Alc17 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Alc17 (Alcohol consumption QTL 17) Rattus norvegicus

Symbol: Alc17
Name: Alcohol consumption QTL 17
RGD ID: 738023
Previously known as: Consumption of Ethanol 5%; Coet5a
Trait: consumption behavior trait   (VT:0002069)    
Measurement Type: ethanol drink intake rate to body weight ratio   (CMO:0001616)    
LOD Score: 3.1
P Value: 0.003
Variance: 38.0
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.261 - 27,574,569RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.061 - 35,623,029RGD_MAPPER_PIPELINERnor_6.0
Rnor_5.06580,292 - 45,580,292RGD_MAPPER_PIPELINERnor_5.0
RGSC_v3.461 - 35,786,687RGD_MAPPER_PIPELINERGSC_v3.4
RGSC_v3.160 - 35,786,687RGD
Cross Type: intercross
Strains Crossed: WKY HEP 



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method
scale  (IDA)

Vertebrate Trait

Rat Strain
HEP  (IEA)
WKY  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genetics of behaviour: phenotypic and molecular study of rats derived from high- and low-alcohol consuming lines. Terenina-Rigaldie E, etal., Pharmacogenetics 2003 Sep;13(9):543-54.
Related QTLs

Related QTL Description Reference
Sach4 interacts with RGD:731213
Sach5 interacts with RGD:731213
Alc14 interacts with RGD:731213
Alc15 interacts with RGD:731213
Alc16 interacts with RGD:731213


Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Peak: (D6Rat46)
Rat AssemblyChrPosition (strand)Source
mRatBN7.265,074,497 - 5,074,641 (-)MAPPER
Rnor_6.0613,122,958 - 13,123,101NCBI
Rnor_5.0623,080,221 - 23,080,364UniSTS
RGSC_v3.4613,286,615 - 13,286,759RGD
RGSC_v3.4613,286,616 - 13,286,759UniSTS
Celera64,866,677 - 4,866,820UniSTS
RGSC_v3.1613,286,615 - 13,286,759RGD
SHRSP x BN Map61.1499UniSTS
SHRSP x BN Map61.1499RGD


Additional Information

Database Acc Id Source(s)
NCBI Gene Alc17

RGD Curation Notes
Note Type Note Reference
qtl_cross_pair WKYxHEP  
qtl_cross_type intercross  
qtl_general no apparent influence of sex or sex-genotype interaction 731213
qtl_map same locus also maps a suggestive QTL for consumption of 7.5 mM saccharine (Sach5, LOD = 3.9) 731213