowse link
G Ube2g2 ubiquitin conjugating enzyme E2 G2 involved_in
acts_upstream_of_or_within		 ISO (PMID:22607976)
(PMID:11278356)		 UniProt
MGI		 PMID:11278356 PMID:22607976 NCBI chrNW_004624745:30,353,530...30,382,780
Ensembl chrNW_004624745:30,353,369...30,382,782 		JBrowse link
G Ube2j1 ubiquitin conjugating enzyme E2 J1 involved_in
acts_upstream_of_or_within		 ISO (PMID:22607976)
(PMID:24020373)
(PMID:21245296)		 UniProt
MGI		 PMID:21245296 PMID:22607976 PMID:24020373 NCBI chrNW_004624799:4,811,686...4,838,708
Ensembl chrNW_004624799:4,811,649...4,841,511 		JBrowse link
G Ube2j2 ubiquitin conjugating enzyme E2 J2 involved_in ISO (PMID:24807418) ParkinsonsUK-UCL PMID:24807418 NCBI chrNW_004624818:8,326,592...8,347,108
Ensembl chrNW_004624818:8,326,781...8,347,370 		JBrowse link
G Ube4a ubiquitination factor E4A involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624784:13,754,234...13,792,616 JBrowse link
G Ube4b ubiquitination factor E4B involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624818:2,448,809...2,561,947
Ensembl chrNW_004624818:2,447,368...2,562,128 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO (PMID:19822669) UniProt PMID:19822669 NCBI chrNW_004624809:6,434,842...6,487,442
Ensembl chrNW_004624809:6,436,658...6,487,251 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:24215460) UniProt PMID:24215460 NCBI chrNW_004624910:1,547,942...1,551,323
Ensembl chrNW_004624910:1,548,249...1,550,126 		JBrowse link
G Ubxn4 UBX domain protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:35,055,726...35,113,016
Ensembl chrNW_004624732:35,056,022...35,110,987 		JBrowse link
G Ubxn6 UBX domain protein 6 involved_in ISO (PMID:19275885) UniProt PMID:19275885 NCBI chrNW_004624828:5,257,960...5,265,371
Ensembl chrNW_004624828:5,258,023...5,264,989 		JBrowse link
G Ubxn8 UBX domain protein 8 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624780:13,378,206...13,409,745 JBrowse link
G Ufd1 ubiquitin recognition factor in ER associated degradation 1 involved_in ISO (PMID:24089527)
PMID:12847084		 ParkinsonsUK-UCL
ComplexPortal		 PMID:12847084 PMID:24089527 RGD:10047330 NCBI chrNW_004624747:110,090...132,145
Ensembl chrNW_004624747:110,090...132,097 		JBrowse link
G Umod uromodulin acts_upstream_of_or_within ISO (PMID:28437467) MGI PMID:28437467 NCBI chrNW_004624782:3,639,955...3,654,026
Ensembl chrNW_004624782:3,640,214...3,652,324 		JBrowse link
G Usp19 ubiquitin specific peptidase 19 involved_in ISO (PMID:19465887) UniProt PMID:19465887 NCBI chrNW_004624730:3,134,419...3,145,512
Ensembl chrNW_004624730:3,133,595...3,146,221 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624915:253,240...270,440
Ensembl chrNW_004624915:253,240...270,501 		JBrowse link
G Wfs1 wolframin ER transmembrane glycoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624755:22,818,653...22,841,717
Ensembl chrNW_004624755:22,824,143...22,841,850 		JBrowse link
G Yod1 YOD1 deubiquitinase involved_in ISO (PMID:19818707) UniProt PMID:19818707 NCBI chrNW_004624807:4,443,653...4,448,759
Ensembl chrNW_004624807:4,443,650...4,446,373 		JBrowse link
membrane protein proteolysis involved in retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hm13 histocompatibility minor 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624741:924,040...977,646
Ensembl chrNW_004624741:921,023...977,703 		JBrowse link
G Rhbdd1 rhomboid domain containing 1 involved_in ISO (MGI:5437551|PMID:22795130) ParkinsonsUK-UCL PMID:22795130 MGI:5437551 NCBI chrNW_004624843:1,217,655...1,362,406
Ensembl chrNW_004624843:1,219,808...1,360,135 		JBrowse link
negative regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp11 aquaporin 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624863:679,049...694,765
Ensembl chrNW_004624863:678,953...694,505 		JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23129660) UniProt PMID:23129660 NCBI chrNW_004624828:5,832,274...5,854,472
Ensembl chrNW_004624828:5,834,586...5,843,528 		JBrowse link
G Svip small VCP interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:13,724,052...13,751,774
Ensembl chrNW_004624766:13,744,230...13,751,725 		JBrowse link
G Ubxn1 UBX domain protein 1 involved_in ISO (PMID:21135095) ParkinsonsUK-UCL PMID:21135095 NCBI chrNW_004624926:1,179,498...1,182,445
Ensembl chrNW_004624926:1,179,584...1,182,180 		JBrowse link
G Ubxn2a UBX domain protein 2A involved_in ISO (PMID:26265139) UniProt PMID:26265139 NCBI chrNW_004624738:6,313,925...6,341,999
Ensembl chrNW_004624738:6,323,404...6,341,996 		JBrowse link
G Usp14 ubiquitin specific peptidase 14 involved_in ISO (PMID:19135427) ParkinsonsUK-UCL PMID:19135427 NCBI chrNW_004624770:10,741,247...10,769,837 JBrowse link
G Usp25 ubiquitin specific peptidase 25 involved_in ISO (PMID:22590560) ParkinsonsUK-UCL PMID:22590560 NCBI chrNW_004624745:4,170,328...4,306,604
Ensembl chrNW_004624745:4,169,938...4,305,122 		JBrowse link
negative regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alad aminolevulinate dehydratase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:21,698,689...21,709,907
Ensembl chrNW_004624760:21,698,587...21,711,822 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in ISO (PMID:21669198) BHF-UCL PMID:21669198 NCBI chrNW_004624746:11,393,439...11,405,152
Ensembl chrNW_004624746:11,393,439...11,405,126 		JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 involved_in ISO PMID:17517623
(MGI:6148636|PMID:17517623)		 ARUK-UCL PMID:17517623 MGI:6148636 RGD:13514081 NCBI chrNW_004624754:15,609,932...15,615,580
Ensembl chrNW_004624754:15,609,920...15,614,263 		JBrowse link
G Lamp3 lysosomal associated membrane protein 3 involved_in ISO (PMID:25681212) ParkinsonsUK-UCL PMID:25681212 NCBI chrNW_004624730:73,264,110...73,298,951 JBrowse link
G LOC101701770 protein SCO1 homolog, mitochondrial acts_upstream_of_or_within ISO (PMID:25683716) MGI PMID:25683716 NCBI chrNW_004624786:13,038,384...13,053,250
Ensembl chrNW_004624786:13,036,426...13,053,210 		JBrowse link
G Marchf7 membrane associated ring-CH-type finger 7 involved_in ISO (PMID:29295817) UniProt PMID:29295817 NCBI chrNW_004624732:5,889,181...5,928,471 JBrowse link
G Ophn1 oligophrenin 1 involved_in ISO (MGI:5303043|PMID:21874017) UniProt PMID:21874017 MGI:5303043 NCBI chrNW_004624891:1,907,233...2,429,714
Ensembl chrNW_004624891:1,908,044...2,425,144 		JBrowse link
G Prkcg protein kinase C gamma involved_in ISO (MGI:5467682|PMID:23185022) UniProt PMID:23185022 MGI:5467682 NCBI chrNW_004624832:2,548,286...2,566,365
Ensembl chrNW_004624832:2,547,535...2,566,402 		JBrowse link
G Psme3ip1 proteasome activator subunit 3 interacting protein 1 involved_in ISO (PMID:29934401) UniProt PMID:29934401 NCBI chrNW_004624746:28,862,204...28,900,758
Ensembl chrNW_004624746:28,862,420...28,900,668 		JBrowse link
G Psmf1 proteasome inhibitor subunit 1 involved_in ISO (PMID:10764772) UniProt PMID:10764772 NCBI chrNW_004624741:2,402,616...2,443,461
Ensembl chrNW_004624741:2,409,187...2,443,071 		JBrowse link
G Usp19 ubiquitin specific peptidase 19 involved_in ISO (MGI:5614537|PMID:25088257) ParkinsonsUK-UCL PMID:25088257 MGI:5614537 NCBI chrNW_004624730:3,134,419...3,145,512
Ensembl chrNW_004624730:3,133,595...3,146,221 		JBrowse link
negative regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag5 BAG cochaperone 5 involved_in ISO (PMID:24475098) ParkinsonsUK-UCL PMID:24475098 NCBI chrNW_004624734:1,315,052...1,320,627 JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISO (MGI:3808636|PMID:18678708) UniProt PMID:18678708 MGI:3808636 NCBI chrNW_004624754:24,559,483...24,571,073
Ensembl chrNW_004624754:24,559,801...24,571,073 		JBrowse link
G Camlg calcium modulating ligand involved_in ISO (PMID:20553626) UniProt PMID:20553626 NCBI chrNW_004624733:12,298,452...12,307,684
Ensembl chrNW_004624733:12,298,018...12,307,721 		JBrowse link
G Ccar2 cell cycle and apoptosis regulator 2 involved_in ISO (PMID:23398316) UniProt PMID:23398316 NCBI chrNW_004624758:18,106,621...18,120,910
Ensembl chrNW_004624758:18,106,606...18,120,907 		JBrowse link
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chrNW_004624824:8,174,653...8,400,760
Ensembl chrNW_004624824:8,174,610...8,400,723 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chrNW_004624741:1,566,380...1,635,365 JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chrNW_004624746:28,012,543...28,064,610
Ensembl chrNW_004624746:28,012,556...28,060,413 		JBrowse link
G Csnk2b casein kinase 2 beta involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chrNW_004624754:24,533,134...24,538,233 JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:28263186) UniProt PMID:28263186 NCBI chrNW_004624741:4,292,256...4,305,424
Ensembl chrNW_004624741:4,292,256...4,305,504 		JBrowse link
G Eif3h eukaryotic translation initiation factor 3 subunit H involved_in ISO (PMID:32269044) FlyBase PMID:32269044 NCBI chrNW_004624763:14,938,624...15,027,001
Ensembl chrNW_004624763:14,935,271...15,027,010 		JBrowse link
G Fhit fragile histidine triad diadenosine triphosphatase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624822:6,621,609...8,069,590
Ensembl chrNW_004624822:6,621,909...7,380,047 		JBrowse link
G Hfe homeostatic iron regulator involved_in ISO (MGI:5603002|PMID:24904118)
(PMID:24904118)		 BHF-UCL PMID:24904118 MGI:5603002 NCBI chrNW_004624756:821,738...831,482
Ensembl chrNW_004624756:823,947...831,376 		JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 involved_in ISO (PMID:24613385) UniProt PMID:24613385 NCBI chrNW_004624754:15,609,932...15,615,580
Ensembl chrNW_004624754:15,609,920...15,614,263 		JBrowse link
G Klhl40 kelch like family member 40 acts_upstream_of_or_within ISO (PMID:24960163) MGI PMID:24960163 NCBI chrNW_004624730:77,004,787...77,012,643
Ensembl chrNW_004624730:77,007,063...77,011,413 		JBrowse link
G LOC101712592 E3 ubiquitin-protein ligase TRIM39 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:25,179,235...25,192,259
Ensembl chrNW_004624754:25,179,334...25,191,787 		JBrowse link
G LOC101713959 PDZ domain-containing protein GIPC1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624901:1,605,561...1,620,376
Ensembl chrNW_004624901:1,604,420...1,615,460
Ensembl chrNW_004624901:1,604,420...1,615,460 		JBrowse link
G Map1a microtubule associated protein 1A involved_in ISO (MGI:5703671|PMID:26609151) ARUK-UCL PMID:26609151 MGI:5703671 NCBI chrNW_004624804:10,611,657...10,632,199
Ensembl chrNW_004624804:10,611,672...10,630,881 		JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of_or_within ISO (PMID:23695157) MGI PMID:23695157 NCBI chrNW_004624923:952,782...1,062,391 JBrowse link
G N4bp1 NEDD4 binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624914:2,319,809...2,369,128
Ensembl chrNW_004624914:2,319,474...2,369,078 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:22522597) UniProt PMID:22522597 NCBI chrNW_004624832:6,144,260...6,154,172
Ensembl chrNW_004624832:6,145,749...6,154,411 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in ISO (PMID:26678539) UniProt PMID:26678539 NCBI chrNW_004624903:1,863,110...1,912,299
Ensembl chrNW_004624903:1,863,337...1,910,177 		JBrowse link
G Park7 Parkinsonism associated deglycase involved_in ISO (PMID:17015834) ParkinsonsUK-UCL PMID:17015834 NCBI chrNW_004624818:3,900,917...3,915,457
Ensembl chrNW_004624818:3,900,917...3,911,042 		JBrowse link
G Pbk PDZ binding kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21715333) Ensembl
MGI		 PMID:21715333 GO_REF:0000107 NCBI chrNW_004624758:22,603,076...22,625,817
Ensembl chrNW_004624758:22,603,039...22,625,763 		JBrowse link
G Phf20l1 PHD finger protein 20 like 1 involved_in ISO (PMID:24492612) UniProt PMID:24492612 NCBI chrNW_004624735:23,101,075...23,171,195
Ensembl chrNW_004624735:23,101,075...23,171,145 		JBrowse link
G Rpl11 ribosomal protein L11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:8,258,656...8,262,842
Ensembl chrNW_004624764:8,258,709...8,266,016 		JBrowse link
G Rybp RING1 and YY1 binding protein involved_in ISO (PMID:27060496) UniProt PMID:27060496 NCBI chrNW_004624773:6,899,927...6,993,434
Ensembl chrNW_004624773:6,899,927...6,993,526 		JBrowse link
G Senp1 SUMO specific peptidase 1 acts_upstream_of_or_within ISO (PMID:17981124) MGI PMID:17981124 NCBI chrNW_004624816:4,173,321...4,231,711
Ensembl chrNW_004624816:4,179,890...4,232,312 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:16611981) MGI PMID:16611981 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 acts_upstream_of_or_within ISO (PMID:22285184) MGI PMID:22285184 NCBI chrNW_004624730:73,696,734...73,856,082
Ensembl chrNW_004624730:73,696,749...73,856,082 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in ISO (PMID:11278372) BHF-UCL PMID:11278372 NCBI chrNW_004624905:240,760...244,656
Ensembl chrNW_004624905:240,760...244,656 		JBrowse link
G Tlk2 tousled like kinase 2 involved_in ISO (PMID:20016786) UniProt PMID:20016786 NCBI chrNW_004624849:24,536...150,142
Ensembl chrNW_004624849:24,867...151,002 		JBrowse link
G Ttc36 tetratricopeptide repeat domain 36 acts_upstream_of_or_within ISO (PMID:31537781) MGI PMID:31537781 NCBI chrNW_004624784:13,913,218...13,931,581
Ensembl chrNW_004624784:13,913,225...13,931,581 		JBrowse link
G Ubxn1 UBX domain protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624926:1,179,498...1,182,445
Ensembl chrNW_004624926:1,179,584...1,182,180 		JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in ISO (PMID:23770237) UniProt PMID:23770237 NCBI chrNW_004624814:529,100...568,387
Ensembl chrNW_004624814:529,084...567,666 		JBrowse link
G Usp26 ubiquitin specific peptidase 26 involved_in ISO (PMID:28839133)
(MGI:5926846|PMID:28839133)		 UniProt PMID:28839133 MGI:5926846 NCBI chrNW_004624797:12,724,584...12,797,308 JBrowse link
G Usp38 ubiquitin specific peptidase 38 involved_in ISO (PMID:34102342) UniProt PMID:34102342 NCBI chrNW_004624853:2,485,347...2,519,165
Ensembl chrNW_004624853:2,485,332...2,518,070 		JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in ISO (PMID:26678539) UniProt PMID:26678539 NCBI chrNW_004624824:6,277,111...6,338,051
Ensembl chrNW_004624824:6,276,354...6,338,227 		JBrowse link
G Usp9x ubiquitin specific peptidase 9 X-linked involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:14,403,361...14,527,854
Ensembl chrNW_004624762:14,405,560...14,527,639 		JBrowse link
G Wac WW domain containing adaptor with coiled-coil involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chrNW_004624805:6,813,100...6,898,686 JBrowse link
negative regulation of retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Derl2 derlin 2 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624786:9,274,302...9,285,645
Ensembl chrNW_004624786:9,274,302...9,285,288 		JBrowse link
G Derl3 derlin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:10,357,560...10,359,779
Ensembl chrNW_004624747:10,357,627...10,359,779 		JBrowse link
G Erlec1 endoplasmic reticulum lectin 1 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624833:7,964,815...7,992,277
Ensembl chrNW_004624833:7,964,810...7,992,582 		JBrowse link
G Os9 OS9 endoplasmic reticulum lectin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624802:10,221,633...10,252,008
Ensembl chrNW_004624802:10,222,259...10,252,039 		JBrowse link
G Svip small VCP interacting protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624766:13,724,052...13,751,774
Ensembl chrNW_004624766:13,744,230...13,751,725 		JBrowse link
G Ubac2 UBA domain containing 2 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624793:11,658,268...11,824,632
Ensembl chrNW_004624793:11,657,526...11,824,570 		JBrowse link
G Ube2g2 ubiquitin conjugating enzyme E2 G2 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624745:30,353,530...30,382,780
Ensembl chrNW_004624745:30,353,369...30,382,782 		JBrowse link
G Ube2j1 ubiquitin conjugating enzyme E2 J1 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624799:4,811,686...4,838,708
Ensembl chrNW_004624799:4,811,649...4,841,511 		JBrowse link
G Yod1 YOD1 deubiquitinase involved_in ISO (PMID:24068323) ParkinsonsUK-UCL PMID:24068323 NCBI chrNW_004624807:4,443,653...4,448,759
Ensembl chrNW_004624807:4,443,650...4,446,373 		JBrowse link
negative regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pabpn1l PABPN1 like, cytoplasmic acts_upstream_of_or_within ISO (PMID:32558204) MGI PMID:32558204 NCBI chrNW_004624746:776,692...779,187
Ensembl chrNW_004624746:776,677...779,555 		JBrowse link
G Styx serine/threonine/tyrosine interacting protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:16,342,926...16,384,673
Ensembl chrNW_004624731:16,352,503...16,384,624 		JBrowse link
nuclear protein quality control by the ubiquitin-proteasome system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akirin2 akirin 2 acts_upstream_of_positive_effect
involved_in		 ISO
IEA		 (PMID:34711951) UniProt
Ensembl		 PMID:34711951 GO_REF:0000107 NCBI chrNW_004624799:6,620,102...6,644,286
Ensembl chrNW_004624799:6,625,549...6,644,286 		JBrowse link
G Cul3 cullin 3 involved_in ISO (PMID:27561354) UniProt PMID:27561354 NCBI chrNW_004624823:767,347...854,065
Ensembl chrNW_004624823:766,780...852,727 		JBrowse link
G Klhl15 kelch like family member 15 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624897:361,663...429,401
Ensembl chrNW_004624897:357,551...406,561 		JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:37478846), (PMID:37478862) UniProt PMID:37478846 PMID:37478862 NCBI chrNW_004624763:19,414,582...19,530,539
Ensembl chrNW_004624763:19,414,549...19,530,517 		JBrowse link
positive regulation of anaphase-promoting complex-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc20 cell division cycle 20 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624892:2,675,980...2,679,709
Ensembl chrNW_004624892:2,675,754...2,679,793 		JBrowse link
G Cdc20b cell division cycle 20B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624759:4,112,012...4,174,838
Ensembl chrNW_004624759:4,109,203...4,176,824 		JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:6,236,861...6,254,763
Ensembl chrNW_004624828:6,236,842...6,256,679 		JBrowse link
positive regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn3 ataxin 3 involved_in ISO (PMID:17000876) ParkinsonsUK-UCL PMID:17000876 NCBI chrNW_004624734:8,685,994...8,726,329 JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISO (PMID:24424410) ParkinsonsUK-UCL PMID:24424410 NCBI chrNW_004624754:24,559,483...24,571,073
Ensembl chrNW_004624754:24,559,801...24,571,073 		JBrowse link
G Bcap31 B cell receptor associated protein 31 involved_in ISO (PMID:18555783) ParkinsonsUK-UCL PMID:18555783 NCBI chrNW_004624946:398,901...420,767
Ensembl chrNW_004624946:399,227...419,642 		JBrowse link
G Cav1 caveolin 1 involved_in ISO (PMID:24089527) ParkinsonsUK-UCL PMID:24089527 NCBI chrNW_004624827:2,844,855...2,878,367
Ensembl chrNW_004624827:2,844,115...2,879,179 		JBrowse link
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:29,069,995...29,081,085
Ensembl chrNW_004624746:29,068,350...29,081,085 		JBrowse link
G Rnf185 ring finger protein 185 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:7,642,198...7,693,944
Ensembl chrNW_004624747:7,641,916...7,694,033 		JBrowse link
G Rnft1 ring finger protein, transmembrane 1 involved_in ISO (PMID:27485036) UniProt PMID:27485036 NCBI chrNW_004624871:1,707,570...1,721,026
Ensembl chrNW_004624871:1,707,509...1,721,078 		JBrowse link
G Rnft2 ring finger protein, transmembrane 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624747:16,346,149...16,459,312
Ensembl chrNW_004624747:16,389,005...16,459,805 		JBrowse link
G Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23246001) ParkinsonsUK-UCL PMID:23246001 NCBI chrNW_004624828:5,832,274...5,854,472
Ensembl chrNW_004624828:5,834,586...5,843,528 		JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in ISO (PMID:26265139) UniProt PMID:26265139 NCBI chrNW_004624913:1,491,873...1,494,249
Ensembl chrNW_004624913:1,491,991...1,494,249 		JBrowse link
G Tmem259 transmembrane protein 259 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:7,606,177...7,614,644
Ensembl chrNW_004624828:7,606,339...7,614,107 		JBrowse link
G Tmem67 transmembrane protein 67 ISO RGD PMID:19815549 RGD:8554391 NCBI chrNW_004624763:1,219,779...1,281,297
Ensembl chrNW_004624763:1,219,827...1,264,071 		JBrowse link
G Tmx1 thioredoxin related transmembrane protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624731:17,713,812...17,730,521
Ensembl chrNW_004624731:17,718,868...17,730,586 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO (PMID:18307982) UniProt PMID:18307982 NCBI chrNW_004624809:6,434,842...6,487,442
Ensembl chrNW_004624809:6,436,658...6,487,251 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:18307982) UniProt PMID:18307982 NCBI chrNW_004624910:1,547,942...1,551,323
Ensembl chrNW_004624910:1,548,249...1,550,126 		JBrowse link
G Usp13 ubiquitin specific peptidase 13 involved_in ISO (PMID:24424410) ParkinsonsUK-UCL PMID:24424410 NCBI chrNW_004624730:57,384,878...57,495,761
Ensembl chrNW_004624730:57,384,884...57,495,765 		JBrowse link
G Wfs1 wolframin ER transmembrane glycoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624755:22,818,653...22,841,717
Ensembl chrNW_004624755:22,824,143...22,841,850 		JBrowse link
positive regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag2 BAG cochaperone 2 involved_in ISO (MGI:6148635|PMID:19228967) ARUK-UCL PMID:19228967 MGI:6148635 NCBI chrNW_004624753:18,983,449...18,986,078 JBrowse link
G Dab2ip DAB2 interacting protein involved_in ISO (PMID:20080667) UniProt PMID:20080667 NCBI chrNW_004624760:13,472,500...13,658,070
Ensembl chrNW_004624760:13,472,672...13,657,930 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:23675531) UniProt PMID:23675531 NCBI chrNW_004624741:4,292,256...4,305,424
Ensembl chrNW_004624741:4,292,256...4,305,504 		JBrowse link
G Ecscr endothelial cell surface expressed chemotaxis and apoptosis regulator acts_upstream_of_or_within ISO (PMID:19416853) MGI PMID:19416853 NCBI chrNW_004624743:32,248,768...32,272,352
Ensembl chrNW_004624743:32,246,966...32,256,617 		JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in ISO (MGI:5543313|PMID:23858059)
(PMID:23858059)		 ParkinsonsUK-UCL PMID:23858059 MGI:5543313 NCBI chrNW_004624858:3,778,842...3,974,351
Ensembl chrNW_004624858:3,775,795...3,873,336 		JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 involved_in ISO (MGI:5770038|PMID:24709664) UniProt PMID:24709664 MGI:5770038 NCBI chrNW_004624883:645,524...681,705
Ensembl chrNW_004624883:645,449...682,292 		JBrowse link
G Kcne2 potassium voltage-gated channel subfamily E regulatory subunit 2 involved_in ISO (PMID:22180649) BHF-UCL PMID:22180649 NCBI chrNW_004624745:22,552,809...22,553,321
Ensembl chrNW_004624745:22,525,037...22,556,000 		JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISO (PMID:16300740) UniProt PMID:16300740 NCBI chrNW_004624782:13,042,938...13,044,298
Ensembl chrNW_004624782:13,042,939...13,044,267 		JBrowse link
G Oaz1 ornithine decarboxylase antizyme 1 ISO RGD PMID:12359729 RGD:7245486 NCBI chrNW_004624828:6,617,342...6,620,466
Ensembl chrNW_004624828:6,617,727...6,620,402 		JBrowse link
G Osbpl7 oxysterol binding protein like 7 involved_in ISO (PMID:21669198) BHF-UCL PMID:21669198 NCBI chrNW_004624795:4,468,767...4,479,654
Ensembl chrNW_004624795:4,469,551...4,479,798 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:23858059) ParkinsonsUK-UCL PMID:23858059 NCBI chrNW_004624855:430,148...1,992,121
Ensembl chrNW_004624855:430,260...1,989,747 		JBrowse link
G Psmc1 proteasome 26S subunit, ATPase 1 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004624734:12,153,919...12,174,650 JBrowse link
G Psmc2 proteasome 26S subunit, ATPase 2 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004624739:26,001,871...26,015,633
Ensembl chrNW_004624739:26,001,871...26,016,040 		JBrowse link
G Psmc3 proteasome 26S subunit, ATPase 3 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004624767:1,361,970...1,367,282
Ensembl chrNW_004624767:1,362,132...1,372,083 		JBrowse link
G Psmc4 proteasome 26S subunit, ATPase 4 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004624925:119,837...127,678
Ensembl chrNW_004624925:119,777...130,723 		JBrowse link
G Psmc5 proteasome 26S subunit, ATPase 5 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004624849:1,349,787...1,354,776
Ensembl chrNW_004624849:1,349,720...1,354,775 		JBrowse link
G Psmc6 proteasome 26S subunit, ATPase 6 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004624731:16,386,194...16,414,554
Ensembl chrNW_004624731:16,386,194...16,414,485 		JBrowse link
G Rnf40 ring finger protein 40 ISO RGD PMID:12121982 RGD:633892 NCBI chrNW_004624782:13,884,737...13,896,496
Ensembl chrNW_004624782:13,884,830...13,896,500 		JBrowse link
G Tmtc3 transmembrane O-mannosyltransferase targeting cadherins 3 involved_in ISO (PMID:21603654) UniProt PMID:21603654 NCBI chrNW_004624837:7,139,006...7,205,077
Ensembl chrNW_004624837:7,138,419...7,190,194 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (MGI:6150565|PMID:29518356) ARUK-UCL PMID:29518356 MGI:6150565 NCBI chrNW_004624754:17,643,397...17,649,255
Ensembl chrNW_004624754:17,643,363...17,648,231 		JBrowse link
positive regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15937334) Ensembl
MGI		 PMID:15937334 GO_REF:0000107 NCBI chrNW_004624734:507,880...525,295
Ensembl chrNW_004624734:509,368...525,295 		JBrowse link
G Ankib1 ankyrin repeat and IBR domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624809:787,932...978,315
Ensembl chrNW_004624809:790,496...927,430 		JBrowse link
G Arih2 ariadne RBR E3 ubiquitin protein ligase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:2,953,649...3,023,716
Ensembl chrNW_004624730:2,953,669...3,023,042 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:23152632) MGI PMID:23152632 NCBI chrNW_004624943:231,978...480,933
Ensembl chrNW_004624943:232,618...481,290 		JBrowse link
G Aurka aurora kinase A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17060449) Ensembl
MGI		 PMID:17060449 GO_REF:0000107 NCBI chrNW_004624790:143,818...162,065
Ensembl chrNW_004624790:147,149...161,344 		JBrowse link
G Axin1 axin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16601693) Ensembl
MGI
TreeGrafter		 PMID:16601693 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624913:1,139,165...1,195,477
Ensembl chrNW_004624913:1,139,165...1,195,230 		JBrowse link
G Axin2 axin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624870:2,803,743...2,832,489
Ensembl chrNW_004624870:2,800,873...2,832,626 		JBrowse link
G Bag2 BAG cochaperone 2 NOT|involved_in ISO (MGI:6148635|PMID:19228967) ARUK-UCL PMID:19228967 MGI:6148635 NCBI chrNW_004624753:18,983,449...18,986,078 JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22302990) MGI
Ensembl		 PMID:22302990 GO_REF:0000107 NCBI chrNW_004624777:2,105,122...2,151,399
Ensembl chrNW_004624777:2,104,765...2,151,402 		JBrowse link
G Cbfa2t3 CBFA2/RUNX1 partner transcriptional co-repressor 3 involved_in ISO (PMID:25974097) UniProt PMID:25974097 NCBI chrNW_004624746:716,848...773,169
Ensembl chrNW_004624746:716,836...773,169 		JBrowse link
G Chfr checkpoint with forkhead and ring finger domains acts_upstream_of_or_within ISO (PMID:22285184) MGI PMID:22285184 NCBI chrNW_004624747:28,187,356...28,222,041
Ensembl chrNW_004624747:28,188,419...28,221,525 		JBrowse link
G Clu clusterin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624758:22,431,331...22,444,185
Ensembl chrNW_004624758:22,426,918...22,444,357 		JBrowse link
G Cop1 COP1 E3 ubiquitin ligase involved_in ISO (PMID:19805145) UniProt PMID:19805145 NCBI chrNW_004624771:5,922,086...6,132,537
Ensembl chrNW_004624771:5,922,067...6,133,597 		JBrowse link
G Csnk1a1 casein kinase 1 alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624774:8,815,021...8,862,657
Ensembl chrNW_004624774:8,815,023...8,862,878 		JBrowse link
G Csnk1d casein kinase 1 delta involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624801:11,031,102...11,074,100
Ensembl chrNW_004624801:11,032,021...11,058,551 		JBrowse link
G Dab2 DAB adaptor protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:15,459,436...15,520,225
Ensembl chrNW_004624759:15,459,288...15,520,924 		JBrowse link
G Dda1 DET1 and DDB1 associated 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624908:631,429...637,158
Ensembl chrNW_004624908:631,432...637,104 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 involved_in ISO (PMID:23675531) ParkinsonsUK-UCL PMID:23675531 NCBI chrNW_004624741:4,292,256...4,305,424
Ensembl chrNW_004624741:4,292,256...4,305,504 		JBrowse link
G Det1 DET1 partner of COP1 E3 ubiquitin ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624768:15,869,949...15,919,368
Ensembl chrNW_004624768:15,870,035...15,884,201 		JBrowse link
G Dnajb2 DnaJ heat shock protein family (Hsp40) member B2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624823:5,730,553...5,737,668
Ensembl chrNW_004624823:5,730,386...5,738,459 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in ISO (PMID:20177058) BHF-UCL PMID:20177058 NCBI chrNW_004624818:8,267,111...8,283,755
Ensembl chrNW_004624818:8,267,128...8,278,725 		JBrowse link
G Fbxo22 F-box protein 22 acts_upstream_of_or_within ISO (PMID:19319192) MGI PMID:19319192 NCBI chrNW_004624894:2,158,065...2,177,945
Ensembl chrNW_004624894:2,158,065...2,178,431 		JBrowse link
G Fbxw8 F-box and WD repeat domain containing 8 involved_in ISO (MGI:6148490|PMID:29153991) UniProt PMID:29153991 MGI:6148490 NCBI chrNW_004624747:16,226,025...16,343,839
Ensembl chrNW_004624747:16,233,312...16,343,824 		JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624786:9,857,370...9,859,675
Ensembl chrNW_004624786:9,857,370...9,860,063 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (MGI:5501380|PMID:23707074) ParkinsonsUK-UCL PMID:23707074 MGI:5501380 NCBI chrNW_004624885:2,315,371...2,321,327
Ensembl chrNW_004624885:2,315,142...2,321,327 		JBrowse link
G Gclc glutamate-cysteine ligase catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17189825) Ensembl
MGI		 PMID:17189825 GO_REF:0000107 NCBI chrNW_004624850:749,046...793,654
Ensembl chrNW_004624850:749,050...793,959 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in ISO (PMID:25897075) ARUK-UCL PMID:25897075 NCBI chrNW_004624907:511,919...522,106
Ensembl chrNW_004624907:511,889...522,168 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22660580) Ensembl
MGI		 PMID:22660580 GO_REF:0000107 NCBI chrNW_004624731:28,178,647...28,368,784
Ensembl chrNW_004624731:28,178,628...28,366,420 		JBrowse link
G Hspbp1 HSPA (Hsp70) binding protein 1 involved_in ISO (PMID:16831871) BHF-UCL PMID:16831871 NCBI chrNW_004624832:1,997,748...2,009,683
Ensembl chrNW_004624832:1,998,005...2,009,683 		JBrowse link
G Il33 interleukin 33 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22660580) Ensembl
MGI		 PMID:22660580 GO_REF:0000107 NCBI chrNW_004624736:10,733,944...10,786,188
Ensembl chrNW_004624736:10,764,486...10,784,864 		JBrowse link
G Klhl40 kelch like family member 40 involved_in ISO (MGI:5700633|PMID:25940086) UniProt PMID:25940086 MGI:5700633 NCBI chrNW_004624730:77,004,787...77,012,643
Ensembl chrNW_004624730:77,007,063...77,011,413 		JBrowse link
G LOC101700637 heat shock 70 kDa protein 1B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:24,413,048...24,415,862 JBrowse link
G LOC101708403 casein kinase I involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:9,677,468...9,708,816
Ensembl chrNW_004624752:9,686,502...9,711,033 		JBrowse link
G Lrrk2 leucine rich repeat kinase 2 involved_in ISO (MGI:4454597|PMID:20457918) BHF-UCL PMID:20457918 MGI:4454597 NCBI chrNW_004624778:106,594...279,325
Ensembl chrNW_004624778:108,761...279,230 		JBrowse link
G Mapk8 mitogen-activated protein kinase 8 involved_in ISO (MGI:6148490|PMID:29153991) UniProt PMID:29153991 MGI:6148490 NCBI chrNW_004624928:1,442,216...1,494,275
Ensembl chrNW_004624928:1,439,146...1,494,266 		JBrowse link
G Mapk9 mitogen-activated protein kinase 9 involved_in ISO (MGI:6148490|PMID:29153991) UniProt PMID:29153991 MGI:6148490 NCBI chrNW_004624733:42,998,948...43,048,392
Ensembl chrNW_004624733:42,999,339...43,048,285 		JBrowse link
G Nkd2 NKD inhibitor of WNT signaling pathway 2 involved_in ISO (PMID:20177058) BHF-UCL PMID:20177058 NCBI chrNW_004624751:495,561...507,756 JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:25818168), (PMID:27323397)
(MGI:5897550|PMID:21804542)		 UniProt PMID:21804542 PMID:25818168 PMID:27323397 MGI:5897550 NCBI chrNW_004624832:6,144,260...6,154,172
Ensembl chrNW_004624832:6,145,749...6,154,411 		JBrowse link
G Nub1 negative regulator of ubiquitin like proteins 1 involved_in ISO (PMID:16707496) UniProt PMID:16707496 NCBI chrNW_004624800:5,314,203...5,345,301
Ensembl chrNW_004624800:5,315,381...5,345,801 		JBrowse link
G Pabir1 PP2A Aalpha (PPP2R1A) and B55A (PPP2R2A) interacting phosphatase regulator 1 involved_in ISO (PMID:27588481) UniProt PMID:27588481 NCBI chrNW_004624736:4,333,707...4,341,205
Ensembl chrNW_004624736:4,340,195...4,341,058 		JBrowse link
G Pias1 protein inhibitor of activated STAT 1 involved_in ISO (MGI:5487503|PMID:22406621) UniProt PMID:22406621 MGI:5487503 NCBI chrNW_004624781:4,893,308...5,046,928
Ensembl chrNW_004624781:4,893,308...5,046,582 		JBrowse link
G Plk1 polo like kinase 1 involved_in ISO (PMID:19473992) UniProt PMID:19473992 NCBI chrNW_004624782:8,811,593...8,823,060
Ensembl chrNW_004624782:8,811,616...8,826,749 		JBrowse link
G Plk2 polo like kinase 2 ISO RGD PMID:18723513 RGD:7241135 NCBI chrNW_004624759:811,320...817,401
Ensembl chrNW_004624759:811,316...817,474 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624855:430,148...1,992,121
Ensembl chrNW_004624855:430,260...1,989,747 		JBrowse link
G Psen1 presenilin 1 involved_in ISO (MGI:4887523|PMID:20208556) BHF-UCL PMID:20208556 MGI:4887523 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743 		JBrowse link
G Psen2 presenilin 2 involved_in ISO (MGI:4887523|PMID:20208556) BHF-UCL PMID:20208556 MGI:4887523 NCBI chrNW_004624771:17,183,538...17,205,460
Ensembl chrNW_004624771:17,183,447...17,224,188 		JBrowse link
G Psmd10 proteasome 26S subunit, non-ATPase 10 involved_in ISO (PMID:16023600) UniProt PMID:16023600 NCBI chrNW_004624803:8,407,462...8,420,316 JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in ISO (PMID:19785988) UniProt PMID:19785988 NCBI chrNW_004624958:181,325...185,620
Ensembl chrNW_004624958:181,273...185,620 		JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein involved_in ISO (PMID:26296656) CAFA PMID:26296656 NCBI chrNW_004624901:515,761...522,845
Ensembl chrNW_004624901:516,855...523,337 		JBrowse link
G Rbx1 ring-box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624752:7,547,702...7,560,605
Ensembl chrNW_004624752:7,546,959...7,560,668 		JBrowse link
G Rchy1 ring finger and CHY zinc finger domain containing 1 involved_in ISO (PMID:19483087) UniProt PMID:19483087 NCBI chrNW_004624730:322,448...342,454 JBrowse link
G Rnf14 ring finger protein 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624774:1,182,599...1,208,746
Ensembl chrNW_004624774:1,187,394...1,207,615 		JBrowse link
G Rnf144a ring finger protein 144A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624846:3,297,444...3,393,473
Ensembl chrNW_004624846:3,300,960...3,378,372 		JBrowse link
G Rnf144b ring finger protein 144B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:8,210,829...8,409,509
Ensembl chrNW_004624756:8,214,319...8,309,697 		JBrowse link
G Rnf180 ring finger protein 180 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18363970), (PMID:23926250) TreeGrafter
MGI		 PMID:18363970 PMID:23926250 GO_REF:0000118 NCBI chrNW_004624815:5,433,057...5,621,833
Ensembl chrNW_004624815:5,432,991...5,622,914 		JBrowse link
G Rnf19a ring finger protein 19A, RBR E3 ubiquitin protein ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624763:7,153,382...7,209,622
Ensembl chrNW_004624763:7,152,396...7,209,652 		JBrowse link
G Sh3rf1 SH3 domain containing ring finger 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624769:668,175...834,863
Ensembl chrNW_004624769:666,406...834,156 		JBrowse link
G Sh3rf2 SH3 domain containing ring finger 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624774:5,319,329...5,554,823
Ensembl chrNW_004624774:5,327,570...5,555,645 		JBrowse link
G Sirt2 sirtuin 2 involved_in ISO (MGI:5574427|PMID:24681946)
(PMID:24681946)		 UniProt PMID:24681946 MGI:5574427 NCBI chrNW_004624794:12,239,363...12,259,561
Ensembl chrNW_004624794:12,235,263...12,259,276 		JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (PMID:27457971) CACAO PMID:27457971 NCBI chrNW_004624828:5,441,973...5,449,549
Ensembl chrNW_004624828:5,442,057...5,451,520 		JBrowse link
G Socs5 suppressor of cytokine signaling 5 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624738:28,150,004...28,217,850
Ensembl chrNW_004624738:28,150,664...28,216,389 		JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in ISO (PMID:11146632) HGNC-UCL PMID:11146632 NCBI chrNW_004624913:1,491,873...1,494,249
Ensembl chrNW_004624913:1,491,991...1,494,249 		JBrowse link
G Sumo1 small ubiquitin like modifier 1 involved_in ISO (PMID:18408734) UniProt PMID:18408734 NCBI chrNW_004624765:14,205,071...14,229,864
Ensembl chrNW_004624765:14,205,051...14,229,864 		JBrowse link
G Sumo2 small ubiquitin like modifier 2 involved_in ISO (PMID:18408734) UniProt PMID:18408734 NCBI chrNW_004624801:4,998,271...5,009,492 JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:15053879) BHF-UCL PMID:15053879 NCBI chrNW_004624903:1,698,201...1,774,607 JBrowse link
G Trib1 tribbles pseudokinase 1 involved_in ISO (MGI:4457446|PMID:20410507) BHF-UCL PMID:20410507 MGI:4457446 NCBI chrNW_004624735:29,880,732...29,888,117
Ensembl chrNW_004624735:29,879,310...29,888,305 		JBrowse link
G Trib2 tribbles pseudokinase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624865:3,477,831...3,503,783
Ensembl chrNW_004624865:3,475,141...3,503,783 		JBrowse link
G Ube2v2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chrNW_004624735:7,431,955...7,464,698
Ensembl chrNW_004624735:7,432,078...7,464,672 		JBrowse link
G Usp5 ubiquitin specific peptidase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624860:3,519,106...3,532,690
Ensembl chrNW_004624860:3,519,113...3,532,687 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624915:253,240...270,440
Ensembl chrNW_004624915:253,240...270,501 		JBrowse link
G Zer1 zyg-11 related cell cycle regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:6,247,016...6,270,621
Ensembl chrNW_004624760:6,247,052...6,270,621 		JBrowse link
G Zfand2a zinc finger AN1-type containing 2A acts_upstream_of_or_within ISO (PMID:16973439) MGI PMID:16973439 NCBI chrNW_004624740:26,730,499...26,741,426
Ensembl chrNW_004624740:26,727,557...26,741,411 		JBrowse link
G Zyg11b zyg-11 family member B, cell cycle regulator involved_in ISO (PMID:31273098) UniProt PMID:31273098 NCBI chrNW_004624859:359,309...453,395
Ensembl chrNW_004624859:364,268...454,038 		JBrowse link
positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plk3 polo like kinase 3 involved_in ISO (PMID:20889502) UniProt PMID:20889502 NCBI chrNW_004624906:678,517...693,644
Ensembl chrNW_004624906:688,707...693,326 		JBrowse link
positive regulation of retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcap31 B cell receptor associated protein 31 involved_in ISO (PMID:18555783) ParkinsonsUK-UCL PMID:18555783 NCBI chrNW_004624946:398,901...420,767
Ensembl chrNW_004624946:399,227...419,642 		JBrowse link
G Edem1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in ISO (PMID:24200403)
(MGI:5563002|PMID:24200403)		 ParkinsonsUK-UCL PMID:24200403 MGI:5563002 NCBI chrNW_004624773:15,846,347...15,878,312
Ensembl chrNW_004624773:15,846,553...15,878,803 		JBrowse link
G Edem2 ER degradation enhancing alpha-mannosidase like protein 2 involved_in ISO (PMID:24200403)
(MGI:5563002|PMID:24200403)		 ParkinsonsUK-UCL PMID:24200403 MGI:5563002 NCBI chrNW_004624842:4,259,551...4,288,181
Ensembl chrNW_004624842:4,259,605...4,292,518 		JBrowse link
proteasomal ubiquitin-independent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enc1 ectodermal-neural cortex 1 involved_in ISO (PMID:19424503) UniProt PMID:19424503 NCBI chrNW_004624924:281,251...294,248
Ensembl chrNW_004624924:281,327...294,248 		JBrowse link
G Midn midnolin involved_in ISO (PMID:37616343) UniProt PMID:37616343 NCBI chrNW_004624828:7,417,157...7,427,331
Ensembl chrNW_004624828:7,415,288...7,425,608 		JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 involved_in ISO (PMID:19424503) UniProt PMID:19424503 NCBI chrNW_004624787:14,355,330...14,381,353
Ensembl chrNW_004624787:14,355,791...14,381,251 		JBrowse link
G Psme4 proteasome activator subunit 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624833:8,035,768...8,137,655
Ensembl chrNW_004624833:8,035,768...8,137,635 		JBrowse link
proteasome-mediated ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agap3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 acts_upstream_of_or_within ISO (PMID:16461359) MGI PMID:16461359 NCBI chrNW_004624800:5,486,728...5,535,691
Ensembl chrNW_004624800:5,487,200...5,535,707 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:15937334) Ensembl
MGI		 PMID:15937334 GO_REF:0000107 NCBI chrNW_004624734:507,880...525,295
Ensembl chrNW_004624734:509,368...525,295 		JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO (PMID:33854232), (PMID:33854235), (PMID:33854239) UniProt PMID:33854232 PMID:33854235 PMID:33854239 NCBI chrNW_004624767:1,967,002...2,160,102
Ensembl chrNW_004624767:1,966,898...2,160,465 		JBrowse link
G Ankrd9 ankyrin repeat domain 9 involved_in ISO (PMID:30293565) UniProt PMID:30293565 NCBI chrNW_004624734:2,011,038...2,013,055
Ensembl chrNW_004624734:2,011,085...2,012,998 		JBrowse link
G Appbp2 amyloid beta precursor protein binding protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624871:3,157,148...3,217,955
Ensembl chrNW_004624871:3,156,388...3,216,748 		JBrowse link
G Armc8 armadillo repeat containing 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:14,710,878...14,801,654
Ensembl chrNW_004624730:14,710,919...14,799,806 		JBrowse link
G Arrb1 arrestin beta 1 involved_in ISO (PMID:15878855) UniProt PMID:15878855 NCBI chrNW_004624817:1,750,448...1,828,399
Ensembl chrNW_004624817:1,750,156...1,823,309 		JBrowse link
G Arrb2 arrestin beta 2 involved_in ISO (PMID:15878855) UniProt PMID:15878855 NCBI chrNW_004624786:8,568,102...8,576,445
Ensembl chrNW_004624786:8,568,198...8,577,914 		JBrowse link
G Asb2 ankyrin repeat and SOCS box containing 2 involved_in ISO (PMID:21119685)
(MGI:5510317|PMID:23632887), (MGI:6718235|PMID:29374072)		 UniProt PMID:21119685 PMID:23632887 PMID:29374072 MGI:5510317 MGI:6718235 NCBI chrNW_004624734:10,317,932...10,352,300
Ensembl chrNW_004624734:10,316,299...10,352,515 		JBrowse link
G Atxn3 ataxin 3 involved_in ISO (MGI:5318000|PMID:21855799) UniProt PMID:21855799 MGI:5318000 NCBI chrNW_004624734:8,685,994...8,726,329 JBrowse link
G Aurka aurora kinase A involved_in
acts_upstream_of		 IEA
ISO		 (PMID:17060449) Ensembl
MGI		 PMID:17060449 GO_REF:0000107 NCBI chrNW_004624790:143,818...162,065
Ensembl chrNW_004624790:147,149...161,344 		JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISO (MGI:5780912|PMID:26692333) UniProt PMID:26692333 MGI:5780912 NCBI chrNW_004624754:24,559,483...24,571,073
Ensembl chrNW_004624754:24,559,801...24,571,073 		JBrowse link
G Bfar bifunctional apoptosis regulator involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624782:3,890,818...3,916,920
Ensembl chrNW_004624782:3,887,129...3,916,858 		JBrowse link
G Birc2 baculoviral IAP repeat containing 2 involved_in ISO (PMID:11907583) UniProt PMID:11907583 NCBI chrNW_004624878:476,460...514,637 JBrowse link
G Bmal1 basic helix-loop-helix ARNT like 1 involved_in ISO (MGI:5495336|PMID:23395176) UniProt PMID:23395176 MGI:5495336 NCBI chrNW_004624766:5,295,120...5,391,645
Ensembl chrNW_004624766:5,317,635...5,391,645 		JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase involved_in ISO (PMID:15917222) UniProt PMID:15917222 NCBI chrNW_004624831:868,417...1,065,591
Ensembl chrNW_004624831:868,563...1,060,248 		JBrowse link
G Cd2ap CD2 associated protein ISO RGD PMID:15001553 RGD:1302417 NCBI chrNW_004624754:13,420,594...13,511,672
Ensembl chrNW_004624754:13,420,603...13,511,523 		JBrowse link
G Cdc34 cell division cycle 34, ubiqiutin conjugating enzyme involved_in ISO (PMID:10373550), (PMID:20347421) UniProt PMID:10373550 PMID:20347421 NCBI chrNW_004624828:7,935,544...7,942,627
Ensembl chrNW_004624828:7,935,550...7,942,957 		JBrowse link
G Clec16a C-type lectin domain containing 16A acts_upstream_of ISO (PMID:24949970) MGI PMID:24949970 NCBI chrNW_004624824:8,174,653...8,400,760
Ensembl chrNW_004624824:8,174,610...8,400,723 		JBrowse link
G Clock clock circadian regulator involved_in ISO (MGI:5495336|PMID:23395176) UniProt PMID:23395176 MGI:5495336 NCBI chrNW_004624761:13,915,277...14,038,596
Ensembl chrNW_004624761:13,916,653...14,036,164 		JBrowse link
G Cop1 COP1 E3 ubiquitin ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624771:5,922,086...6,132,537
Ensembl chrNW_004624771:5,922,067...6,133,597 		JBrowse link
G Crbn cereblon involved_in ISO (PMID:20223979) UniProt PMID:20223979 NCBI chrNW_004624773:13,383,697...13,406,892
Ensembl chrNW_004624773:13,384,383...13,407,191 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in ISO (PMID:29374064) UniProt PMID:29374064 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G Cul1 cullin 1 involved_in ISO (PMID:10644755), (PMID:15145941), (PMID:34480022) UniProt PMID:10644755 PMID:15145941 PMID:34480022 NCBI chrNW_004624800:6,877,986...6,978,587 JBrowse link
G Cul3 cullin 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:25684205)
(PMID:20811152)
(PMID:19261606), (PMID:19782033), (PMID:20389280), (PMID:23453970), (PMID:29769719)		 UniProt
MGI		 PMID:19261606 PMID:19782033 PMID:20389280 PMID:20811152 PMID:23453970 More... NCBI chrNW_004624823:767,347...854,065
Ensembl chrNW_004624823:766,780...852,727 		JBrowse link
G Cul4a cullin 4A involved_in
acts_upstream_of_or_within		 ISO (PMID:14739464)
(PMID:16467204)		 UniProt
MGI		 PMID:14739464 PMID:16467204 NCBI chrNW_004624793:686,720...722,516
Ensembl chrNW_004624793:688,135...722,490 		JBrowse link
G Dcaf11 DDB1 and CUL4 associated factor 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624820:8,407,597...8,415,301
Ensembl chrNW_004624820:8,407,596...8,415,295 		JBrowse link
G Dcaf13 DDB1 and CUL4 associated factor 13 involved_in ISO (PMID:30111536), (PMID:31492966) UniProt PMID:30111536 PMID:31492966 NCBI chrNW_004624763:19,955,368...19,980,480
Ensembl chrNW_004624763:19,955,408...19,980,620 		JBrowse link
G Ddb1 damage specific DNA binding protein 1 involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624926:871,003...893,902
Ensembl chrNW_004624926:871,000...897,777 		JBrowse link
G Ddit3 DNA damage inducible transcript 3 involved_in ISO (PMID:17872950) UniProt PMID:17872950 NCBI chrNW_004624802:10,437,998...10,443,278 JBrowse link
G Derl1 derlin 1 involved_in ISO (MGI:5780912|PMID:26692333) UniProt PMID:26692333 MGI:5780912 NCBI chrNW_004624735:31,832,711...31,857,687
Ensembl chrNW_004624735:31,832,701...31,857,687 		JBrowse link
G Dnajb2 DnaJ heat shock protein family (Hsp40) member B2 involved_in ISO (PMID:21625540) UniProt PMID:21625540 NCBI chrNW_004624823:5,730,553...5,737,668
Ensembl chrNW_004624823:5,730,386...5,738,459 		JBrowse link
G Dtl denticleless E3 ubiquitin protein ligase homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624771:17,612,264...17,660,772
Ensembl chrNW_004624771:17,612,284...17,662,405 		JBrowse link
G Dtx4 deltex E3 ubiquitin ligase 4 involved_in ISO (PMID:27692986) UniProt PMID:27692986 NCBI chrNW_004624864:1,475,383...1,502,047
Ensembl chrNW_004624864:1,478,059...1,498,066 		JBrowse link
G Edem3 ER degradation enhancing alpha-mannosidase like protein 3 acts_upstream_of_or_within ISO (PMID:16431915) MGI PMID:16431915 NCBI chrNW_004624814:8,839,016...8,924,161
Ensembl chrNW_004624814:8,838,997...8,922,936 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO (PMID:24914213) MGI PMID:24914213 NCBI chrNW_004624753:8,715,898...8,805,728
Ensembl chrNW_004624753:8,715,898...8,804,194 		JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624815:9,054,576...9,135,136
Ensembl chrNW_004624815:9,054,651...9,134,286 		JBrowse link
G Faf2 Fas associated factor family member 2 involved_in ISO (MGI:5780912|PMID:26692333) UniProt PMID:26692333 MGI:5780912 NCBI chrNW_004624733:13,608,993...13,674,200
Ensembl chrNW_004624733:13,608,360...13,674,175 		JBrowse link
G Fbxl17 F-box and leucine rich repeat protein 17 involved_in ISO (PMID:30190310) UniProt PMID:30190310 NCBI chrNW_004624743:25,787,012...26,278,813
Ensembl chrNW_004624743:25,789,733...26,278,728 		JBrowse link
G Fbxl19 F-box and leucine rich repeat protein 19 acts_upstream_of_or_within
involved_in		 ISO (PMID:22660580)
(PMID:23512198)		 MGI
UniProt		 PMID:22660580 PMID:23512198 NCBI chrNW_004624782:14,000,230...14,026,749 JBrowse link
G Fbxl22 F-box and leucine rich repeat protein 22 acts_upstream_of_or_within ISO (PMID:22972877) MGI PMID:22972877 NCBI chrNW_004624781:8,910,778...8,915,393
Ensembl chrNW_004624781:8,910,857...8,915,069 		JBrowse link
G Fbxl3 F-box and leucine rich repeat protein 3 involved_in ISO (MGI:3715674|PMID:17462724) UniProt PMID:17462724 MGI:3715674 NCBI chrNW_004624751:23,374,622...23,391,535
Ensembl chrNW_004624751:23,374,702...23,398,727 		JBrowse link
G Fbxo22 F-box protein 22 acts_upstream_of ISO (PMID:19319192) MGI PMID:19319192 NCBI chrNW_004624894:2,158,065...2,177,945
Ensembl chrNW_004624894:2,158,065...2,178,431 		JBrowse link
G Fbxo45 F-box protein 45 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:61,667,177...61,684,162 JBrowse link
G Fbxo7 F-box protein 7 involved_in ISO (PMID:36646384) UniProt PMID:36646384 NCBI chrNW_004624750:1,977,666...1,997,408
Ensembl chrNW_004624750:1,977,761...1,997,231 		JBrowse link
G Fbxo9 F-box protein 9 involved_in ISO (PMID:34480022) UniProt PMID:34480022 NCBI chrNW_004624850:287,585...335,939
Ensembl chrNW_004624850:287,586...336,827 		JBrowse link
G Fbxw11 F-box and WD repeat domain containing 11 involved_in ISO (PMID:10644755), (PMID:20347421) UniProt PMID:10644755 PMID:20347421 NCBI chrNW_004624733:17,985,546...18,121,398 JBrowse link
G Fbxw5 F-box and WD repeat domain containing 5 involved_in ISO (PMID:18381890) UniProt PMID:18381890 NCBI chrNW_004624760:939,896...943,636
Ensembl chrNW_004624760:940,256...943,644 		JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in ISO (PMID:25897075), (PMID:35395208)
(PMID:15103331)		 ARUK-UCL
UniProt		 PMID:15103331 PMID:25897075 PMID:35395208 NCBI chrNW_004624858:3,778,842...3,974,351
Ensembl chrNW_004624858:3,775,795...3,873,336 		JBrowse link
G Fem1b fem-1 homolog B involved_in ISO (PMID:24076122) UniProt PMID:24076122 NCBI chrNW_004624781:4,814,030...4,827,274
Ensembl chrNW_004624781:4,817,090...4,827,837 		JBrowse link
G Fem1c fem-1 homolog C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:6,380,506...6,413,006 JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) MGI PMID:23707074 NCBI chrNW_004624885:2,315,371...2,321,327
Ensembl chrNW_004624885:2,315,142...2,321,327 		JBrowse link
G Gid4 GID complex subunit 4 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624849:3,385,312...3,408,842
Ensembl chrNW_004624849:3,386,101...3,408,924 		JBrowse link
G Gid8 GID complex subunit 8 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:28,700,817...28,707,527
Ensembl chrNW_004624741:28,701,018...28,707,527 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in ISO (MGI:5514334|PMID:16543145) UniProt PMID:16543145 MGI:5514334 NCBI chrNW_004624907:511,919...522,106
Ensembl chrNW_004624907:511,889...522,168 		JBrowse link
G Hectd1 HECT domain E3 ubiquitin protein ligase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624820:1,097,323...1,196,556
Ensembl chrNW_004624820:1,097,463...1,196,499 		JBrowse link
G Hectd3 HECT domain E3 ubiquitin protein ligase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624906:902,668...911,099
Ensembl chrNW_004624906:902,344...911,575 		JBrowse link
G Itch itchy E3 ubiquitin protein ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624842:4,840,848...4,977,785
Ensembl chrNW_004624842:4,842,419...4,935,699 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in ISO (PMID:18397884) UniProt PMID:18397884 NCBI chrNW_004624767:20,668,759...20,675,367
Ensembl chrNW_004624767:20,666,763...20,675,164 		JBrowse link
G Kcmf1 potassium channel modulatory factor 1 involved_in ISO (PMID:37891180), (PMID:38297121) UniProt PMID:37891180 PMID:38297121 NCBI chrNW_004624749:18,017,862...18,098,444
Ensembl chrNW_004624749:18,017,528...18,099,020 		JBrowse link
G Kctd10 potassium channel tetramerization domain containing 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:10,951,870...10,978,045
Ensembl chrNW_004624747:10,951,883...10,979,210 		JBrowse link
G Kctd17 potassium channel tetramerization domain containing 17 involved_in ISO (PMID:25270598) UniProt PMID:25270598 NCBI chrNW_004624752:10,728,872...10,738,429
Ensembl chrNW_004624752:10,729,344...10,738,428 		JBrowse link
G Kctd2 potassium channel tetramerization domain containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624801:4,863,312...4,877,690
Ensembl chrNW_004624801:4,863,232...4,878,504 		JBrowse link
G Kctd5 potassium channel tetramerization domain containing 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624824:383,389...411,824
Ensembl chrNW_004624824:383,434...410,257 		JBrowse link
G Kif14 kinesin family member 14 involved_in ISO (PMID:24854087) UniProt PMID:24854087 NCBI chrNW_004624807:10,093,518...10,144,484
Ensembl chrNW_004624807:10,092,934...10,143,399 		JBrowse link
G Klhdc2 kelch domain containing 2 involved_in ISO (PMID:26138980) UniProt PMID:26138980 NCBI chrNW_004624731:18,935,841...18,973,879
Ensembl chrNW_004624731:18,962,888...18,974,096 		JBrowse link
G Klhdc3 kelch domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:16,479,389...16,485,573
Ensembl chrNW_004624754:16,479,389...16,483,824 		JBrowse link
G Klhl20 kelch like family member 20 involved_in ISO (PMID:20389280) UniProt PMID:20389280 NCBI chrNW_004624771:8,068,522...8,117,329 JBrowse link
G Klhl22 kelch like family member 22 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624945:409,093...446,619
Ensembl chrNW_004624945:408,999...441,975 		JBrowse link
G Klhl3 kelch like family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:9,299,217...9,413,390
Ensembl chrNW_004624733:9,299,229...9,413,469 		JBrowse link
G Klhl40 kelch like family member 40 acts_upstream_of ISO (PMID:24960163) MGI PMID:24960163 NCBI chrNW_004624730:77,004,787...77,012,643
Ensembl chrNW_004624730:77,007,063...77,011,413 		JBrowse link
G Klhl42 kelch like family member 42 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624935:181,511...254,738
Ensembl chrNW_004624935:186,464...254,951 		JBrowse link
G LOC101698265 ubiquitin-conjugating enzyme E2 K-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624912:905,310...906,078 JBrowse link
G LOC101710854 BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624782:13,293,261...13,308,610
Ensembl chrNW_004624782:13,293,421...13,308,102 		JBrowse link
G Maea macrophage erythroblast attacher, E3 ubiquitin ligase involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624755:25,934,569...25,968,726
Ensembl chrNW_004624755:25,934,569...25,968,706 		JBrowse link
G Marchf6 membrane associated ring-CH-type finger 6 involved_in ISO (PMID:24449766) UniProt PMID:24449766 NCBI chrNW_004624751:7,715,065...7,781,320
Ensembl chrNW_004624751:7,715,007...7,780,460 		JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of ISO (PMID:23695157) MGI PMID:23695157 NCBI chrNW_004624923:952,782...1,062,391 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO (PMID:19386237) MGI PMID:19386237 NCBI chrNW_004624795:1,553,582...1,558,110
Ensembl chrNW_004624795:1,553,037...1,558,197 		JBrowse link
G Nedd4l NEDD4 like E3 ubiquitin protein ligase involved_in ISO (PMID:21463633) BHF-UCL PMID:21463633 NCBI chrNW_004624792:3,553,185...3,903,288
Ensembl chrNW_004624792:3,553,004...3,902,468 		JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 involved_in ISO (PMID:15983046) UniProt PMID:15983046 NCBI chrNW_004624787:14,355,330...14,381,353
Ensembl chrNW_004624787:14,355,791...14,381,251 		JBrowse link
G Nhlrc1 NHL repeat containing E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:15930137)
(PMID:24914213)		 UniProt
MGI		 PMID:15930137 PMID:24914213 NCBI chrNW_004624756:8,558,470...8,560,610 JBrowse link
G Nhlrc3 NHL repeat containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624920:1,973,009...1,986,166
Ensembl chrNW_004624920:1,973,022...1,985,034 		JBrowse link
G Nsfl1c NSFL1 cofactor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:2,746,853...2,774,038
Ensembl chrNW_004624741:2,748,796...2,774,119 		JBrowse link
G Otud5 OTU deubiquitinase 5 acts_upstream_of_or_within ISO (PMID:25470037) MGI PMID:25470037 NCBI chrNW_004624893:702,895...736,623 JBrowse link
G Pbk PDZ binding kinase involved_in
acts_upstream_of		 IEA
ISO		 (PMID:21715333) Ensembl
MGI		 PMID:21715333 GO_REF:0000107 NCBI chrNW_004624758:22,603,076...22,625,817
Ensembl chrNW_004624758:22,603,039...22,625,763 		JBrowse link
G Pcbp2 poly(rC) binding protein 2 involved_in ISO (PMID:19881509) UniProt PMID:19881509 NCBI chrNW_004624904:1,553,253...1,579,212
Ensembl chrNW_004624904:1,555,635...1,578,982 		JBrowse link
G Pcnp PEST proteolytic signal containing nuclear protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624789:15,429,698...15,450,352
Ensembl chrNW_004624789:15,429,793...15,448,422 		JBrowse link
G Peli1 pellino E3 ubiquitin protein ligase 1 involved_in ISO (PMID:29883609) UniProt PMID:29883609 NCBI chrNW_004624762:9,328,275...9,382,996
Ensembl chrNW_004624762:9,328,109...9,386,067 		JBrowse link
G Pja2 praja ring finger ubiquitin ligase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624743:27,251,937...27,331,213
Ensembl chrNW_004624743:27,254,436...27,301,934 		JBrowse link
G Plaa phospholipase A2 activating protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624736:31,127,955...31,169,680
Ensembl chrNW_004624736:31,127,955...31,169,739 		JBrowse link
G Pml PML nuclear body scaffold involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624781:464,858...498,146
Ensembl chrNW_004624781:464,658...497,775 		JBrowse link
G Pmp22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (PMID:15748170) MGI PMID:15748170 NCBI chrNW_004624877:3,293,980...3,328,337
Ensembl chrNW_004624877:3,292,244...3,328,660 		JBrowse link
G Ppp2cb protein phosphatase 2 catalytic subunit beta acts_upstream_of_or_within ISO (PMID:16717086) MGI PMID:16717086 NCBI chrNW_004624780:13,332,636...13,369,301 JBrowse link
G Ppp2r5c protein phosphatase 2 regulatory subunit B'gamma acts_upstream_of_or_within ISO (PMID:16717086) MGI PMID:16717086 NCBI chrNW_004624734:2,337,649...2,471,319
Ensembl chrNW_004624734:2,335,243...2,470,811 		JBrowse link
G Prame PRAME nuclear receptor transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:8,914,226...8,927,648
Ensembl chrNW_004624747:8,913,531...8,918,222 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:11439185), (PMID:21376232) ParkinsonsUK-UCL PMID:11439185 PMID:21376232 NCBI chrNW_004624855:430,148...1,992,121
Ensembl chrNW_004624855:430,260...1,989,747 		JBrowse link
G Psma5 proteasome 20S subunit alpha 5 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624772:5,127,271...5,148,928
Ensembl chrNW_004624772:5,122,928...5,148,911 		JBrowse link
G Psmb3 proteasome 20S subunit beta 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624795:3,932,534...3,939,411
Ensembl chrNW_004624795:3,931,923...3,939,305 		JBrowse link
G Psmb5 proteasome 20S subunit beta 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15198663) Ensembl
MGI		 PMID:15198663 GO_REF:0000107 NCBI chrNW_004624820:9,506,119...9,513,034
Ensembl chrNW_004624820:9,505,725...9,513,034 		JBrowse link
G Psmc1 proteasome 26S subunit, ATPase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624734:12,153,919...12,174,650 JBrowse link
G Psmc2 proteasome 26S subunit, ATPase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624739:26,001,871...26,015,633
Ensembl chrNW_004624739:26,001,871...26,016,040 		JBrowse link
G Psmc3 proteasome 26S subunit, ATPase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:1,361,970...1,367,282
Ensembl chrNW_004624767:1,362,132...1,372,083 		JBrowse link
G Psmc4 proteasome 26S subunit, ATPase 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624925:119,837...127,678
Ensembl chrNW_004624925:119,777...130,723 		JBrowse link
G Psmc5 proteasome 26S subunit, ATPase 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624849:1,349,787...1,354,776
Ensembl chrNW_004624849:1,349,720...1,354,775 		JBrowse link
G Psmc6 proteasome 26S subunit, ATPase 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:16,386,194...16,414,554
Ensembl chrNW_004624731:16,386,194...16,414,485 		JBrowse link
G Psmd1 proteasome 26S subunit, non-ATPase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624843:4,369,592...4,464,285
Ensembl chrNW_004624843:4,369,590...4,464,287 		JBrowse link
G Psmd14 proteasome 26S subunit, non-ATPase 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624732:4,057,519...4,150,178
Ensembl chrNW_004624732:4,057,810...4,150,209 		JBrowse link
G Psmd2 proteasome 26S subunit ubiquitin receptor, non-ATPase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:72,286,625...72,297,415
Ensembl chrNW_004624730:72,286,324...72,297,465 		JBrowse link
G Psmd4 proteasome 26S subunit ubiquitin receptor, non-ATPase 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624772:18,600,021...18,609,887
Ensembl chrNW_004624772:18,600,021...18,610,014 		JBrowse link
G Psmd6 proteasome 26S subunit, non-ATPase 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624888:1,883,365...1,903,011
Ensembl chrNW_004624888:1,883,445...1,903,011 		JBrowse link
G Psmd7 proteasome 26S subunit, non-ATPase 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624746:16,470,999...16,481,791
Ensembl chrNW_004624746:16,470,221...16,482,047 		JBrowse link
G Psmd8 proteasome 26S subunit, non-ATPase 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624794:11,837,914...11,845,380
Ensembl chrNW_004624794:11,837,095...11,845,363 		JBrowse link
G Psmf1 proteasome inhibitor subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624741:2,402,616...2,443,461
Ensembl chrNW_004624741:2,409,187...2,443,071 		JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624901:515,761...522,845
Ensembl chrNW_004624901:516,855...523,337 		JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624758:4,168,341...4,211,893
Ensembl chrNW_004624758:4,167,215...4,211,487 		JBrowse link
G Rbck1 RANBP2-type and C3HC4-type zinc finger containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:1,503,017...1,523,542
Ensembl chrNW_004624741:1,502,942...1,523,675 		JBrowse link
G Rbx1 ring-box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624752:7,547,702...7,560,605
Ensembl chrNW_004624752:7,546,959...7,560,668 		JBrowse link
G Rffl ring finger and FYVE like domain containing E3 ubiquitin protein ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624875:2,896,888...2,964,838
Ensembl chrNW_004624875:2,897,832...2,964,866 		JBrowse link
G Rhobtb3 Rho related BTB domain containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624743:14,361,573...14,424,063 JBrowse link
G Rmnd5a required for meiotic nuclear division 5 homolog A involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624749:16,574,317...16,626,109
Ensembl chrNW_004624749:16,573,790...16,626,096 		JBrowse link
G Rmnd5b required for meiotic nuclear division 5 homolog B involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624733:41,357,840...41,371,203
Ensembl chrNW_004624733:41,358,910...41,375,513 		JBrowse link
G Rnf122 ring finger protein 122 involved_in ISO (PMID:20553626) UniProt PMID:20553626 NCBI chrNW_004624780:10,391,328...10,415,351
Ensembl chrNW_004624780:10,391,180...10,408,755 		JBrowse link
G Rnf126 ring finger protein 126 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624828:7,856,822...7,865,644
Ensembl chrNW_004624828:7,856,470...7,869,926 		JBrowse link
G Rnf170 ring finger protein 170 acts_upstream_of_or_within ISO (PMID:31076723) MGI PMID:31076723 NCBI chrNW_004624780:67,160...127,620
Ensembl chrNW_004624780:66,049...126,383 		JBrowse link
G Rnf186 ring finger protein 186 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624764:4,897,234...4,898,470 JBrowse link
G Rnf187 ring finger protein 187 involved_in ISO (PMID:20852630) UniProt PMID:20852630 NCBI chrNW_004624937:1,156,602...1,162,288
Ensembl chrNW_004624937:1,156,666...1,162,288 		JBrowse link
G Rnf216 ring finger protein 216 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624740:27,861,094...28,024,619
Ensembl chrNW_004624740:27,885,778...28,024,710 		JBrowse link
G Rnf34 ring finger protein 34 involved_in ISO (PMID:15069192)
(MGI:5582154|PMID:22064484)
(PMID:22064484), (PMID:25012219)		 UniProt PMID:15069192 PMID:22064484 PMID:25012219 MGI:5582154 NCBI chrNW_004624747:21,904,652...21,920,579
Ensembl chrNW_004624747:21,904,667...21,920,778 		JBrowse link
G Rnf4 ring finger protein 4 involved_in ISO (PMID:18408734), (PMID:20212317), (PMID:20943951) UniProt PMID:18408734 PMID:20212317 PMID:20943951 NCBI chrNW_004624755:25,139,637...25,163,586
Ensembl chrNW_004624755:25,141,567...25,153,942 		JBrowse link
G Senp1 SUMO specific peptidase 1 acts_upstream_of ISO (PMID:17981124) MGI PMID:17981124 NCBI chrNW_004624816:4,173,321...4,231,711
Ensembl chrNW_004624816:4,179,890...4,232,312 		JBrowse link
G Sh3bgrl SH3 domain binding glutamate rich protein like involved_in ISO (PMID:34331014) UniProt PMID:34331014 NCBI chrNW_004624852:7,033,344...7,113,039
Ensembl chrNW_004624852:7,033,344...7,113,021 		JBrowse link
G Sharpin SHANK associated RH domain interactor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:12,719,196...12,723,578
Ensembl chrNW_004624735:12,719,762...12,723,348 		JBrowse link
G Siah1 siah E3 ubiquitin protein ligase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624914:2,166,958...2,193,357 JBrowse link
G Siah2 siah E3 ubiquitin protein ligase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:28,159,096...28,178,832
Ensembl chrNW_004624730:28,158,750...28,178,810 		JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (PMID:21841822) UniProt PMID:21841822 NCBI chrNW_004624754:2,304,476...2,332,705
Ensembl chrNW_004624754:2,304,634...2,330,946 		JBrowse link
G Sirt2 sirtuin 2 involved_in ISO (PMID:21841822) UniProt PMID:21841822 NCBI chrNW_004624794:12,239,363...12,259,561
Ensembl chrNW_004624794:12,235,263...12,259,276 		JBrowse link
G Skp1 S-phase kinase associated protein 1 involved_in ISO (PMID:15145941), (PMID:34480022) UniProt PMID:15145941 PMID:34480022 NCBI chrNW_004624733:38,051,280...38,069,648 JBrowse link
G Skp2 S-phase kinase associated protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:18,796,055...18,858,692
Ensembl chrNW_004624759:18,830,323...18,858,712 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624740:32,480,138...32,615,436
Ensembl chrNW_004624740:32,483,092...32,615,260 		JBrowse link
G Smurf2 SMAD specific E3 ubiquitin protein ligase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624870:243,381...365,543
Ensembl chrNW_004624870:246,260...366,033 		JBrowse link
G Spop speckle type BTB/POZ protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20811152) TreeGrafter
MGI		 PMID:20811152 GO_REF:0000118 NCBI chrNW_004624795:5,698,131...5,769,209 JBrowse link
G Spopl speckle type BTB/POZ protein like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624732:38,214,876...38,297,363
Ensembl chrNW_004624732:38,277,686...38,293,970 		JBrowse link
G Spsb1 splA/ryanodine receptor domain and SOCS box containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624818:2,965,222...3,014,544
Ensembl chrNW_004624818:2,964,984...2,983,433 		JBrowse link
G Spsb2 splA/ryanodine receptor domain and SOCS box containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624860:3,537,255...3,539,519
Ensembl chrNW_004624860:3,536,610...3,539,106 		JBrowse link
G Spsb3 splA/ryanodine receptor domain and SOCS box containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624913:469,732...475,767
Ensembl chrNW_004624913:470,002...475,765 		JBrowse link
G Spsb4 splA/ryanodine receptor domain and SOCS box containing 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:17,692,124...17,774,321
Ensembl chrNW_004624730:17,692,959...17,774,497 		JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624913:1,491,873...1,494,249
Ensembl chrNW_004624913:1,491,991...1,494,249 		JBrowse link
G Tbl1x transducin beta like 1 X-linked acts_upstream_of_or_within ISO (PMID:14980219) MGI PMID:14980219 NCBI chrNW_004624834:7,086,348...7,281,974 JBrowse link
G Tbl1xr1 TBL1X/Y related 1 acts_upstream_of_or_within ISO (PMID:14980219) MGI PMID:14980219 NCBI chrNW_004624730:54,835,624...55,013,474
Ensembl chrNW_004624730:54,835,624...54,884,835 		JBrowse link
G Tbx21 T-box transcription factor 21 involved_in ISO (MGI:5543347|PMID:23616576) UniProt PMID:23616576 MGI:5543347 NCBI chrNW_004624795:4,442,188...4,453,544
Ensembl chrNW_004624795:4,442,188...4,453,143 		JBrowse link
G Tnfaip1 TNF alpha induced protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624786:939,619...952,698
Ensembl chrNW_004624786:939,605...952,675 		JBrowse link
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase involved_in ISO (PMID:18077445) UniProt PMID:18077445 NCBI chrNW_004624736:37,209,709...37,221,921
Ensembl chrNW_004624736:37,210,291...37,221,747 		JBrowse link
G Trim13 tripartite motif containing 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624748:4,683,518...4,765,944 JBrowse link
G Trim2 tripartite motif containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624858:4,509,893...4,683,241
Ensembl chrNW_004624858:4,554,681...4,667,312 		JBrowse link
G Trim26 tripartite motif containing 26 involved_in ISO (PMID:29203640) UniProt PMID:29203640 NCBI chrNW_004624754:25,238,992...25,258,454
Ensembl chrNW_004624754:25,230,073...25,259,980 		JBrowse link
G Trim3 tripartite motif containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624817:7,965,976...7,991,426
Ensembl chrNW_004624817:7,965,976...7,991,411 		JBrowse link
G Trim45 tripartite motif containing 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624772:12,802,710...12,815,432
Ensembl chrNW_004624772:12,806,174...12,815,456 		JBrowse link
G Trim63 tripartite motif containing 63 acts_upstream_of_or_within ISO (PMID:15601779) MGI PMID:15601779 NCBI chrNW_004624764:10,126,345...10,139,829
Ensembl chrNW_004624764:10,128,751...10,139,687 		JBrowse link
G Trim72 tripartite motif containing 72 acts_upstream_of_or_within ISO (PMID:23965929) MGI PMID:23965929 NCBI chrNW_004624782:14,269,073...14,274,767
Ensembl chrNW_004624782:14,269,160...14,274,625 		JBrowse link
G Trim9 tripartite motif containing 9 involved_in ISO (PMID:20085810) UniProt PMID:20085810 NCBI chrNW_004624731:17,851,106...17,969,461
Ensembl chrNW_004624731:17,851,116...17,969,453 		JBrowse link
G Trip12 thyroid hormone receptor interactor 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624843:3,589,068...3,723,115
Ensembl chrNW_004624843:3,586,734...3,722,237 		JBrowse link
G Ube2a ubiquitin conjugating enzyme E2 A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624895:3,544,410...3,553,981 JBrowse link
G Ube2b ubiquitin conjugating enzyme E2 B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:37,890,350...37,907,846
Ensembl chrNW_004624733:37,891,280...37,906,066 		JBrowse link
G Ube2d1 ubiquitin conjugating enzyme E2 D1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624791:5,214,261...5,248,138
Ensembl chrNW_004624791:5,213,967...5,248,129 		JBrowse link
G Ube2d3 ubiquitin conjugating enzyme E2 D3 involved_in
acts_upstream_of_or_within		 ISO (PMID:20347421)
(PMID:15601779)		 UniProt
MGI		 PMID:15601779 PMID:20347421 NCBI chrNW_004624830:5,213,464...5,240,809 JBrowse link
G Ube2h ubiquitin conjugating enzyme E2 H acts_upstream_of_or_within ISO (PMID:23965929) MGI PMID:23965929 NCBI chrNW_004624783:6,292,784...6,432,083
Ensembl chrNW_004624783:6,292,684...6,432,208 		JBrowse link
G Ube2i ubiquitin conjugating enzyme E2 I ISO RGD PMID:9013644 RGD:730030 NCBI chrNW_004624913:2,025,241...2,041,394
Ensembl chrNW_004624913:2,025,528...2,041,690 		JBrowse link
G Ube2n ubiquitin conjugating enzyme E2 N involved_in ISO (PMID:35927303) UniProt PMID:35927303 NCBI chrNW_004624750:13,432,657...13,468,797
Ensembl chrNW_004624750:13,432,661...13,457,776 		JBrowse link
G Ube2w ubiquitin conjugating enzyme E2 W involved_in ISO (MGI:5318000|PMID:21855799)
(PMID:35927303)		 UniProt PMID:21855799 PMID:35927303 MGI:5318000 NCBI chrNW_004624744:17,314,249...17,485,193
Ensembl chrNW_004624744:17,328,604...17,407,817 		JBrowse link
G Ube4b ubiquitination factor E4B acts_upstream_of_or_within ISO (PMID:23509263) MGI PMID:23509263 NCBI chrNW_004624818:2,448,809...2,561,947
Ensembl chrNW_004624818:2,447,368...2,562,128 		JBrowse link
G Ubr1 ubiquitin protein ligase E3 component n-recognin 1 involved_in ISO (PMID:15548684) UniProt PMID:15548684 NCBI chrNW_004624804:10,035,122...10,225,640
Ensembl chrNW_004624804:10,036,225...10,225,571 		JBrowse link
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 involved_in ISO (PMID:15548684) UniProt PMID:15548684 NCBI chrNW_004624754:16,701,950...16,798,293
Ensembl chrNW_004624754:16,701,331...16,798,897 		JBrowse link
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISO (PMID:37891180), (PMID:38297121) UniProt PMID:37891180 PMID:38297121 NCBI chrNW_004624764:4,223,784...4,358,923
Ensembl chrNW_004624764:4,223,784...4,358,885 		JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:29378950) UniProt PMID:29378950 NCBI chrNW_004624763:19,414,582...19,530,539
Ensembl chrNW_004624763:19,414,549...19,530,517 		JBrowse link
G Ubxn11 UBX domain protein 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:10,318,744...10,341,269
Ensembl chrNW_004624764:10,318,040...10,337,959 		JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624738:6,313,925...6,341,999
Ensembl chrNW_004624738:6,323,404...6,341,996 		JBrowse link
G Ubxn2b UBX domain protein 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624744:33,676,900...33,725,388
Ensembl chrNW_004624744:33,696,129...33,725,383 		JBrowse link
G Ubxn7 UBX domain protein 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:61,505,225...61,571,945
Ensembl chrNW_004624730:61,507,095...61,571,931 		JBrowse link
G Usp14 ubiquitin specific peptidase 14 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624770:10,741,247...10,769,837 JBrowse link
G Usp25 ubiquitin specific peptidase 25 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624745:4,170,328...4,306,604
Ensembl chrNW_004624745:4,169,938...4,305,122 		JBrowse link
G Usp44 ubiquitin specific peptidase 44 involved_in ISO (MGI:5448515|PMID:21853124) UniProt PMID:21853124 MGI:5448515 NCBI chrNW_004624750:11,697,919...11,725,421
Ensembl chrNW_004624750:11,710,218...11,724,529 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624915:253,240...270,440
Ensembl chrNW_004624915:253,240...270,501 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor involved_in ISO (PMID:34290272) UniProt PMID:34290272 NCBI chrNW_004624731:5,350,912...5,359,286 JBrowse link
G Wdr26 WD repeat domain 26 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624835:6,000,566...6,041,917
Ensembl chrNW_004624835:6,005,173...6,041,915 		JBrowse link
G Wwp1 WW domain containing E3 ubiquitin protein ligase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624744:5,329,535...5,435,819 JBrowse link
G Wwp2 WW domain containing E3 ubiquitin protein ligase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624746:16,501,320...16,661,423
Ensembl chrNW_004624746:16,501,324...16,654,691 		JBrowse link
G Zfand2a zinc finger AN1-type containing 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624740:26,730,499...26,741,426
Ensembl chrNW_004624740:26,727,557...26,741,411 		JBrowse link
G Zfand2b zinc finger AN1-type containing 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624823:5,805,147...5,808,500
Ensembl chrNW_004624823:5,805,147...5,808,485 		JBrowse link
G Znrf1 zinc and ring finger 1 involved_in ISO (MGI:5306704|PMID:22057101) UniProt PMID:22057101 MGI:5306704 NCBI chrNW_004624746:11,847,627...11,954,637
Ensembl chrNW_004624746:11,848,425...11,954,784 		JBrowse link
G Znrf4 zinc and ring finger 4 involved_in ISO (PMID:28656966) UniProt PMID:28656966 NCBI chrNW_004624828:4,633,434...4,635,366 JBrowse link
G Zswim8 zinc finger SWIM-type containing 8 involved_in ISO (PMID:33184234) UniProt PMID:33184234 NCBI chrNW_004624754:7,302,177...7,316,308
Ensembl chrNW_004624754:7,302,249...7,316,108 		JBrowse link
regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:29,069,995...29,081,085
Ensembl chrNW_004624746:29,068,350...29,081,085 		JBrowse link
G Usp19 ubiquitin specific peptidase 19 involved_in ISO (PMID:25088257) ParkinsonsUK-UCL PMID:25088257 NCBI chrNW_004624730:3,134,419...3,145,512
Ensembl chrNW_004624730:3,133,595...3,146,221 		JBrowse link
regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E involved_in ISO (PMID:28111074) UniProt PMID:28111074 NCBI chrNW_004624907:1,752,322...1,755,308 JBrowse link
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (PMID:19103752) MGI PMID:19103752 NCBI chrNW_004624831:868,417...1,065,591
Ensembl chrNW_004624831:868,563...1,060,248 		JBrowse link
G Dlgap1 DLG associated protein 1 involved_in ISO PMID:15496675 BHF-UCL PMID:15496675 RGD:8553458 NCBI chrNW_004624770:13,543,893...13,841,213
Ensembl chrNW_004624770:13,542,680...13,841,352 		JBrowse link
G Dnaaf4 dynein axonemal assembly factor 4 involved_in ISO (PMID:19423554) UniProt PMID:19423554 NCBI chrNW_004624731:6,215,798...6,270,210
Ensembl chrNW_004624731:6,215,737...6,241,793 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO (PMID:27107699) MGI PMID:27107699 NCBI chrNW_004624753:8,715,898...8,805,728
Ensembl chrNW_004624753:8,715,898...8,804,194 		JBrowse link
G Gpx1 glutathione peroxidase 1 involved_in ISO (PMID:12751788) BHF-UCL PMID:12751788 NCBI chrNW_004624730:3,313,773...3,314,870
Ensembl chrNW_004624730:3,313,972...3,314,626 		JBrowse link
G Nfe2l1 NFE2 like bZIP transcription factor 1 acts_upstream_of_or_within ISO (PMID:27920251)
(PMID:29400713)		 MGI PMID:27920251 PMID:29400713 NCBI chrNW_004624795:4,652,221...4,663,341
Ensembl chrNW_004624795:4,652,637...4,662,454 		JBrowse link
G Nudt15 nudix hydrolase 15 involved_in ISO (PMID:19419956) UniProt PMID:19419956 NCBI chrNW_004624748:6,807,667...6,824,477
Ensembl chrNW_004624748:6,804,740...6,823,757 		JBrowse link
G Pithd1 PITH domain containing 1 acts_upstream_of_or_within ISO (PMID:31915251) MGI PMID:31915251 NCBI chrNW_004624764:8,325,680...8,337,185
Ensembl chrNW_004624764:8,325,683...8,337,185 		JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO (PMID:23001567) MGI PMID:23001567 NCBI chrNW_004624913:118,520...166,939
Ensembl chrNW_004624913:118,733...165,859 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha involved_in ISO (PMID:17565987) UniProt PMID:17565987 NCBI chrNW_004624901:1,319,426...1,336,848
Ensembl chrNW_004624901:1,319,062...1,336,744 		JBrowse link
G Psmd14 proteasome 26S subunit, non-ATPase 14 involved_in ISO (PMID:18162577) UniProt PMID:18162577 NCBI chrNW_004624732:4,057,519...4,150,178
Ensembl chrNW_004624732:4,057,810...4,150,209 		JBrowse link
G Psme1 proteasome activator subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624820:8,397,344...8,400,273
Ensembl chrNW_004624820:8,397,344...8,400,285 		JBrowse link
G Psme2 proteasome activator subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624820:8,389,348...8,393,498
Ensembl chrNW_004624820:8,389,286...8,393,498 		JBrowse link
G Psme3 proteasome activator subunit 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:1,373,214...1,378,481
Ensembl chrNW_004624795:1,372,032...1,378,382 		JBrowse link
G Rhbdf1 rhomboid 5 homolog 1 involved_in ISO (PMID:21439629) UniProt PMID:21439629 NCBI chrNW_004624913:937,484...954,458
Ensembl chrNW_004624913:937,484...954,428 		JBrowse link
G Tmf1 TATA element modulatory factor 1 involved_in ISO (MGI:5488886|PMID:16792503) UniProt PMID:16792503 MGI:5488886 NCBI chrNW_004624773:3,587,753...3,618,089 JBrowse link
G Ubb ubiquitin B acts_upstream_of_or_within ISO (PMID:17571083) MGI PMID:17571083 NCBI chrNW_004624877:4,050,188...4,051,849
Ensembl chrNW_004624877:4,050,188...4,051,768 		JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in ISO (PMID:18162577) UniProt PMID:18162577 NCBI chrNW_004624814:529,100...568,387
Ensembl chrNW_004624814:529,084...567,666 		JBrowse link
G Usp14 ubiquitin specific peptidase 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624770:10,741,247...10,769,837 JBrowse link
G Usp25 ubiquitin specific peptidase 25 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624745:4,170,328...4,306,604
Ensembl chrNW_004624745:4,169,938...4,305,122 		JBrowse link
regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Araf A-Raf proto-oncogene, serine/threonine kinase involved_in ISO (PMID:22609986) UniProt PMID:22609986 NCBI chrNW_004624978:99,605...110,645
Ensembl chrNW_004624978:100,505...110,646 		JBrowse link
G Commd1 copper metabolism domain containing 1 involved_in ISO (PMID:17183367) UniProt PMID:17183367 NCBI chrNW_004624762:11,302,730...11,407,074 JBrowse link
G Dda1 DET1 and DDB1 associated 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624908:631,429...637,158
Ensembl chrNW_004624908:631,432...637,104 		JBrowse link
G Desi1 desumoylating isopeptidase 1 involved_in ISO (PMID:29666234) UniProt PMID:29666234 NCBI chrNW_004624752:7,010,941...7,031,125
Ensembl chrNW_004624752:7,010,963...7,031,125 		JBrowse link
G Foxf2 forkhead box F2 involved_in ISO (PMID:29374064) UniProt PMID:29374064 NCBI chrNW_004624756:23,209,402...23,213,817
Ensembl chrNW_004624756:23,209,390...23,213,802 		JBrowse link
G Glmn glomulin, FKBP associated protein acts_upstream_of_or_within ISO (PMID:22405651) MGI PMID:22405651 NCBI chrNW_004624742:5,434,588...5,477,647 JBrowse link
G Gna12 G protein subunit alpha 12 involved_in ISO (MGI:5448916|PMID:22609986)
(PMID:22609986)		 UniProt PMID:22609986 MGI:5448916 NCBI chrNW_004624740:30,134,262...30,245,079
Ensembl chrNW_004624740:30,133,435...30,245,079 		JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein involved_in ISO (PMID:12643283) UniProt PMID:12643283 NCBI chrNW_004624901:515,761...522,845
Ensembl chrNW_004624901:516,855...523,337 		JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein involved_in ISO (PMID:19435460) UniProt PMID:19435460 NCBI chrNW_004624758:4,168,341...4,211,893
Ensembl chrNW_004624758:4,167,215...4,211,487 		JBrowse link
G Ube2k ubiquitin conjugating enzyme E2 K acts_upstream_of_or_within ISO (PMID:18710920) MGI PMID:18710920 NCBI chrNW_004624761:27,205,034...27,277,016
Ensembl chrNW_004624761:27,205,034...27,276,884 		JBrowse link
G Ubqln4 ubiquilin 4 involved_in ISO (PMID:27113755)
(PMID:15280365)		 UniProt PMID:15280365 PMID:27113755 NCBI chrNW_004624885:1,382,302...1,398,474
Ensembl chrNW_004624885:1,383,897...1,398,484 		JBrowse link
G Ufl1 UFM1 specific ligase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20228063) MGI
TreeGrafter		 PMID:20228063 GO_REF:0000118 NCBI chrNW_004624810:8,804,330...8,832,460
Ensembl chrNW_004624810:8,805,964...8,832,358 		JBrowse link
G Wnt10b Wnt family member 10B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19056892) Ensembl
MGI		 PMID:19056892 GO_REF:0000107 NCBI chrNW_004624816:3,221,573...3,227,102
Ensembl chrNW_004624816:3,210,828...3,227,096 		JBrowse link
G Xpo1 exportin 1 involved_in ISO (PMID:29666234) UniProt PMID:29666234 NCBI chrNW_004624833:375,817...424,499
Ensembl chrNW_004624833:375,820...424,499 		JBrowse link
retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg2a AFG2 AAA ATPase homolog A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624777:3,342,437...3,710,544
Ensembl chrNW_004624777:3,342,271...3,639,118 		JBrowse link
G Aup1 AUP1 lipid droplet regulating VLDL assembly factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624749:28,983,753...28,986,785
Ensembl chrNW_004624749:28,983,802...28,986,643 		JBrowse link
G Derl1 derlin 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:15215855)
(PMID:15215856)
(PMID:25660456)		 MGI
UniProt
ParkinsonsUK-UCL		 PMID:15215855 PMID:15215856 PMID:25660456 NCBI chrNW_004624735:31,832,711...31,857,687
Ensembl chrNW_004624735:31,832,701...31,857,687 		JBrowse link
G Derl2 derlin 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:16449189)
(PMID:21220515)		 UniProt
MGI		 PMID:16449189 PMID:21220515 NCBI chrNW_004624786:9,274,302...9,285,645
Ensembl chrNW_004624786:9,274,302...9,285,288 		JBrowse link
G Erlec1 endoplasmic reticulum lectin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624833:7,964,815...7,992,277
Ensembl chrNW_004624833:7,964,810...7,992,582 		JBrowse link
G Faf2 Fas associated factor family member 2 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624733:13,608,993...13,674,200
Ensembl chrNW_004624733:13,608,360...13,674,175 		JBrowse link
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:29,069,995...29,081,085
Ensembl chrNW_004624746:29,068,350...29,081,085 		JBrowse link
G Hsp90b1 heat shock protein 90 beta family member 1 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624750:4,738,563...4,752,227
Ensembl chrNW_004624750:4,737,894...4,752,221 		JBrowse link
G Nploc4 NPL4 homolog, ubiquitin recognition factor involved_in ISO (PMID:25660456)
(MGI:5634892|PMID:12847084)		 ParkinsonsUK-UCL
ComplexPortal		 PMID:12847084 PMID:25660456 MGI:5634892 RGD:10047330 NCBI chrNW_004624801:10,531,107...10,589,502
Ensembl chrNW_004624801:10,533,064...10,589,096 		JBrowse link
G Os9 OS9 endoplasmic reticulum lectin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624802:10,221,633...10,252,008
Ensembl chrNW_004624802:10,222,259...10,252,039 		JBrowse link
G Sec61b SEC61 translocon subunit beta involved_in ISO (PMID:17215517) UniProt PMID:17215517 NCBI chrNW_004624825:1,762,735...1,771,271
Ensembl chrNW_004624825:1,762,734...1,771,233 		JBrowse link
G Sel1l SEL1L adaptor subunit of SYVN1 ubiquitin ligase involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624734:20,532,676...20,596,847
Ensembl chrNW_004624734:20,532,235...20,595,784 		JBrowse link
G Selenos selenoprotein S involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624768:3,539,369...3,550,716
Ensembl chrNW_004624768:3,539,465...3,550,211 		JBrowse link
G Syvn1 synoviolin 1 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chrNW_004624767:21,269,909...21,276,739
Ensembl chrNW_004624767:21,270,841...21,275,653 		JBrowse link
G Tmem129 transmembrane protein 129, E3 ubiquitin ligase involved_in ISO (PMID:24807418) ParkinsonsUK-UCL PMID:24807418 NCBI chrNW_004624755:25,694,391...25,699,294
Ensembl chrNW_004624755:25,694,026...25,699,489 		JBrowse link
G Ufd1 ubiquitin recognition factor in ER associated degradation 1 involved_in ISO (MGI:5634892|PMID:12847084)
(PMID:25660456)		 ComplexPortal
ParkinsonsUK-UCL		 PMID:12847084 PMID:25660456 MGI:5634892 RGD:10047330 NCBI chrNW_004624747:110,090...132,145
Ensembl chrNW_004624747:110,090...132,097 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624915:253,240...270,440
Ensembl chrNW_004624915:253,240...270,501 		JBrowse link
ribosome-associated ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascc2 activating signal cointegrator 1 complex subunit 2 involved_in ISO (PMID:32099016) UniProt PMID:32099016 NCBI chrNW_004624747:6,103,219...6,150,011
Ensembl chrNW_004624747:6,105,753...6,149,987 		JBrowse link
G Ascc3 activating signal cointegrator 1 complex subunit 3 involved_in ISO (PMID:32099016) UniProt PMID:32099016 NCBI chrNW_004624810:4,112,072...4,432,639
Ensembl chrNW_004624810:4,123,746...4,431,003 		JBrowse link
G Ltn1 listerin E3 ubiquitin protein ligase 1 involved_in IEA InterPro
UniProt
TreeGrafter		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624745:16,939,183...16,988,438
Ensembl chrNW_004624745:16,936,987...16,988,519 		JBrowse link
G Nemf nuclear export mediator factor involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624731:18,917,097...18,963,490
Ensembl chrNW_004624731:18,917,191...18,961,764 		JBrowse link
G Rnf10 ring finger protein 10 involved_in ISO (PMID:34348161), (PMID:34469731) UniProt PMID:34348161 PMID:34469731 NCBI chrNW_004624747:13,094,084...13,134,360 JBrowse link
G Tcf25 transcription factor 25 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624746:137,926...162,467
Ensembl chrNW_004624746:137,926...162,442 		JBrowse link
G Trip4 thyroid hormone receptor interactor 4 involved_in ISO (PMID:32099016) UniProt PMID:32099016 NCBI chrNW_004624781:8,118,382...8,191,823
Ensembl chrNW_004624781:8,118,387...8,192,637 		JBrowse link
G Znf598 zinc finger protein 598, E3 ubiquitin ligase involved_in ISO (PMID:32099016) UniProt PMID:32099016 NCBI chrNW_004624913:237,668...249,786
Ensembl chrNW_004624913:237,658...252,189 		JBrowse link
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within		 ISO (MGI:5299399|PMID:21911472)
(PMID:32558204)
(PMID:22017875), (PMID:22017876), (PMID:22017877), (PMID:36608670)		 UniProt
MGI		 PMID:21911472 PMID:22017875 PMID:22017876 PMID:22017877 PMID:32558204 More... MGI:5299399 NCBI chrNW_004624831:868,417...1,065,591
Ensembl chrNW_004624831:868,563...1,060,248 		JBrowse link
G Ccnf cyclin F involved_in ISO (PMID:20596027), (PMID:25557911) UniProt PMID:20596027 PMID:25557911 NCBI chrNW_004624824:181,696...204,045
Ensembl chrNW_004624824:181,735...204,029 		JBrowse link
G Cul1 cullin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624800:6,877,986...6,978,587 JBrowse link
G Cul2 cullin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624805:6,992,546...7,094,855 JBrowse link
G Fbxl12 F-box and leucine rich repeat protein 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:2,100,124...2,105,712
Ensembl chrNW_004624828:2,100,053...2,105,845 		JBrowse link
G Fbxl14 F-box and leucine rich repeat protein 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:11,273,798...11,276,915 JBrowse link
G Fbxl15 F-box and leucine rich repeat protein 15 involved_in ISO (PMID:21572392) UniProt PMID:21572392 NCBI chrNW_004624831:1,823,244...1,826,646
Ensembl chrNW_004624831:1,823,832...1,826,646 		JBrowse link
G Fbxl17 F-box and leucine rich repeat protein 17 involved_in ISO (PMID:24035498), (PMID:27234298) UniProt PMID:24035498 PMID:27234298 NCBI chrNW_004624743:25,787,012...26,278,813
Ensembl chrNW_004624743:25,789,733...26,278,728 		JBrowse link
G Fbxl18 F-box and leucine rich repeat protein 18 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624740:28,098,394...28,126,181
Ensembl chrNW_004624740:28,098,310...28,126,454 		JBrowse link
G Fbxl2 F-box and leucine rich repeat protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624788:11,253,912...11,350,045
Ensembl chrNW_004624788:11,253,934...11,349,137 		JBrowse link
G Fbxl3 F-box and leucine rich repeat protein 3 involved_in ISO (PMID:17463251)
(MGI:5470183|PMID:23452855), (MGI:5487698|PMID:23452856)		 UniProt PMID:17463251 PMID:23452855 PMID:23452856 MGI:5470183 MGI:5487698 NCBI chrNW_004624751:23,374,622...23,391,535
Ensembl chrNW_004624751:23,374,702...23,398,727 		JBrowse link
G Fbxl4 F-box and leucine rich repeat protein 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624810:6,172,807...6,238,045
Ensembl chrNW_004624810:6,185,748...6,239,481 		JBrowse link
G Fbxl5 F-box and leucine rich repeat protein 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624755:16,197,223...16,245,108
Ensembl chrNW_004624755:16,197,242...16,245,653 		JBrowse link
G Fbxl6 F-box and leucine rich repeat protein 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624735:12,491,155...12,494,152
Ensembl chrNW_004624735:12,491,174...12,494,059 		JBrowse link
G Fbxl7 F-box and leucine rich repeat protein 7 involved_in ISO (MGI:5426128|PMID:22306998), (MGI:6368091|PMID:25778398)
(PMID:25778398)
(PMID:28218735)		 UniProt PMID:22306998 PMID:25778398 PMID:28218735 MGI:5426128 MGI:6368091 NCBI chrNW_004624751:12,431,974...12,831,463
Ensembl chrNW_004624751:12,432,207...12,828,946 		JBrowse link
G Fbxl8 F-box and leucine rich repeat protein 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624746:19,151,583...19,155,069
Ensembl chrNW_004624746:19,151,929...19,154,572 		JBrowse link
G Fbxo2 F-box protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624818:1,300,191...1,311,245
Ensembl chrNW_004624818:1,299,067...1,309,667 		JBrowse link
G Fbxo27 F-box protein 27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624794:12,370,117...12,375,180 JBrowse link
G Fbxo3 F-box protein 3 involved_in ISO (PMID:26037928)
(MGI:5488521|PMID:23542741)		 UniProt PMID:23542741 PMID:26037928 MGI:5488521 NCBI chrNW_004624767:13,382,187...13,410,143
Ensembl chrNW_004624767:13,379,895...13,410,210 		JBrowse link
G Fbxo31 F-box protein 31 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624746:3,034,458...3,078,230
Ensembl chrNW_004624746:3,043,600...3,078,223 		JBrowse link
G Fbxo36 F-box protein 36 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624843:3,722,328...3,786,575
Ensembl chrNW_004624843:3,722,531...3,786,575 		JBrowse link
G Fbxo38 F-box protein 38 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624774:7,798,407...7,849,840
Ensembl chrNW_004624774:7,798,369...7,850,056 		JBrowse link
G Fbxo4 F-box protein 4 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624759:13,019,929...13,047,744
Ensembl chrNW_004624759:13,017,815...13,046,883 		JBrowse link
G Fbxo48 F-box protein 48 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624762:4,847,757...4,850,962
Ensembl chrNW_004624762:4,848,676...4,850,962 		JBrowse link
G Fbxo6 F-box protein 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624818:1,286,819...1,292,565
Ensembl chrNW_004624818:1,286,820...1,292,755 		JBrowse link
G Fbxo9 F-box protein 9 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624850:287,585...335,939
Ensembl chrNW_004624850:287,586...336,827 		JBrowse link
G Fbxw11 F-box and WD repeat domain containing 11 involved_in ISO (MGI:2176150|PMID:11896578)
(PMID:20347421), (PMID:22017875), (PMID:22017876), (PMID:36608670)		 UniProt PMID:11896578 PMID:20347421 PMID:22017875 PMID:22017876 PMID:36608670 MGI:2176150 NCBI chrNW_004624733:17,985,546...18,121,398 JBrowse link
G Fbxw5 F-box and WD repeat domain containing 5 involved_in ISO (MGI:5476881|PMID:23314863)
(PMID:21725316)		 UniProt PMID:21725316 PMID:23314863 MGI:5476881 NCBI chrNW_004624760:939,896...943,636
Ensembl chrNW_004624760:940,256...943,644 		JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in ISO (MGI:6107392|PMID:21953459)
(PMID:15103331), (PMID:17434132)
(PMID:28007894)		 UniProt PMID:15103331 PMID:17434132 PMID:21953459 PMID:28007894 MGI:6107392 NCBI chrNW_004624858:3,778,842...3,974,351
Ensembl chrNW_004624858:3,775,795...3,873,336 		JBrowse link
G Kif14 kinesin family member 14 involved_in ISO (PMID:24854087) UniProt PMID:24854087 NCBI chrNW_004624807:10,093,518...10,144,484
Ensembl chrNW_004624807:10,092,934...10,143,399 		JBrowse link
G Rbx1 ring-box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624752:7,547,702...7,560,605
Ensembl chrNW_004624752:7,546,959...7,560,668 		JBrowse link
G Skp1 S-phase kinase associated protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:38,051,280...38,069,648 JBrowse link
G Skp2 S-phase kinase associated protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624759:18,796,055...18,858,692
Ensembl chrNW_004624759:18,830,323...18,858,712 		JBrowse link
G Wwtr1 WW domain containing transcription regulator 1 acts_upstream_of_or_within ISO (PMID:17636028) MGI PMID:17636028 NCBI chrNW_004624730:26,813,716...26,967,615
Ensembl chrNW_004624730:26,813,624...26,967,691 		JBrowse link
ubiquitin-dependent protein catabolic process via the C-end degron rule pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul2 cullin 2 involved_in ISO (PMID:29779948) UniProt PMID:29779948 NCBI chrNW_004624805:6,992,546...7,094,855 JBrowse link
G Cul4a cullin 4A involved_in ISO (PMID:34065512) UniProt PMID:34065512 NCBI chrNW_004624793:686,720...722,516
Ensembl chrNW_004624793:688,135...722,490 		JBrowse link
G Dcaf12 DDB1 and CUL4 associated factor 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624736:38,488,120...38,528,500
Ensembl chrNW_004624736:38,489,466...38,527,706 		JBrowse link
G Fem1a fem-1 homolog A involved_in ISO (PMID:29779948), (PMID:33398168), (PMID:33398170) UniProt PMID:29779948 PMID:33398168 PMID:33398170 NCBI chrNW_004624828:4,989,025...4,992,730
Ensembl chrNW_004624828:4,990,299...4,992,287 		JBrowse link
G Fem1b fem-1 homolog B involved_in ISO (PMID:29779948), (PMID:33398168), (PMID:33398170)
(MGI:6790336|PMID:34562363)		 UniProt PMID:29779948 PMID:33398168 PMID:33398170 PMID:34562363 MGI:6790336 NCBI chrNW_004624781:4,814,030...4,827,274
Ensembl chrNW_004624781:4,817,090...4,827,837 		JBrowse link
G Fem1c fem-1 homolog C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:6,380,506...6,413,006 JBrowse link
G Klhdc1 kelch domain containing 1 involved_in ISO (PMID:32200094) UniProt PMID:32200094 NCBI chrNW_004624731:18,977,647...19,027,799
Ensembl chrNW_004624731:18,977,656...19,024,212 		JBrowse link
G Klhdc10 kelch domain containing 10 involved_in ISO (PMID:29779948), (PMID:33909987) UniProt PMID:29779948 PMID:33909987 NCBI chrNW_004624783:6,118,814...6,188,198
Ensembl chrNW_004624783:6,118,829...6,188,611 		JBrowse link
G Klhdc2 kelch domain containing 2 involved_in ISO (PMID:29775578), (PMID:29779948), (PMID:30526872) UniProt PMID:29775578 PMID:29779948 PMID:30526872 NCBI chrNW_004624731:18,935,841...18,973,879
Ensembl chrNW_004624731:18,962,888...18,974,096 		JBrowse link
G Klhdc3 kelch domain containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:16,479,389...16,485,573
Ensembl chrNW_004624754:16,479,389...16,483,824 		JBrowse link
G Rbx1 ring-box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624752:7,547,702...7,560,605
Ensembl chrNW_004624752:7,546,959...7,560,668 		JBrowse link
G Trpc4ap transient receptor potential cation channel subfamily C member 4 associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624842:4,317,710...4,395,792
Ensembl chrNW_004624842:4,316,578...4,395,792 		JBrowse link
ubiquitin-dependent protein catabolic process via the N-end rule pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ubr1 ubiquitin protein ligase E3 component n-recognin 1 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624804:10,035,122...10,225,640
Ensembl chrNW_004624804:10,036,225...10,225,571 		JBrowse link
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624754:16,701,950...16,798,293
Ensembl chrNW_004624754:16,701,331...16,798,897 		JBrowse link
G Ubr3 ubiquitin protein ligase E3 component n-recognin 3 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004624787:7,358,426...7,610,872
Ensembl chrNW_004624787:7,358,441...7,608,483 		JBrowse link
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISO (PMID:38030679) UniProt PMID:38030679 NCBI chrNW_004624764:4,223,784...4,358,923
Ensembl chrNW_004624764:4,223,784...4,358,885 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15093
    metabolic process 9086
      primary metabolic process 7934
        protein metabolic process 3621
          protein catabolic process 916
            proteasomal protein catabolic process 478
              EGAD pathway 0
              ERAD pathway + 86
              negative regulation of proteasomal protein catabolic process + 57
              positive regulation of proteasomal protein catabolic process + 111
              proteasomal ubiquitin-independent protein catabolic process 4
              proteasome-mediated ubiquitin-dependent protein catabolic process + 354
              regulation of proteasomal protein catabolic process + 193
Path 2
Term Annotations click to browse term
  biological_process 15093
    metabolic process 9086
      organic substance metabolic process 8667
        organonitrogen compound metabolic process 4541
          organonitrogen compound catabolic process 1265
            protein catabolic process 916
              proteolysis involved in protein catabolic process 681
                proteasomal protein catabolic process 478
                  EGAD pathway 0
                  ERAD pathway + 86
                  negative regulation of proteasomal protein catabolic process + 57
                  positive regulation of proteasomal protein catabolic process + 111
                  proteasomal ubiquitin-independent protein catabolic process 4
                  proteasome-mediated ubiquitin-dependent protein catabolic process + 354
                  regulation of proteasomal protein catabolic process + 193
paths to the root