CAMK1D (calcium/calmodulin dependent protein kinase ID) - Rat Genome Database

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Pathways
Gene: CAMK1D (calcium/calmodulin dependent protein kinase ID) Homo sapiens
Analyze
Symbol: CAMK1D
Name: calcium/calmodulin dependent protein kinase ID
RGD ID: 1603628
HGNC Page HGNC:19341
Description: Enables calcium/calmodulin-dependent protein kinase activity. Involved in several processes, including positive regulation of CREB transcription factor activity; positive regulation of phagocytosis; and positive regulation of respiratory burst. Located in cytoplasm and nucleus.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: calcium/calmodulin-dependent protein kinase ID; calcium/calmodulin-dependent protein kinase type 1D; caM kinase I delta; CaM kinase ID; CaM-K1; caM-KI delta; CAMK1D/ANAPC5 fusion; caMKI delta; CamKI-like protein kinase; CaMKID; CKLiK
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381012,349,547 - 12,835,545 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1012,349,547 - 12,835,545 (+)Ensemblhg38GRCh38
GRCh371012,391,546 - 12,877,545 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361012,431,589 - 12,911,741 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1012,320,755 - 12,797,502 (+)NCBICelera
Cytogenetic Map10p13NCBI
HuRef1012,307,786 - 12,784,748 (+)NCBIHuRef
CHM1_11012,391,537 - 12,871,781 (+)NCBICHM1_1
T2T-CHM13v2.01012,360,834 - 12,849,903 (+)NCBIT2T-CHM13v2.0
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(2,4,5-trichlorophenoxy)acetic acid  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-hydroxypropanoic acid  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxynon-2-enal  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (EXP)
aldrin  (ISO)
all-trans-retinoic acid  (EXP)
aristolochic acid A  (EXP)
atrazine  (ISO)
avobenzone  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (EXP)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
butanal  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (EXP)
carbon nanotube  (ISO)
chlordecone  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (EXP)
copper(II) sulfate  (ISO)
coumestrol  (EXP)
Cuprizon  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (EXP)
dibutyl phthalate  (ISO)
diclofenac  (ISO)
dorsomorphin  (EXP)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
folic acid  (ISO)
fulvestrant  (EXP)
glyphosate  (ISO)
hypochlorous acid  (ISO)
inulin  (ISO)
methapyrilene  (EXP)
methoxychlor  (ISO)
methylmercury chloride  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
N,N-diethyl-m-toluamide  (ISO)
O-methyleugenol  (EXP)
okadaic acid  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (EXP)
pirinixic acid  (ISO)
potassium chromate  (EXP)
progesterone  (ISO)
rac-lactic acid  (EXP)
rotenone  (ISO)
SB 431542  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (EXP)
sodium fluoride  (ISO)
succimer  (ISO)
sulforaphane  (EXP)
sunitinib  (EXP)
tacrolimus hydrate  (ISO)
tamoxifen  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
titanium dioxide  (ISO)
trichloroethene  (ISO)
trichostatin A  (EXP)
triphenyl phosphate  (EXP)
troglitazone  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (EXP)
vinclozolin  (ISO)
zoledronic acid  (EXP)

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:11050006   PMID:11264466   PMID:12477932   PMID:12935886   PMID:14702039   PMID:15164054   PMID:15489334   PMID:15840691   PMID:16324104   PMID:16344560   PMID:16385451  
PMID:17056143   PMID:18029348   PMID:18372903   PMID:18976975   PMID:19020323   PMID:19020324   PMID:19139842   PMID:19324937   PMID:19383354   PMID:19602701   PMID:19670153   PMID:19720844  
PMID:19741467   PMID:19794065   PMID:19833888   PMID:19933996   PMID:19953087   PMID:20080650   PMID:20161779   PMID:20379614   PMID:20418484   PMID:20571754   PMID:20677014   PMID:20712903  
PMID:20862305   PMID:20879858   PMID:20889853   PMID:20927120   PMID:21044950   PMID:21832049   PMID:21873635   PMID:21909839   PMID:21988832   PMID:22863883   PMID:22923468   PMID:23251661  
PMID:23459443   PMID:23568457   PMID:23824909   PMID:23840313   PMID:24159190   PMID:24510904   PMID:25009623   PMID:25201988   PMID:25366777   PMID:25410890   PMID:25468996   PMID:26186194  
PMID:26760575   PMID:28079868   PMID:28319085   PMID:28514442   PMID:29507755   PMID:29533498   PMID:32665263   PMID:32707033   PMID:33127268   PMID:33660800   PMID:33961781   PMID:34857952  
PMID:37788672   PMID:39079530   PMID:40437099  


Genomics

Comparative Map Data
CAMK1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381012,349,547 - 12,835,545 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1012,349,547 - 12,835,545 (+)Ensemblhg38GRCh38
GRCh371012,391,546 - 12,877,545 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361012,431,589 - 12,911,741 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1012,320,755 - 12,797,502 (+)NCBICelera
Cytogenetic Map10p13NCBI
HuRef1012,307,786 - 12,784,748 (+)NCBIHuRef
CHM1_11012,391,537 - 12,871,781 (+)NCBICHM1_1
T2T-CHM13v2.01012,360,834 - 12,849,903 (+)NCBIT2T-CHM13v2.0
Camk1d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3925,298,268 - 5,719,665 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl25,298,268 - 5,719,326 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3825,293,457 - 5,714,860 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl25,293,457 - 5,714,515 (-)Ensemblmm10GRCm38
MGSCv3725,214,503 - 5,635,710 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3625,210,729 - 5,631,936 (-)NCBIMGSCv36mm8
Celera25,248,039 - 5,664,845 (-)NCBICelera
Cytogenetic Map2A1NCBI
cM Map23.39NCBI
Camk1d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81777,491,191 - 77,892,018 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1777,491,220 - 77,892,012 (+)EnsemblGRCr8
mRatBN7.21772,581,899 - 72,982,704 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1772,581,979 - 72,980,556 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1776,089,042 - 76,490,160 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01779,910,489 - 80,310,785 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01773,960,745 - 74,360,775 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01776,532,611 - 76,938,956 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1776,532,611 - 76,938,956 (+)Ensemblrn6Rnor6.0
Rnor_5.01778,552,005 - 78,591,805 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.01778,187,614 - 78,538,315 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41783,649,720 - 84,061,160 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1772,029,264 - 72,426,573 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
Camk1d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955462391,235 - 813,598 (+)Ensembl
ChiLan1.0NW_004955462391,235 - 819,240 (+)NCBIChiLan1.0ChiLan1.0
CAMK1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2824,879,343 - 25,360,851 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11024,884,690 - 25,366,182 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01012,359,213 - 12,840,464 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11012,471,340 - 12,809,098 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1012,540,854 - 12,808,599 (+)EnsemblpanPan2panpan1.1
CAMK1D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1223,680,395 - 24,113,922 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl223,685,672 - 24,114,084 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha220,698,974 - 21,138,879 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0224,052,518 - 24,484,818 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl224,052,523 - 24,484,827 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1221,178,935 - 21,612,394 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0222,021,253 - 22,454,982 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0222,737,896 - 23,169,796 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Camk1d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934426,461,700 - 26,858,995 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364842,632,107 - 3,023,869 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364842,626,909 - 2,768,304 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAMK1D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1059,204,724 - 59,630,285 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11059,199,541 - 59,630,191 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21064,912,917 - 64,969,603 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CAMK1D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1912,392,452 - 12,873,294 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl912,809,028 - 12,872,778 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605117,902,237 - 18,395,258 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Camk1d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248055,193,397 - 5,408,011 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248055,047,885 - 5,413,264 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Camk1d
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11411,643,288 - 12,042,927 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in CAMK1D
67 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 10p13(chr10:12377967-12692594)x3 copy number gain See cases [RCV000051595] Chr10:12377967..12692594 [GRCh38]
Chr10:12419966..12734593 [GRCh37]
Chr10:12459972..12774599 [NCBI36]
Chr10:10p13
uncertain significance
GRCh38/hg38 10p15.3-13(chr10:90421-15569528)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052496]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052496]|See cases [RCV000052496] Chr10:90421..15569528 [GRCh38]
Chr10:224406..15611527 [GRCh37]
Chr10:126361..15651533 [NCBI36]
Chr10:10p15.3-13
pathogenic
GRCh38/hg38 10p15.1-13(chr10:4802753-16823491)x1 copy number loss See cases [RCV000052500] Chr10:4802753..16823491 [GRCh38]
Chr10:4844945..16865490 [GRCh37]
Chr10:4834945..16905496 [NCBI36]
Chr10:10p15.1-13
pathogenic
GRCh38/hg38 10p15.3-12.31(chr10:69261-19184047)x3 copy number gain See cases [RCV000053507] Chr10:69261..19184047 [GRCh38]
Chr10:224406..19472976 [GRCh37]
Chr10:105201..19512982 [NCBI36]
Chr10:10p15.3-12.31
pathogenic
GRCh38/hg38 10p15.3-12.2(chr10:90221-22567425)x3 copy number gain See cases [RCV000053508] Chr10:90221..22567425 [GRCh38]
Chr10:224406..22856354 [GRCh37]
Chr10:126161..22896360 [NCBI36]
Chr10:10p15.3-12.2
pathogenic
GRCh38/hg38 10p15.3-12.1(chr10:90421-29058318)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053512]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053512]|See cases [RCV000053512] Chr10:90421..29058318 [GRCh38]
Chr10:224406..29347247 [GRCh37]
Chr10:126361..29387253 [NCBI36]
Chr10:10p15.3-12.1
pathogenic
NM_020397.3(CAMK1D):c.301G>A (p.Val101Met) single nucleotide variant Malignant melanoma [RCV000068852] Chr10:12760949 [GRCh38]
Chr10:12802948 [GRCh37]
Chr10:12842954 [NCBI36]
Chr10:10p13
not provided
NM_020397.3(CAMK1D):c.452T>C (p.Leu151Ser) single nucleotide variant Malignant melanoma [RCV000068853] Chr10:12769686 [GRCh38]
Chr10:12811685 [GRCh37]
Chr10:12851691 [NCBI36]
Chr10:10p13
not provided
GRCh38/hg38 10p13(chr10:12333253-13948472)x1 copy number loss See cases [RCV000134396] Chr10:12333253..13948472 [GRCh38]
Chr10:12375252..13990472 [GRCh37]
Chr10:12415258..14030478 [NCBI36]
Chr10:10p13
likely pathogenic
GRCh38/hg38 10p15.3-13(chr10:73856-12815915)x3 copy number gain See cases [RCV000135340] Chr10:73856..12815915 [GRCh38]
Chr10:119796..12857914 [GRCh37]
Chr10:109796..12897920 [NCBI36]
Chr10:10p15.3-13
pathogenic
GRCh38/hg38 10p14-12.31(chr10:7428770-21587752)x1 copy number loss See cases [RCV000137307] Chr10:7428770..21587752 [GRCh38]
Chr10:7470732..21876681 [GRCh37]
Chr10:7510738..21916687 [NCBI36]
Chr10:10p14-12.31
pathogenic|uncertain significance
GRCh38/hg38 10p15.3-13(chr10:70478-15373336)x3 copy number gain See cases [RCV000137384] Chr10:70478..15373336 [GRCh38]
Chr10:224406..15415335 [GRCh37]
Chr10:106418..15455341 [NCBI36]
Chr10:10p15.3-13
uncertain significance
GRCh38/hg38 10p15.3-12.1(chr10:90205-26339978)x3 copy number gain See cases [RCV000138428] Chr10:90205..26339978 [GRCh38]
Chr10:224406..26628907 [GRCh37]
Chr10:126145..26668913 [NCBI36]
Chr10:10p15.3-12.1
pathogenic
GRCh38/hg38 10p15.3-13(chr10:70478-13736564)x1 copy number loss See cases [RCV000138960] Chr10:70478..13736564 [GRCh38]
Chr10:224406..13778564 [GRCh37]
Chr10:106418..13818570 [NCBI36]
Chr10:10p15.3-13
pathogenic
GRCh38/hg38 10p15.1-q11.22(chr10:4604734-48074662)x3 copy number gain See cases [RCV000141497] Chr10:4604734..48074662 [GRCh38]
Chr10:4646926..47531169 [GRCh37]
Chr10:4636926..47125152 [NCBI36]
Chr10:10p15.1-q11.22
benign
GRCh38/hg38 10p15.3-13(chr10:54086-13205916)x3 copy number gain See cases [RCV000142292] Chr10:54086..13205916 [GRCh38]
Chr10:100026..13247916 [GRCh37]
Chr10:90026..13287922 [NCBI36]
Chr10:10p15.3-13
pathogenic
GRCh38/hg38 10p15.3-12.31(chr10:54086-19336980)x1 copy number loss See cases [RCV000143703] Chr10:54086..19336980 [GRCh38]
Chr10:100026..19625909 [GRCh37]
Chr10:90026..19665915 [NCBI36]
Chr10:10p15.3-12.31
pathogenic|likely pathogenic
GRCh37/hg19 10p13-q26.3(chr10:12829206-135427143) copy number loss Distal 10q deletion syndrome [RCV003319583] Chr10:12829206..135427143 [GRCh37]
Chr10:10p13-q26.3
pathogenic
GRCh37/hg19 10p13(chr10:12821353-13275585)x3 copy number gain See cases [RCV000449238] Chr10:12821353..13275585 [GRCh37]
Chr10:10p13
likely benign
GRCh37/hg19 10p14-13(chr10:9180833-12424863)x3 copy number gain See cases [RCV000446118] Chr10:9180833..12424863 [GRCh37]
Chr10:10p14-13
uncertain significance
GRCh37/hg19 10p15.3-11.23(chr10:100026-30278548)x3 copy number gain See cases [RCV000447131] Chr10:100026..30278548 [GRCh37]
Chr10:10p15.3-11.23
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:93297-135378918)x3 copy number gain See cases [RCV000448750] Chr10:93297..135378918 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143) copy number gain See cases [RCV000511389] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic|uncertain significance
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143)x3 copy number gain See cases [RCV000510861] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10p15.3-q11.23(chr10:100026-50961640)x3 copy number gain See cases [RCV000510893] Chr10:100026..50961640 [GRCh37]
Chr10:10p15.3-q11.23
pathogenic
NM_153498.4(CAMK1D):c.274A>C (p.Asn92His) single nucleotide variant not specified [RCV004305998] Chr10:12666785 [GRCh38]
Chr10:12708784 [GRCh37]
Chr10:10p13
uncertain significance
GRCh37/hg19 10p15.3-13(chr10:100026-12842179)x1 copy number loss See cases [RCV000512541] Chr10:100026..12842179 [GRCh37]
Chr10:10p15.3-13
pathogenic
GRCh37/hg19 10p13(chr10:12802555-14847149)x1 copy number loss not provided [RCV000683270] Chr10:12802555..14847149 [GRCh37]
Chr10:10p13
uncertain significance
NC_000010.10:g.(?_12833157)_(13178866_?)del deletion Primary open angle glaucoma [RCV000708259] Chr10:12833157..13178866 [GRCh37]
Chr10:10p13
pathogenic
Single allele deletion Hypoparathyroidism, deafness, renal disease syndrome [RCV000735901] Chr10:4689760..19120882 [GRCh37]
Chr10:10p15.1-12.31
pathogenic
GRCh37/hg19 10p13(chr10:12601504-12662552)x1 copy number loss not provided [RCV000737023] Chr10:12601504..12662552 [GRCh37]
Chr10:10p13
benign
GRCh37/hg19 10p15.3-13(chr10:69083-12887271)x3 copy number gain not provided [RCV000749463] Chr10:69083..12887271 [GRCh37]
Chr10:10p15.3-13
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:73232-135524321)x3 copy number gain not provided [RCV000749464] Chr10:73232..135524321 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:98087-135477883)x3 copy number gain not provided [RCV000749465] Chr10:98087..135477883 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
NM_153498.4(CAMK1D):c.324C>T (p.Asp108=) single nucleotide variant not provided [RCV000883927] Chr10:12760972 [GRCh38]
Chr10:12802971 [GRCh37]
Chr10:10p13
benign
NM_153498.4(CAMK1D):c.876C>T (p.Ser292=) single nucleotide variant not provided [RCV000905263] Chr10:12824507 [GRCh38]
Chr10:12866506 [GRCh37]
Chr10:10p13
likely benign
GRCh37/hg19 10p15.3-13(chr10:100026-15273144)x3 copy number gain not provided [RCV000848062] Chr10:100026..15273144 [GRCh37]
Chr10:10p15.3-13
pathogenic
GRCh37/hg19 10p13(chr10:12805430-13306566)x3 copy number gain See cases [RCV001194562] Chr10:12805430..13306566 [GRCh37]
Chr10:10p13
uncertain significance
GRCh37/hg19 10p15.3-13(chr10:100026-15273144)x3 copy number gain not provided [RCV000848090] Chr10:100026..15273144 [GRCh37]
Chr10:10p15.3-13
pathogenic
GRCh37/hg19 10p14-13(chr10:12165983-12957560)x3 copy number gain not provided [RCV001006295] Chr10:12165983..12957560 [GRCh37]
Chr10:10p14-13
uncertain significance
NM_153498.4(CAMK1D):c.450_451del (p.Leu151fs) microsatellite Intellectual disability [RCV004785242] Chr10:12769681..12769682 [GRCh38]
Chr10:12811680..12811681 [GRCh37]
Chr10:10p13
likely pathogenic
NM_153498.4(CAMK1D):c.198A>G (p.Ile66Met) single nucleotide variant not provided [RCV000972596] Chr10:12553330 [GRCh38]
Chr10:12595329 [GRCh37]
Chr10:10p13
benign
GRCh37/hg19 10p13(chr10:12810570-13149670)x3 copy number gain not provided [RCV002472466] Chr10:12810570..13149670 [GRCh37]
Chr10:10p13
uncertain significance
GRCh37/hg19 10p14-13(chr10:9137489-17227168) copy number loss Neurodevelopmental delay [RCV001352639] Chr10:9137489..17227168 [GRCh37]
Chr10:10p14-13
pathogenic
GRCh37/hg19 10p15.3-q11.22(chr10:135655-47688677)x4 copy number gain Mosaic supernumerary isodicentric chromosome 10 [RCV001825164] Chr10:135655..47688677 [GRCh37]
Chr10:10p15.3-q11.22
not provided
GRCh37/hg19 10p15.1-11.21(chr10:6273934-34732521) copy number gain not specified [RCV002052863] Chr10:6273934..34732521 [GRCh37]
Chr10:10p15.1-11.21
pathogenic
NC_000010.10:g.(?_12111033)_(13342042_?)dup duplication not provided [RCV001979753] Chr10:12111033..13342042 [GRCh37]
Chr10:10p14-13
uncertain significance
GRCh37/hg19 10p15.3-13(chr10:100027-12648149)x3 copy number gain not provided [RCV002472393] Chr10:100027..12648149 [GRCh37]
Chr10:10p15.3-13
uncertain significance
NM_153498.4(CAMK1D):c.173C>T (p.Ala58Val) single nucleotide variant not specified [RCV004226714] Chr10:12553305 [GRCh38]
Chr10:12595304 [GRCh37]
Chr10:10p13
uncertain significance
NM_153498.4(CAMK1D):c.1105G>A (p.Glu369Lys) single nucleotide variant not specified [RCV004254666] Chr10:12828834 [GRCh38]
Chr10:12870833 [GRCh37]
Chr10:10p13
uncertain significance
NM_153498.4(CAMK1D):c.1067T>C (p.Phe356Ser) single nucleotide variant not specified [RCV004271500] Chr10:12828796 [GRCh38]
Chr10:12870795 [GRCh37]
Chr10:10p13
uncertain significance
GRCh37/hg19 10p14-q26.3(chr10:11138692-135427143) copy number gain Distal trisomy 10q [RCV003319593] Chr10:11138692..135427143 [GRCh37]
Chr10:10p14-q26.3
pathogenic
NM_153498.4(CAMK1D):c.121G>A (p.Glu41Lys) single nucleotide variant not specified [RCV004343623] Chr10:12553253 [GRCh38]
Chr10:12595252 [GRCh37]
Chr10:10p13
uncertain significance
GRCh37/hg19 10p14-13(chr10:10175327-13529362)x3 copy number gain not provided [RCV003484791] Chr10:10175327..13529362 [GRCh37]
Chr10:10p14-13
uncertain significance
NM_153498.4(CAMK1D):c.806C>T (p.Thr269Met) single nucleotide variant not specified [RCV004434624] Chr10:12816301 [GRCh38]
Chr10:12858300 [GRCh37]
Chr10:10p13
uncertain significance
NM_153498.4(CAMK1D):c.300G>C (p.Leu100=) single nucleotide variant not specified [RCV004434621] Chr10:12760948 [GRCh38]
Chr10:12802947 [GRCh37]
Chr10:10p13
likely benign
NM_153498.4(CAMK1D):c.577C>G (p.Leu193Val) single nucleotide variant not specified [RCV004434623] Chr10:12791169 [GRCh38]
Chr10:12833168 [GRCh37]
Chr10:10p13
uncertain significance
NM_153498.4(CAMK1D):c.208A>G (p.Ile70Val) single nucleotide variant not specified [RCV004434620] Chr10:12553340 [GRCh38]
Chr10:12595339 [GRCh37]
Chr10:10p13
uncertain significance
NM_153498.4(CAMK1D):c.824G>A (p.Arg275Gln) single nucleotide variant not specified [RCV004434625] Chr10:12816319 [GRCh38]
Chr10:12858318 [GRCh37]
Chr10:10p13
uncertain significance
GRCh37/hg19 10p15.3-12.31(chr10:100027-18976780)x3 copy number gain not provided [RCV004819307] Chr10:100027..18976780 [GRCh37]
Chr10:10p15.3-12.31
pathogenic
GRCh37/hg19 10p15.1-13(chr10:3983598-13457969)x3 copy number gain not provided [RCV004819555] Chr10:3983598..13457969 [GRCh37]
Chr10:10p15.1-13
uncertain significance
NM_153498.4(CAMK1D):c.1082C>T (p.Ser361Leu) single nucleotide variant not specified [RCV004895483] Chr10:12828811 [GRCh38]
Chr10:12870810 [GRCh37]
Chr10:10p13
uncertain significance
NM_153498.4(CAMK1D):c.214G>A (p.Val72Ile) single nucleotide variant not specified [RCV005314697] Chr10:12553346 [GRCh38]
Chr10:12595345 [GRCh37]
Chr10:10p13
uncertain significance
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:3494
Count of miRNA genes:1278
Interacting mature miRNAs:1622
Transcripts:ENST00000378845, ENST00000378847, ENST00000487696
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597988769GWAS1708068_Hasymmetrical dimethylarginine measurement, serum dimethylarginine amount QTL GWAS1708068 (human)0.000009asymmetrical dimethylarginine measurement, serum dimethylarginine amount101283088112830882Human
407043660GWAS692636_Hbody composition measurement QTL GWAS692636 (human)0.000004body mass (VT:0001259)101239678412396785Human
598002602GWAS1721901_Hbody height QTL GWAS1721901 (human)1e-12body height101277821212778213Human
628479342GWAS2387571_HHeadache QTL GWAS2387571 (human)5e-10Headache101268406212684063Human
598053765GWAS1773064_Hbody height QTL GWAS1773064 (human)1e-11body height101240608912406090Human
598034305GWAS1753604_Hbody height QTL GWAS1753604 (human)0.0000003body height101278271612782717Human
628675935GWAS2584164_Hbone tissue density QTL GWAS2584164 (human)8e-09bone tissue density101246386912463870Human
629004119GWAS2912348_Hbody height QTL GWAS2912348 (human)2e-38body height101282239512822396Human
629004118GWAS2912347_Hbody height QTL GWAS2912347 (human)3e-12body height101279484012794841Human
406996590GWAS645566_Hfrontal fibrosing alopecia QTL GWAS645566 (human)0.000005frontal fibrosing alopecia101246231412462315Human
407050349GWAS699325_Heating disorder QTL GWAS699325 (human)0.000004eating behavior trait (VT:0001431)101283320812833209Human
597302187GWAS1398261_Hsystemic lupus erythematosus QTL GWAS1398261 (human)3e-08systemic lupus erythematosus101244613712446138Human
598076311GWAS1795610_Hsocioeconomic status QTL GWAS1795610 (human)6e-09socioeconomic status101266995012669951Human
597053346GWAS1149420_Hhousehold income QTL GWAS1149420 (human)5e-09household income101265057812650579Human
407380095GWAS1029071_Hacute myeloid leukemia QTL GWAS1029071 (human)0.0000003acute myeloid leukemia101264957712649578Human
597464484GWAS1560558_Hage of onset of Parkinson disease QTL GWAS1560558 (human)0.000005age of onset of Parkinson disease101236453412364535Human
597139887GWAS1235961_Hsmoking initiation QTL GWAS1235961 (human)1e-11smoking initiation101269808312698084Human
406904442GWAS553418_HBorderline personality disorder QTL GWAS553418 (human)0.000003Borderline personality disorder101262313912623140Human
628610379GWAS2518608_Hlipid measurement QTL GWAS2518608 (human)0.000009lipid amount (VT:0001547)blood lipid measurement (CMO:0000050)101272968112729682Human
628886840GWAS2795069_Heducational attainment QTL GWAS2795069 (human)4e-14educational attainment101269808312698084Human
406929925GWAS578901_Hbody height QTL GWAS578901 (human)5e-09body height101278645412786455Human
597240796GWAS1336870_Heducational attainment QTL GWAS1336870 (human)2e-08educational attainment101235148912351490Human
617109134GWAS2126633_HAlzheimer disease, family history of Alzheimer’s disease QTL GWAS2126633 (human)8e-09Alzheimer disease, family history of Alzheimer’s disease101238000312380004Human
407040010GWAS688986_Hcalcium measurement QTL GWAS688986 (human)0.000008calcium amount (VT:0010499)blood calcium level (CMO:0000502)101255944012559441Human
407052808GWAS701784_Hage at assessment, pelvic organ prolapse QTL GWAS701784 (human)0.000003age at assessment, pelvic organ prolapse101249337812493379Human
625829121GWAS2250043_Htype 2 diabetes mellitus QTL GWAS2250043 (human)0.000003type 2 diabetes mellitus101248169812481699Human
597142489GWAS1238563_Heducational attainment QTL GWAS1238563 (human)4e-15educational attainment101239274312392744Human
597142488GWAS1238562_Heducational attainment QTL GWAS1238562 (human)2e-18educational attainment101235310112353102Human
597612494GWAS1669354_Hanaphylaxis QTL GWAS1669354 (human)3e-11anaphylaxis101258568112585682Human
407121950GWAS770926_Hmathematical ability QTL GWAS770926 (human)1e-08mathematical ability101235310112353102Human
407121951GWAS770927_Hmathematical ability QTL GWAS770927 (human)3e-11mathematical ability101271471412714715Human
406997023GWAS645999_Hintelligence QTL GWAS645999 (human)0.000007intelligence101265456312654564Human
597109751GWAS1205825_Hself reported educational attainment QTL GWAS1205825 (human)3e-09self reported educational attainment101266995012669951Human
597600767GWAS1657627_Hmyo-inositol measurement QTL GWAS1657627 (human)0.000008myo-inositol measurement101279322812793229Human
597109749GWAS1205823_Hself reported educational attainment QTL GWAS1205823 (human)1e-12self reported educational attainment101235310112353102Human
406929443GWAS578419_Hsmoking initiation QTL GWAS578419 (human)1e-11smoking initiation101269808312698084Human
598082498GWAS1801797_Hsocioeconomic status QTL GWAS1801797 (human)4e-09socioeconomic status101266995012669951Human
597109234GWAS1205308_Hself reported educational attainment QTL GWAS1205308 (human)3e-11self reported educational attainment101266995012669951Human
597109233GWAS1205307_Hself reported educational attainment QTL GWAS1205307 (human)9e-13self reported educational attainment101235310112353102Human
598082497GWAS1801796_Hsocioeconomic status QTL GWAS1801796 (human)7e-09socioeconomic status101235310112353102Human
628719902GWAS2628131_Hsystemic lupus erythematosus QTL GWAS2628131 (human)3e-08systemic lupus erythematosus101244613712446138Human
597102591GWAS1198665_Hschizophrenia, intelligence, self reported educational attainment QTL GWAS1198665 (human)2e-09schizophrenia, intelligence, self reported educational attainment101235310112353102Human
407277614GWAS926590_Hbody height QTL GWAS926590 (human)5e-85body height101278403412784035Human
407277612GWAS926588_Hbody height QTL GWAS926588 (human)1e-11body height101240608912406090Human
407277613GWAS926589_Hbody height QTL GWAS926589 (human)9e-09body height101250538512505386Human
628649749GWAS2557978_Hretinal nerve fibre layer thickness QTL GWAS2557978 (human)0.000003retinal nerve fibre layer thickness101247032012470321Human
598058453GWAS1777752_Hbody height QTL GWAS1777752 (human)5e-20body height101278645412786455Human
597165033GWAS1261107_Hlipid measurement QTL GWAS1261107 (human)0.000009lipid measurement101272968112729682Human
597234156GWAS1330230_Hobstructive sleep apnea QTL GWAS1330230 (human)0.000009obstructive sleep apnea101265644012656441Human
628381442GWAS2301666_Hsocioeconomic status QTL GWAS2301666 (human)1e-08socioeconomic status101235310112353102Human
597034475GWAS1130549_Hbody height QTL GWAS1130549 (human)5e-09body height101278645412786455Human
598064421GWAS1783720_Hbody height QTL GWAS1783720 (human)9e-09body height101277703812777039Human
628747259GWAS2655488_Heducational attainment QTL GWAS2655488 (human)2e-08educational attainment101235148912351490Human
628628474GWAS2536703_Hbipolar disorder QTL GWAS2536703 (human)0.000006bipolar disorder101248915912489160Human
628415984GWAS2324213_Hbody height QTL GWAS2324213 (human)5e-09body height101278645412786455Human
597025041GWAS1121115_Hacute myeloid leukemia QTL GWAS1121115 (human)0.0000005acute myeloid leukemia101281477612814777Human
628460016GWAS2368245_Hmathematical ability QTL GWAS2368245 (human)3e-11cognitive behavior trait (VT:0010450)101271471412714715Human
597025040GWAS1121114_Hacute myeloid leukemia QTL GWAS1121114 (human)1e-10acute myeloid leukemia101281477612814777Human
407041732GWAS690708_Hasymmetrical dimethylarginine measurement, serum dimethylarginine measurement QTL GWAS690708 (human)0.000009asymmetrical dimethylarginine measurement, serum dimethylarginine measurement101283088112830882Human
597355795GWAS1451869_Hbody height QTL GWAS1451869 (human)1e-11body height101240608912406090Human
406920392GWAS569368_Hsystemic lupus erythematosus QTL GWAS569368 (human)3e-08systemic lupus erythematosus101244613712446138Human
597311760GWAS1407834_Hvaginal microbiome measurement QTL GWAS1407834 (human)0.000007vaginal microbiome measurement101236845612368457Human
597355796GWAS1451870_Hbody height QTL GWAS1451870 (human)9e-09body height101250538512505386Human
597355797GWAS1451871_Hbody height QTL GWAS1451871 (human)5e-85body height101278403412784035Human
598064437GWAS1783736_Hblood zinc amount QTL GWAS1783736 (human)0.000002blood zinc amount101263561512635616Human
597252875GWAS1348949_Hpsychotic symptoms QTL GWAS1348949 (human)0.000007psychotic symptoms101279476412794765Human
628824558GWAS2732787_Haseptic loosening, revision of total knee arthroplasty QTL GWAS2732787 (human)0.0000001aseptic loosening, revision of total knee arthroplasty101249109712491098Human
406900949GWAS549925_Halpha-hydroxyisovalerate measurement QTL GWAS549925 (human)0.0000003alpha-hydroxyisovalerate measurement101259807312598074Human
597092608GWAS1188682_Hresponse to cyclophosphamide QTL GWAS1188682 (human)0.0000009response to cyclophosphamide101245574812455749Human
628460015GWAS2368244_Hmathematical ability QTL GWAS2368244 (human)1e-08cognitive behavior trait (VT:0010450)101235310112353102Human
597025039GWAS1121113_Hacute myeloid leukemia QTL GWAS1121113 (human)0.0000003acute myeloid leukemia101264957712649578Human
628916198GWAS2824427_Htrait in response to apixaban QTL GWAS2824427 (human)0.000002trait in response to apixaban101274789312747894Human
628701157GWAS2609386_Hvaginal microbiome measurement QTL GWAS2609386 (human)0.000007vaginal microbiome measurement101236845612368457Human
407154392GWAS803368_Hgut microbiome measurement QTL GWAS803368 (human)0.000007gut microbiome measurement101253866512538666Human
407280344GWAS929320_Hvaginal microbiome measurement QTL GWAS929320 (human)0.000007vaginal microbiome measurement101236845612368457Human
407013085GWAS662061_Hbone density QTL GWAS662061 (human)8e-09bone density101246386912463870Human
407040743GWAS689719_Hself reported educational attainment QTL GWAS689719 (human)0.000001self reported educational attainment101238936812389369Human
407262435GWAS911411_Hobstructive sleep apnea QTL GWAS911411 (human)0.000009obstructive sleep apnea101265644012656441Human
597141309GWAS1237383_Halpha-hydroxyisovalerate measurement QTL GWAS1237383 (human)0.0000003alpha-hydroxyisovalerate measurement101259807312598074Human
406907627GWAS556603_Hbipolar disorder QTL GWAS556603 (human)0.000006bipolar disorder101248915912489160Human
597112122GWAS1208196_Htea consumption measurement QTL GWAS1208196 (human)0.000002drinking behavior trait (VT:0001422)drink intake measurement (CMO:0000771)101263101112631012Human
406945519GWAS594495_Hgut microbiome measurement QTL GWAS594495 (human)0.000005gut microbiome measurement101239747712397478Human
628906450GWAS2814679_Hlabyrinthitis QTL GWAS2814679 (human)9e-08labyrinthitis101247991412479915Human
406962417GWAS611393_Hanorexia nervosa QTL GWAS611393 (human)0.000006anorexia nervosa101266057012660571Human
626444770GWAS2258703_Hfrailty measurement QTL GWAS2258703 (human)1e-09frailty measurement101264365412643655Human
597100322GWAS1196396_Hgut microbiome measurement QTL GWAS1196396 (human)0.000001gut microbiome measurement101247866412478665Human
597187886GWAS1283960_Hage at initiation of smoking QTL GWAS1283960 (human)7e-10age at initiation of smoking101270364912703650Human
598110481GWAS1819364_Holigodendroglioma QTL GWAS1819364 (human)1e-08oligodendroglioma101240684612406847Human
407304957GWAS953933_Hschizophrenia, intelligence, self reported educational attainment QTL GWAS953933 (human)2e-09schizophrenia, intelligence, self reported educational attainment101235310112353102Human
407320827GWAS969803_Haseptic loosening, revision of total knee arthroplasty QTL GWAS969803 (human)0.0000001aseptic loosening, revision of total knee arthroplasty101249109712491098Human
597603106GWAS1659966_Htype 2 diabetes mellitus QTL GWAS1659966 (human)5e-10type 2 diabetes mellitus101250671112506712Human
628653509GWAS2561738_Hage at assessment, pelvic organ prolapse QTL GWAS2561738 (human)0.000003age at assessment, pelvic organ prolapse101249337812493379Human
597129514GWAS1225588_Hbody height QTL GWAS1225588 (human)5e-20body height101278645412786455Human
598071652GWAS1790951_Hbody height QTL GWAS1790951 (human)3e-12body height101279484012794841Human
597058898GWAS1154972_HFEV/FVC ratio QTL GWAS1154972 (human)2e-09FEV/FVC ratio101269808312698084Human
407197827GWAS846803_Hcholate measurement QTL GWAS846803 (human)0.000004cholate measurement101245577112455772Human
597080926GWAS1177000_Hgut microbiome measurement QTL GWAS1177000 (human)0.000005gut microbiome measurement101239747712397478Human
628644272GWAS2552501_Hdelivery measurement, gut microbiome measurement QTL GWAS2552501 (human)4e-08delivery measurement, gut microbiome measurement101255467012554671Human
407380096GWAS1029072_Hacute myeloid leukemia QTL GWAS1029072 (human)1e-10acute myeloid leukemia101281477612814777Human
616388724GWAS1868966_Htrait in response to apixaban QTL GWAS1868966 (human)0.000002trait in response to apixaban101274789312747894Human
407380097GWAS1029073_Hacute myeloid leukemia QTL GWAS1029073 (human)0.0000005acute myeloid leukemia101281477612814777Human
406983311GWAS632287_Htea consumption measurement QTL GWAS632287 (human)0.000002tea consumption measurement101263101112631012Human
597311306GWAS1407380_Hvaginal microbiome measurement QTL GWAS1407380 (human)0.000007vaginal microbiome measurement101241894712418948Human
406945938GWAS594914_Hgut microbiome measurement QTL GWAS594914 (human)0.000001gut microbiome measurement101239489512394896Human
628609441GWAS2517670_Hlipid measurement QTL GWAS2517670 (human)0.000002lipid amount (VT:0001547)blood lipid measurement (CMO:0000050)101248014512480146Human
407163538GWAS812514_Hcolor vision disorder QTL GWAS812514 (human)0.0000001color vision disorder101278979512789796Human
628886439GWAS2794668_Htea consumption measurement QTL GWAS2794668 (human)4e-09drinking behavior trait (VT:0001422)drink intake measurement (CMO:0000771)101265090312650904Human
407017625GWAS666601_Hbody height QTL GWAS666601 (human)5e-20body height101278645412786455Human
597195076GWAS1291150_Hbone density QTL GWAS1291150 (human)8e-09bone density101246386912463870Human
598071675GWAS1790974_Hbody height QTL GWAS1790974 (human)2e-38body height101282239512822396Human
597323589GWAS1419663_Hbody height QTL GWAS1419663 (human)0.0000003body height101278271612782717Human
407025315GWAS674291_Hmitochondrial heteroplasmy measurement QTL GWAS674291 (human)4e-08mitochondrial heteroplasmy measurement101265644012656441Human
407109282GWAS758258_Hbody height QTL GWAS758258 (human)1e-12body height101277821212778213Human
597062515GWAS1158589_HBorderline personality disorder QTL GWAS1158589 (human)0.000003Borderline personality disorder101262313912623140Human
407090859GWAS739835_HHeadache QTL GWAS739835 (human)5e-10Headache101268406212684063Human
407177388GWAS826364_Hamblyopia QTL GWAS826364 (human)0.000005amblyopia101244037112440372Human
628879250GWAS2787479_Hinsomnia QTL GWAS2787479 (human)2e-09sleep behavior trait (VT:0001501)101271471412714715Human
597190004GWAS1286078_Hage at assessment, pelvic organ prolapse QTL GWAS1286078 (human)0.000003age at assessment, pelvic organ prolapse101249337812493379Human
628508550GWAS2416779_HHeadache, HOMA-IR QTL GWAS2416779 (human)1e-08Headache, HOMA-IRHomeostatic Model Assessment of Insulin Resistance (CMO:0003002)101267722112677222Human
628653961GWAS2562190_Hsystemic lupus erythematosus QTL GWAS2562190 (human)3e-08systemic lupus erythematosus101244599712445998Human
407178932GWAS827908_HFEV/FVC ratio QTL GWAS827908 (human)2e-09FEV/FVC ratio101269808312698084Human
628508548GWAS2416777_HHeadache, HOMA-B QTL GWAS2416777 (human)8e-09Headache, HOMA-BHomeostatic Model Assessment of Beta cell function (CMO:0003211)101267722112677222Human
597142371GWAS1238445_Heducational attainment QTL GWAS1238445 (human)4e-14educational attainment101269808312698084Human
597814614GWAS1682005_Hasymmetrical dimethylarginine measurement QTL GWAS1682005 (human)0.000009asymmetrical dimethylarginine measurement101283088112830882Human
407254852GWAS903828_Hvaginal microbiome measurement QTL GWAS903828 (human)0.000007vaginal microbiome measurement101241894712418948Human
597112478GWAS1208552_Htype 2 diabetes mellitus QTL GWAS1208552 (human)0.0000003type 2 diabetes mellitus101255588212555883Human
407251276GWAS900252_Htype 2 diabetes mellitus QTL GWAS900252 (human)0.0000003type 2 diabetes mellitus101255588212555883Human
625829981GWAS2250903_Hlabyrinthitis QTL GWAS2250903 (human)9e-08labyrinthitis101247991412479915Human
628428389GWAS2336618_Hintelligence QTL GWAS2336618 (human)0.000007intelligence101265456312654564Human
407130961GWAS779937_Hresponse to cyclophosphamide QTL GWAS779937 (human)0.0000009response to cyclophosphamide101245574812455749Human
628778095GWAS2686324_Hpsychotic symptoms QTL GWAS2686324 (human)0.000007psychotic symptoms101279476412794765Human
628885605GWAS2793834_Heducational attainment QTL GWAS2793834 (human)2e-18educational attainment101235310112353102Human
597030028GWAS1126102_Hcoronary aneurysm QTL GWAS1126102 (human)0.000005coronary aneurysm101260394212603943Human
628885606GWAS2793835_Heducational attainment QTL GWAS2793835 (human)4e-15educational attainment101239274312392744Human
628453481GWAS2361710_Hself reported educational attainment QTL GWAS2361710 (human)9e-13self reported educational attainment101235310112353102Human
628867687GWAS2775916_Halpha-hydroxyisovalerate measurement QTL GWAS2775916 (human)0.0000003alpha-hydroxyisovalerate measurement101259807312598074Human
628453482GWAS2361711_Hself reported educational attainment QTL GWAS2361711 (human)3e-11self reported educational attainment101266995012669951Human
407056227GWAS705203_Hself reported educational attainment QTL GWAS705203 (human)1e-12self reported educational attainment101235310112353102Human
407212389GWAS861365_Hbody height QTL GWAS861365 (human)0.0000003body height101278271612782717Human
616354718GWAS1839433_Hgut microbiome measurement, environmental exposure measurement QTL GWAS1839433 (human)3e-08gut microbiome measurement, environmental exposure measurement101265984712659848Human
616360863GWAS1845578_Hgut microbiome measurement, tobacco smoke exposure measurement QTL GWAS1845578 (human)0.000004gut microbiome measurement, tobacco smoke exposure measurement101246747712467478Human
597202620GWAS1298694_Hbody height QTL GWAS1298694 (human)2e-09body height101278403412784035Human
407029095GWAS678071_Hrespiratory quotient QTL GWAS678071 (human)0.0000006respiration trait (VT:0001943)101239338012393381Human
407198560GWAS847536_Hlipid measurement QTL GWAS847536 (human)0.000002lipid measurement101248014512480146Human
628727388GWAS2635617_Hfrailty measurement QTL GWAS2635617 (human)1e-09frailty measurement101264365412643655Human
407056228GWAS705204_Hself reported educational attainment QTL GWAS705204 (human)3e-09self reported educational attainment101266995012669951Human
406993258GWAS642234_Hage at initiation of smoking QTL GWAS642234 (human)7e-10age at initiation of smoking101270364912703650Human
597354674GWAS1450748_Hbody height QTL GWAS1450748 (human)3e-12body height101279484012794841Human
597354675GWAS1450749_Hbody height QTL GWAS1450749 (human)2e-38body height101282239512822396Human
616373142GWAS1853384_Hobsolete_blood copper measurement QTL GWAS1853384 (human)0.000004obsolete_blood copper measurement101260281512602816Human
628521563GWAS2429792_Hage of onset of Parkinson disease QTL GWAS2429792 (human)0.000005age of onset of Parkinson disease101236453412364535Human
628484186GWAS2392415_Hcoronary aneurysm QTL GWAS2392415 (human)0.000005coronary artery integrity trait (VT:0010746)101260394212603943Human
407191402GWAS840378_Hblood zinc measurement QTL GWAS840378 (human)0.000002blood zinc measurement101263561512635616Human
407142772GWAS791748_Hcoronary aneurysm QTL GWAS791748 (human)0.000005coronary aneurysm101260394212603943Human
406943090GWAS592066_Htrait in response to thiazide, QT interval QTL GWAS592066 (human)0.000006trait in response to thiazide, QT interval101263306212633063Human
628427328GWAS2335557_Hhousehold income QTL GWAS2335557 (human)5e-09household income101265057812650579Human
616361353GWAS1846068_Hgut microbiome measurement, breastfeeding duration QTL GWAS1846068 (human)2e-08gut microbiome measurement, breastfeeding duration101265984712659848Human
597040803GWAS1136877_Hbody height QTL GWAS1136877 (human)1e-12body height101277821212778213Human
616527240GWAS1923823_HIGF-1 measurement QTL GWAS1923823 (human)1e-11IGF-1 measurement101241777412417775Human
616490377GWAS1886960_Hblood copper level QTL GWAS1886960 (human)0.000004blood copper level101260281512602816Human
407192956GWAS841932_Hpsychotic symptoms QTL GWAS841932 (human)0.000007psychotic symptoms101279476412794765Human
628531276GWAS2439505_HIGF-1 measurement QTL GWAS2439505 (human)1e-11IGF-1 measurementblood insulin-like growth factor 1 level (CMO:0001297)101241777412417775Human
597189282GWAS1285356_Hsystemic lupus erythematosus QTL GWAS1285356 (human)3e-08systemic lupus erythematosus101244599712445998Human
407291770GWAS940746_Hbody height QTL GWAS940746 (human)3e-12body height101279484012794841Human
407291771GWAS940747_Hbody height QTL GWAS940747 (human)2e-38body height101282239512822396Human
597294297GWAS1390371_Haseptic loosening, revision of total knee arthroplasty QTL GWAS1390371 (human)0.0000001aseptic loosening, revision of total knee arthroplasty101249109712491098Human
407027463GWAS676439_Hbody composition measurement QTL GWAS676439 (human)0.000001body mass (VT:0001259)101239678412396785Human
628753469GWAS2661698_Holigodendroglioma QTL GWAS2661698 (human)1e-08oligodendroglioma101240684612406847Human
597185233GWAS1281307_Hmitochondrial heteroplasmy measurement QTL GWAS1281307 (human)4e-08mitochondrial heteroplasmy measurement101265644012656441Human
407362318GWAS1011294_Hinsomnia QTL GWAS1011294 (human)2e-09insomnia101271471412714715Human
407316749GWAS965725_Htea consumption measurement QTL GWAS965725 (human)4e-09tea consumption measurement101265090312650904Human
597160156GWAS1256230_Hlipid measurement QTL GWAS1256230 (human)0.000002lipid measurement101248014512480146Human
406970122GWAS619098_Htrait in response to efavirenz, virologic response measurement QTL GWAS619098 (human)0.000008trait in response to efavirenz, virologic response measurement101270706312707064Human
597162201GWAS1258275_Hparaxanthine measurement QTL GWAS1258275 (human)0.000006paraxanthine measurement101250285312502854Human
598081258GWAS1800557_Hsocioeconomic status QTL GWAS1800557 (human)7e-09socioeconomic status101267227012672271Human
596977351GWAS1096870_Hbody height QTL GWAS1096870 (human)9e-09body height101277703812777039Human
597160142GWAS1256216_Hcholate measurement QTL GWAS1256216 (human)0.000004cholate measurement101245577112455772Human
597620423GWAS1677283_HMeniere disease QTL GWAS1677283 (human)3e-11Meniere disease101265834112658342Human
598058751GWAS1778050_Hbody height QTL GWAS1778050 (human)2e-09body height101278403412784035Human
597293252GWAS1389326_Hblood copper measurement QTL GWAS1389326 (human)0.000004blood copper measurement101260281512602816Human
597184199GWAS1280273_Hmigraine disorder, Headache QTL GWAS1280273 (human)7e-09migraine disorder, Headache101265090312650904Human
598143175GWAS1829903_Hbone tissue density QTL GWAS1829903 (human)8e-09bone tissue density101246386912463870Human
407051552GWAS700528_Hlung disease severity measurement QTL GWAS700528 (human)0.0000007lung disease severity measurement101237166112371662Human
406930215GWAS579191_Heducational attainment QTL GWAS579191 (human)4e-14educational attainment101269808312698084Human
597072121GWAS1168195_HHeadache QTL GWAS1168195 (human)5e-10Headache101268406212684063Human
628794378GWAS2702607_Hage at initiation of smoking QTL GWAS2702607 (human)7e-10age at initiation of smoking101270364912703650Human
406977843GWAS626819_Hgut microbiome measurement QTL GWAS626819 (human)0.000001gut microbiome measurement101247866412478665Human
597278445GWAS1374519_Htea consumption measurement QTL GWAS1374519 (human)4e-09tea consumption measurement101265090312650904Human
628751872GWAS2660101_Hdementia QTL GWAS2660101 (human)0.000005dementia101238174512381746Human
628414989GWAS2323218_Hgut microbiome measurement QTL GWAS2323218 (human)0.000007gut microbiome measurement101253866512538666Human
616494530GWAS1891113_Hquinolinate measurement QTL GWAS1891113 (human)0.000009quinolinate measurement101255909712559098Human
628909569GWAS2817798_Hbody height QTL GWAS2817798 (human)2e-09body height101278403412784035Human
628641287GWAS2549516_Hgut microbiome measurement, breastfeeding duration QTL GWAS2549516 (human)2e-08lactation duration (VT:1000653)101265984712659848Human
617101129GWAS2118628_HIGF-1 measurement QTL GWAS2118628 (human)1e-11IGF-1 measurement101241777412417775Human
598041638GWAS1760937_Hretinal nerve fibre layer thickness QTL GWAS1760937 (human)0.000003retinal nerve fibre layer thickness101247032012470321Human
407134144GWAS783120_H3-hydroxy-1-methylpropylmercapturic acid measurement QTL GWAS783120 (human)0.00000043-hydroxy-1-methylpropylmercapturic acid measurement101244090812440909Human
628399344GWAS2307573_Hbody height QTL GWAS2307573 (human)5e-85body height101278403412784035Human
628825854GWAS2734083_Hblood copper level QTL GWAS2734083 (human)0.000004blood copper level101260281512602816Human
596951070GWAS1070589_Hdementia QTL GWAS1070589 (human)0.000005dementia101238174512381746Human
628760310GWAS2668539_Hmitochondrial heteroplasmy measurement QTL GWAS2668539 (human)4e-08mitochondrial heteroplasmy measurement101265644012656441Human
597298197GWAS1394271_Hblood zinc measurement QTL GWAS1394271 (human)0.000002blood zinc measurement101263561512635616Human
597296138GWAS1392212_Hbody height QTL GWAS1392212 (human)9e-09body height101277703812777039Human
628655341GWAS2563570_Hcolor vision disorder QTL GWAS2563570 (human)0.0000001color vision disorder101278979512789796Human
407111644GWAS760620_Hself reported educational attainment QTL GWAS760620 (human)9e-13self reported educational attainment101235310112353102Human
597261313GWAS1357387_Hdementia QTL GWAS1357387 (human)0.000005dementia101238174512381746Human
407111645GWAS760621_Hself reported educational attainment QTL GWAS760621 (human)3e-11self reported educational attainment101266995012669951Human
628399342GWAS2307571_Hbody height QTL GWAS2307571 (human)1e-11body height101240608912406090Human
628399343GWAS2307572_Hbody height QTL GWAS2307572 (human)9e-09body height101250538512505386Human
407017948GWAS666924_Hbody height QTL GWAS666924 (human)2e-09body height101278403412784035Human
628722393GWAS2630622_Hvaginal microbiome measurement QTL GWAS2630622 (human)0.000007vaginal microbiome measurement101241894712418948Human
628476629GWAS2384858_Hself reported educational attainment QTL GWAS2384858 (human)3e-09self reported educational attainment101266995012669951Human
628476628GWAS2384857_Hself reported educational attainment QTL GWAS2384857 (human)1e-12self reported educational attainment101235310112353102Human
406944739GWAS593715_Hgut microbiome measurement QTL GWAS593715 (human)0.000002gut microbiome measurement101248928712489288Human
597205564GWAS1301638_Hfrontal fibrosing alopecia QTL GWAS1301638 (human)0.000005frontal fibrosing alopecia101246231412462315Human
406991334GWAS640310_Hmigraine disorder, Headache QTL GWAS640310 (human)7e-09migraine disorder, Headache101265090312650904Human
628647647GWAS2555876_Hgut microbiome measurement, environmental exposure measurement QTL GWAS2555876 (human)3e-08gut microbiome measurement, environmental exposure measurement101265984712659848Human
407194093GWAS843069_Hparaxanthine measurement QTL GWAS843069 (human)0.000006paraxanthine measurement101250285312502854Human
628913876GWAS2822105_Hbody height QTL GWAS2822105 (human)5e-20body height101278645412786455Human
597275691GWAS1371765_Hinsomnia QTL GWAS1371765 (human)2e-09insomnia101271471412714715Human
598005265GWAS1724564_Hbody height QTL GWAS1724564 (human)5e-09body height101278645412786455Human
597214254GWAS1310328_Hmathematical ability QTL GWAS1310328 (human)1e-08mathematical ability101235310112353102Human
597214255GWAS1310329_Hmathematical ability QTL GWAS1310329 (human)3e-11mathematical ability101271471412714715Human
407196668GWAS845644_Heducational attainment QTL GWAS845644 (human)2e-08educational attainment101235148912351490Human
407056890GWAS705866_Hsystemic lupus erythematosus QTL GWAS705866 (human)3e-08systemic lupus erythematosus101244599712445998Human
628829378GWAS2737607_Hbody height QTL GWAS2737607 (human)9e-09body height101277703812777039Human
407185919GWAS834895_Hlipid measurement QTL GWAS834895 (human)0.000009lipid measurement101272968112729682Human
407271932GWAS920908_Hmigraine disorder, endometriosis QTL GWAS920908 (human)0.000001uterus integrity trait (VT:0010575)101281405812814059Human
406944762GWAS593738_Hgut microbiome measurement QTL GWAS593738 (human)0.000004gut microbiome measurement101248928712489288Human
628609227GWAS2517456_Hcholate measurement QTL GWAS2517456 (human)0.000004cholate measurement101245577112455772Human
616358780GWAS1843495_Hdelivery measurement, gut microbiome measurement QTL GWAS1843495 (human)4e-08delivery measurement, gut microbiome measurement101255467012554671Human
625815692GWAS2236614_Hbody height QTL GWAS2236614 (human)1e-08body height101277703812777039Human
597191770GWAS1287844_Hlung disease severity measurement QTL GWAS1287844 (human)0.0000007lung integrity trait (VT:0010906)101237166112371662Human
628987071GWAS2895300_HMeniere disease QTL GWAS2895300 (human)3e-11Meniere disease101265834112658342Human
626449042GWAS2262975_Htreatment-resistant hypertension QTL GWAS2262975 (human)0.000005treatment-resistant hypertension101282077812820779Human
597082195GWAS1178269_Hgut microbiome measurement QTL GWAS1178269 (human)0.000002gut microbiome measurement101248928712489288Human
597082719GWAS1178793_Hgut microbiome measurement QTL GWAS1178793 (human)0.000001gut microbiome measurement101239489512394896Human
407174543GWAS823519_HHeadache, HOMA-IR QTL GWAS823519 (human)1e-08Headache, HOMA-IR101267722112677222Human
628907187GWAS2815416_Htype 2 diabetes mellitus QTL GWAS2815416 (human)0.000003type 2 diabetes mellitus101248169812481699Human
598077556GWAS1796855_Hbone density QTL GWAS1796855 (human)8e-09bone density101246386912463870Human
407053719GWAS702695_Hhousehold income QTL GWAS702695 (human)5e-09household income101265057812650579Human
628612771GWAS2521000_Hbody height QTL GWAS2521000 (human)1e-08body height101277703812777039Human
628848301GWAS2756530_Hsmoking initiation QTL GWAS2756530 (human)1e-11behavior trait (VT:0010442)101269808312698084Human
628636835GWAS2545064_Hgut microbiome measurement, tobacco smoke exposure measurement QTL GWAS2545064 (human)0.000004gut microbiome measurement, tobacco smoke exposure measurement101246747712467478Human
628625573GWAS2533802_HFEV/FVC ratio QTL GWAS2533802 (human)2e-09lung capacity (VT:0001942)forced expiratory volume to forced vital capacity ratio (CMO:0000241)101269808312698084Human
597032565GWAS1128639_Hbipolar disorder QTL GWAS1128639 (human)0.000006bipolar disorder101248915912489160Human
407189922GWAS838898_Hblood copper measurement QTL GWAS838898 (human)0.000004blood copper measurement101260281512602816Human
628836502GWAS2744731_Hparaxanthine measurement QTL GWAS2744731 (human)0.000006paraxanthine measurement101250285312502854Human
628472472GWAS2380701_Hobstructive sleep apnea QTL GWAS2380701 (human)0.000009obstructive sleep apnea101265644012656441Human
628876949GWAS2785178_Hmigraine disorder, Headache QTL GWAS2785178 (human)7e-09migraine disorder, Headache101265090312650904Human
597094009GWAS1190083_H3-hydroxy-1-methylpropylmercapturic acid measurement QTL GWAS1190083 (human)0.00000043-hydroxy-1-methylpropylmercapturic acid measurement101244090812440909Human
628984466GWAS2892695_Hanaphylaxis QTL GWAS2892695 (human)3e-11anaphylaxis101258568112585682Human
628555399GWAS2463628_Hbody height QTL GWAS2463628 (human)0.0000003body height101278271612782717Human
406930867GWAS579843_Heducational attainment QTL GWAS579843 (human)2e-18educational attainment101235310112353102Human
407174070GWAS823046_HHeadache, HOMA-B QTL GWAS823046 (human)8e-09Headache, HOMA-B101267722112677222Human
597081698GWAS1177772_Hgut microbiome measurement QTL GWAS1177772 (human)0.000004gut microbiome measurement101248928712489288Human
598053969GWAS1773268_Hbody height QTL GWAS1773268 (human)9e-09body height101250538512505386Human
597345390GWAS1441464_Hcolor vision disorder QTL GWAS1441464 (human)0.0000001color vision disorder101278979512789796Human
598053970GWAS1773269_Hbody height QTL GWAS1773269 (human)5e-85body height101278403412784035Human
628905092GWAS2813321_HAlzheimer disease, family history of Alzheimer’s disease QTL GWAS2813321 (human)8e-09Alzheimer disease, family history of Alzheimer’s disease101238000312380004Human
406930872GWAS579848_Heducational attainment QTL GWAS579848 (human)4e-15educational attainment101239274312392744Human
628825222GWAS2733451_Hblood zinc amount QTL GWAS2733451 (human)0.000002blood zinc amount101263561512635616Human
597329511GWAS1425585_HHeadache, HOMA-IR QTL GWAS1425585 (human)1e-08Headache, HOMA-IR101267722112677222Human
597329509GWAS1425583_HHeadache, HOMA-B QTL GWAS1425583 (human)8e-09Headache, HOMA-B101267722112677222Human

Markers in Region
D10S2325  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10p13UniSTS
HuRef1012,706,205 - 12,706,347UniSTS
Marshfield Genetic Map1032.8UniSTS
Marshfield Genetic Map1032.8RGD
deCODE Assembly Map1031.07UniSTS
D10S1705  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371012,589,545 - 12,589,746UniSTSGRCh37
Build 361012,629,551 - 12,629,752RGDNCBI36
Celera1012,516,215 - 12,516,416RGD
Cytogenetic Map10p13UniSTS
HuRef1012,503,256 - 12,503,457UniSTS
Marshfield Genetic Map1032.8RGD
Marshfield Genetic Map1032.8UniSTS
Genethon Genetic Map1032.0UniSTS
TNG Radiation Hybrid Map106712.0UniSTS
GeneMap99-GB4 RH Map1095.14UniSTS
Whitehead-YAC Contig Map10 UniSTS
D10S1430  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371012,736,989 - 12,737,134UniSTSGRCh37
Build 361012,776,995 - 12,777,140RGDNCBI36
Celera1012,663,474 - 12,663,635RGD
Cytogenetic Map10p13UniSTS
Cytogenetic Map10pUniSTS
HuRef1012,650,207 - 12,650,368UniSTS
Marshfield Genetic Map1033.18RGD
Marshfield Genetic Map1033.18UniSTS
deCODE Assembly Map1031.07UniSTS
Whitehead-YAC Contig Map10 UniSTS
GDB:315097  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371012,547,736 - 12,547,985UniSTSGRCh37
Build 361012,587,742 - 12,587,991RGDNCBI36
Celera1012,476,917 - 12,477,166RGD
Cytogenetic Map10p13UniSTS
HuRef1012,464,044 - 12,464,293UniSTS
D10S2365  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371012,791,151 - 12,791,388UniSTSGRCh37
Build 361012,831,157 - 12,831,394RGDNCBI36
Celera1012,717,619 - 12,717,856RGD
Cytogenetic Map10p13UniSTS
HuRef1012,704,359 - 12,704,596UniSTS
Stanford-G3 RH Map10586.0UniSTS
GeneMap99-G3 RH Map10586.0UniSTS
SHGC-32225  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371012,425,918 - 12,426,067UniSTSGRCh37
Build 361012,465,924 - 12,466,073RGDNCBI36
Celera1012,355,087 - 12,355,236RGD
Cytogenetic Map10p13UniSTS
HuRef1012,342,209 - 12,342,358UniSTS
GeneMap99-GB4 RH Map1095.04UniSTS
Whitehead-RH Map1087.1UniSTS
NCBI RH Map10187.1UniSTS
GeneMap99-G3 RH Map10586.0UniSTS
SHGC-79342  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371012,549,423 - 12,549,757UniSTSGRCh37
Build 361012,589,429 - 12,589,763RGDNCBI36
Celera1012,478,604 - 12,478,938RGD
Cytogenetic Map10p13UniSTS
HuRef1012,465,731 - 12,466,065UniSTS
TNG Radiation Hybrid Map106683.0UniSTS
SHGC-84721  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371012,864,711 - 12,864,902UniSTSGRCh37
Build 361012,904,717 - 12,904,908RGDNCBI36
Celera1012,790,515 - 12,790,706RGD
Cytogenetic Map10p13UniSTS
HuRef1012,777,389 - 12,777,580UniSTS
TNG Radiation Hybrid Map106899.0UniSTS
D10S236E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371012,651,881 - 12,651,970UniSTSGRCh37
GRCh371012,651,810 - 12,651,989UniSTSGRCh37
GRCh371012,651,892 - 12,651,996UniSTSGRCh37
Build 361012,691,898 - 12,692,002RGDNCBI36
Celera1012,578,174 - 12,578,263UniSTS
Celera1012,578,103 - 12,578,282UniSTS
Celera1012,578,185 - 12,578,289RGD
Cytogenetic Map10p13UniSTS
HuRef1012,565,271 - 12,565,360UniSTS
HuRef1012,565,282 - 12,565,386UniSTS
HuRef1012,565,200 - 12,565,379UniSTS
TNG Radiation Hybrid Map106746.0UniSTS
Stanford-G3 RH Map10582.0UniSTS
NCBI RH Map10194.9UniSTS
GeneMap99-G3 RH Map10582.0UniSTS
SHGC-132068  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371012,791,109 - 12,791,398UniSTSGRCh37
Build 361012,831,115 - 12,831,404RGDNCBI36
Celera1012,717,577 - 12,717,866RGD
Cytogenetic Map10p13UniSTS
HuRef1012,704,317 - 12,704,606UniSTS
TNG Radiation Hybrid Map106855.0UniSTS
SHGC-146855  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371012,393,047 - 12,393,362UniSTSGRCh37
Build 361012,433,053 - 12,433,368RGDNCBI36
Celera1012,322,219 - 12,322,534RGD
Cytogenetic Map10p13UniSTS
HuRef1012,309,248 - 12,309,563UniSTS
TNG Radiation Hybrid Map1063651.0UniSTS
SHGC-148366  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371012,754,991 - 12,755,320UniSTSGRCh37
Build 361012,794,997 - 12,795,326RGDNCBI36
Celera1012,681,497 - 12,681,826RGD
Cytogenetic Map10p13UniSTS
HuRef1012,668,231 - 12,668,560UniSTS
TNG Radiation Hybrid Map106841.0UniSTS
SHGC-149390  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371012,820,886 - 12,821,199UniSTSGRCh37
Build 361012,860,892 - 12,861,205RGDNCBI36
Celera1012,746,716 - 12,747,029RGD
Cytogenetic Map10p13UniSTS
HuRef1012,733,795 - 12,734,108UniSTS
TNG Radiation Hybrid Map106869.0UniSTS
G17442  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371012,821,330 - 12,821,432UniSTSGRCh37
Build 361012,861,336 - 12,861,438RGDNCBI36
Celera1012,747,160 - 12,747,262RGD
Cytogenetic Map10p13UniSTS
HuRef1012,734,239 - 12,734,341UniSTS
SHGC-153341  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371012,640,772 - 12,641,119UniSTSGRCh37
Build 361012,680,778 - 12,681,125RGDNCBI36
Celera1012,567,067 - 12,567,414RGD
Cytogenetic Map10p13UniSTS
HuRef1012,554,129 - 12,554,476UniSTS
TNG Radiation Hybrid Map106782.0UniSTS
SHGC-141926  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371012,749,350 - 12,749,669UniSTSGRCh37
Build 361012,789,356 - 12,789,675RGDNCBI36
Celera1012,675,856 - 12,676,175RGD
Cytogenetic Map10p13UniSTS
HuRef1012,662,590 - 12,662,909UniSTS
TNG Radiation Hybrid Map106834.0UniSTS
SHGC-6785  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371012,602,662 - 12,602,797UniSTSGRCh37
Build 361012,642,668 - 12,642,803RGDNCBI36
Celera1012,528,949 - 12,529,084RGD
Cytogenetic Map10p13UniSTS
HuRef1012,515,992 - 12,516,127UniSTS
RH47896  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371012,744,093 - 12,744,218UniSTSGRCh37
Build 361012,784,099 - 12,784,224RGDNCBI36
Celera1012,670,600 - 12,670,725RGD
Cytogenetic Map10p13UniSTS
HuRef1012,657,334 - 12,657,459UniSTS
GeneMap99-GB4 RH Map1095.14UniSTS
NCBI RH Map10202.5UniSTS
D11S2560  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10p12.1-p11.2UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map8q21.13UniSTS
Cytogenetic Map18p11.22UniSTS
Cytogenetic Map9p13.3-p12UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map8p22-p21UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map4q25UniSTS
Cytogenetic Map12p13.33UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map5q23UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map3p21.2UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map6q27UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map2q12.1UniSTS
Cytogenetic Map9q13-q21UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map8q11.21UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map10q23.2UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map1p32UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map3q26.2-q27UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic MapXp11.2UniSTS
Cytogenetic Map20q11.2UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map4p15.32UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map1p36.11-p34.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map18p11.32UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map14q13.2UniSTS
Cytogenetic Map8q12.1UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map18q12.3UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map8q24.21UniSTS
Cytogenetic Map12q22-q23.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map1q23UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map7p14-p13UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map6q22-q23UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map11q13.1-q13.3UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map6p24UniSTS
Cytogenetic Map10q25UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map9q31.1UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map3p26.1-p25.1UniSTS
Cytogenetic Map6q16.3UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic MapXq27.1UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map3q25.31UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map14q32.32UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map6q14.1UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map1p35-p34UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map3p25.2UniSTS
Cytogenetic Map5q11UniSTS
D10S236E  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10p13UniSTS
D10S236E  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10p13UniSTS
TNG Radiation Hybrid Map106746.0UniSTS
Stanford-G3 RH Map10582.0UniSTS
NCBI RH Map10194.9UniSTS
GeneMap99-G3 RH Map10582.0UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2251 4971 1725 2351 5 624 1951 465 2268 7302 6468 53 3733 1 852 1744 1617 174 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001351032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_020397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_153498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006717482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006717483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017016438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024448087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047425537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054366366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054366367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054366368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054366369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054366370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054366371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA601559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AA903749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB081726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF286366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI821714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK097377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK289393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL391314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL512284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL512783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL731559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV760219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC035745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC073155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM930742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ059621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU542765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB114811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF444962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HH961742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY156642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY168807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF510334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY966262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000378845   ⟹   ENSP00000368122
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1012,349,733 - 12,826,143 (+)Ensembl
Ensembl Acc Id: ENST00000487696
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1012,349,652 - 12,666,949 (+)Ensembl
Ensembl Acc Id: ENST00000615792   ⟹   ENSP00000478861
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1012,760,576 - 12,829,736 (+)Ensembl
Ensembl Acc Id: ENST00000619168   ⟹   ENSP00000478874
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1012,349,547 - 12,835,545 (+)Ensembl
RefSeq Acc Id: NM_001351032   ⟹   NP_001337961
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381012,388,982 - 12,826,464 (+)NCBI
T2T-CHM13v2.01012,400,227 - 12,840,845 (+)NCBI
Sequence:
RefSeq Acc Id: NM_020397   ⟹   NP_065130
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381012,349,547 - 12,826,464 (+)NCBI
GRCh371012,391,583 - 12,871,735 (+)ENTREZGENE
Build 361012,431,589 - 12,908,148 (+)NCBI Archive
HuRef1012,307,786 - 12,784,748 (+)ENTREZGENE
CHM1_11012,391,496 - 12,868,491 (+)NCBI
T2T-CHM13v2.01012,360,834 - 12,840,845 (+)NCBI
Sequence:
RefSeq Acc Id: NM_153498   ⟹   NP_705718
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381012,349,547 - 12,835,545 (+)NCBI
GRCh371012,391,583 - 12,871,735 (+)ENTREZGENE
Build 361012,431,589 - 12,911,741 (+)NCBI Archive
HuRef1012,307,786 - 12,784,748 (+)ENTREZGENE
CHM1_11012,391,496 - 12,877,567 (+)NCBI
T2T-CHM13v2.01012,360,834 - 12,849,903 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006717482   ⟹   XP_006717545
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381012,349,547 - 12,835,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006717483   ⟹   XP_006717546
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381012,349,547 - 12,835,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519591   ⟹   XP_011517893
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381012,388,982 - 12,835,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519592   ⟹   XP_011517894
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381012,664,475 - 12,835,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519593   ⟹   XP_011517895
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381012,663,234 - 12,835,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519595   ⟹   XP_011517897
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381012,650,082 - 12,835,545 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047425537   ⟹   XP_047281493
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381012,388,982 - 12,835,545 (+)NCBI
RefSeq Acc Id: XM_054366366   ⟹   XP_054222341
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01012,399,027 - 12,849,903 (+)NCBI
RefSeq Acc Id: XM_054366367   ⟹   XP_054222342
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01012,360,834 - 12,849,903 (+)NCBI
RefSeq Acc Id: XM_054366368   ⟹   XP_054222343
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01012,360,834 - 12,849,903 (+)NCBI
RefSeq Acc Id: XM_054366369   ⟹   XP_054222344
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01012,677,492 - 12,849,903 (+)NCBI
RefSeq Acc Id: XM_054366370   ⟹   XP_054222345
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01012,676,252 - 12,849,903 (+)NCBI
RefSeq Acc Id: XM_054366371   ⟹   XP_054222346
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01012,663,100 - 12,849,903 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001337961 (Get FASTA)   NCBI Sequence Viewer  
  NP_065130 (Get FASTA)   NCBI Sequence Viewer  
  NP_705718 (Get FASTA)   NCBI Sequence Viewer  
  XP_006717545 (Get FASTA)   NCBI Sequence Viewer  
  XP_006717546 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517893 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517894 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517895 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517897 (Get FASTA)   NCBI Sequence Viewer  
  XP_047281493 (Get FASTA)   NCBI Sequence Viewer  
  XP_054222341 (Get FASTA)   NCBI Sequence Viewer  
  XP_054222342 (Get FASTA)   NCBI Sequence Viewer  
  XP_054222343 (Get FASTA)   NCBI Sequence Viewer  
  XP_054222344 (Get FASTA)   NCBI Sequence Viewer  
  XP_054222345 (Get FASTA)   NCBI Sequence Viewer  
  XP_054222346 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG00534 (Get FASTA)   NCBI Sequence Viewer  
  AAH35745 (Get FASTA)   NCBI Sequence Viewer  
  ACA05958 (Get FASTA)   NCBI Sequence Viewer  
  ACA05959 (Get FASTA)   NCBI Sequence Viewer  
  ACA05960 (Get FASTA)   NCBI Sequence Viewer  
  BAC19846 (Get FASTA)   NCBI Sequence Viewer  
  BAF82082 (Get FASTA)   NCBI Sequence Viewer  
  CBX51344 (Get FASTA)   NCBI Sequence Viewer  
  EAW86314 (Get FASTA)   NCBI Sequence Viewer  
  EAW86315 (Get FASTA)   NCBI Sequence Viewer  
  EAW86316 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000368122
  ENSP00000368122.1
  ENSP00000478874
  ENSP00000478874.1
GenBank Protein Q8IU85 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_705718   ⟸   NM_153498
- Peptide Label: isoform 2
- UniProtKB: B0YIY0 (UniProtKB/Swiss-Prot),   Q9HD31 (UniProtKB/Swiss-Prot),   Q8IU85 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_065130   ⟸   NM_020397
- Peptide Label: isoform 1
- UniProtKB: Q5SQQ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006717546   ⟸   XM_006717483
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006717545   ⟸   XM_006717482
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011517893   ⟸   XM_011519591
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011517897   ⟸   XM_011519595
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011517895   ⟸   XM_011519593
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011517894   ⟸   XM_011519592
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: NP_001337961   ⟸   NM_001351032
- Peptide Label: isoform 3
- Sequence:
Ensembl Acc Id: ENSP00000368122   ⟸   ENST00000378845
Ensembl Acc Id: ENSP00000478861   ⟸   ENST00000615792
Ensembl Acc Id: ENSP00000478874   ⟸   ENST00000619168
RefSeq Acc Id: XP_047281493   ⟸   XM_047425537
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054222343   ⟸   XM_054366368
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054222342   ⟸   XM_054366367
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054222341   ⟸   XM_054366366
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054222346   ⟸   XM_054366371
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054222345   ⟸   XM_054366370
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054222344   ⟸   XM_054366369
- Peptide Label: isoform X4
Protein Domains
Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8IU85-F1-model_v2 AlphaFold Q8IU85 1-385 view protein structure

Promoters
RGD ID:7216997
Promoter ID:EPDNEW_H14244
Type:initiation region
Name:CAMK1D_2
Description:calcium/calmodulin dependent protein kinase ID
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H14245  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381012,349,576 - 12,349,636EPDNEW
RGD ID:7216999
Promoter ID:EPDNEW_H14245
Type:initiation region
Name:CAMK1D_1
Description:calcium/calmodulin dependent protein kinase ID
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H14244  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381012,349,711 - 12,349,771EPDNEW
RGD ID:6787435
Promoter ID:HG_KWN:8610
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000378845,   OTTHUMT00000046820,   OTTHUMT00000046822
Position:
Human AssemblyChrPosition (strand)Source
Build 361012,430,826 - 12,431,712 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:19341 AgrOrtholog
COSMIC CAMK1D COSMIC
Ensembl Genes ENSG00000183049 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000378845 ENTREZGENE
  ENST00000378845.5 UniProtKB/Swiss-Prot
  ENST00000619168 ENTREZGENE
  ENST00000619168.5 UniProtKB/Swiss-Prot
Gene3D-CATH Phosphorylase Kinase, domain 1 UniProtKB/Swiss-Prot
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot
GTEx ENSG00000183049 GTEx
HGNC ID HGNC:19341 ENTREZGENE
Human Proteome Map CAMK1D Human Proteome Map
InterPro Kinase-like_dom_sf UniProtKB/Swiss-Prot
  Prot_kinase_dom UniProtKB/Swiss-Prot
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot
KEGG Report hsa:57118 UniProtKB/Swiss-Prot
NCBI Gene 57118 ENTREZGENE
OMIM 607957 OMIM
PANTHER SERINE/THREONINE-PROTEIN KINASE UniProtKB/Swiss-Prot
Pfam Pkinase UniProtKB/Swiss-Prot
PharmGKB PA134992438 PharmGKB
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot
SMART S_TKc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot
UniProt B0YIY0 ENTREZGENE
  KCC1D_HUMAN UniProtKB/Swiss-Prot
  Q5SQQ7 ENTREZGENE, UniProtKB/TrEMBL
  Q8IU85 ENTREZGENE
  Q9HD31 ENTREZGENE
UniProt Secondary B0YIY0 UniProtKB/Swiss-Prot
  Q9HD31 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-08 CAMK1D  calcium/calmodulin dependent protein kinase ID  CAMK1D  calcium/calmodulin-dependent protein kinase ID  Symbol and/or name change 5135510 APPROVED