Mtmr9 (myotubularin related protein 9) - Rat Genome Database

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Gene: Mtmr9 (myotubularin related protein 9) Rattus norvegicus
Analyze
Symbol: Mtmr9
Name: myotubularin related protein 9
RGD ID: 628840
Description: Predicted to enable enzyme regulator activity and protein phosphatase binding activity. Predicted to be involved in several processes, including phosphatidylinositol dephosphorylation; protein stabilization; and regulation of dephosphorylation. Predicted to be part of protein-containing complex. Predicted to be active in cytoplasm. Orthologous to human MTMR9 (myotubularin related protein 9); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC94471; myotubularin-related protein 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81541,945,102 - 41,967,136 (-)NCBIGRCr8
mRatBN7.21537,769,161 - 37,791,195 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1537,769,078 - 37,791,244 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1539,621,641 - 39,643,707 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01540,772,304 - 40,794,366 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01539,229,776 - 39,251,810 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01546,697,262 - 46,719,296 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1546,693,383 - 46,719,252 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01550,459,291 - 50,481,325 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41542,787,644 - 42,809,678 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11542,803,275 - 42,824,990 (-)NCBI
Celera1537,452,010 - 37,473,964 (-)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Association of variations in the FTO, SCG3 and MTMR9 genes with metabolic syndrome in a Japanese population. Hotta K, etal., J Hum Genet. 2011 Sep;56(9):647-51. doi: 10.1038/jhg.2011.74. Epub 2011 Jul 28.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Characterization of myotubularin-related protein 7 and its binding partner, myotubularin-related protein 9. Mochizuki Y and Majerus PW, Proc Natl Acad Sci U S A 2003 Aug 19;100(17):9768-73. Epub 2003 Jul 30.
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12393805   PMID:12477932   PMID:16787938   PMID:22647598  


Genomics

Comparative Map Data
Mtmr9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81541,945,102 - 41,967,136 (-)NCBIGRCr8
mRatBN7.21537,769,161 - 37,791,195 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1537,769,078 - 37,791,244 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1539,621,641 - 39,643,707 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01540,772,304 - 40,794,366 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01539,229,776 - 39,251,810 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01546,697,262 - 46,719,296 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1546,693,383 - 46,719,252 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01550,459,291 - 50,481,325 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41542,787,644 - 42,809,678 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11542,803,275 - 42,824,990 (-)NCBI
Celera1537,452,010 - 37,473,964 (-)NCBICelera
Cytogenetic Map15p12NCBI
MTMR9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38811,284,816 - 11,339,526 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl811,284,816 - 11,328,146 (+)EnsemblGRCh38hg38GRCh38
GRCh37811,142,325 - 11,185,655 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36811,179,410 - 11,223,065 (+)NCBINCBI36Build 36hg18NCBI36
Build 34811,179,409 - 11,223,062NCBI
Celera810,270,023 - 10,313,681 (+)NCBICelera
Cytogenetic Map8p23.1NCBI
HuRef810,072,186 - 10,115,823 (+)NCBIHuRef
CHM1_1811,207,294 - 11,250,949 (+)NCBICHM1_1
T2T-CHM13v2.088,398,321 - 8,454,196 (-)NCBIT2T-CHM13v2.0
Mtmr9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391463,757,100 - 63,781,402 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1463,757,100 - 63,781,431 (-)EnsemblGRCm39 Ensembl
GRCm381463,519,651 - 63,544,027 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1463,519,651 - 63,543,982 (-)EnsemblGRCm38mm10GRCm38
MGSCv371464,142,447 - 64,162,790 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361462,477,720 - 62,498,063 (-)NCBIMGSCv36mm8
Celera1461,293,239 - 61,313,581 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.32NCBI
Mtmr9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540352,689,101 - 52,732,354 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540352,689,101 - 52,732,354 (+)NCBIChiLan1.0ChiLan1.0
MTMR9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2727,750,881 - 27,815,016 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan183,777,188 - 3,841,281 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v087,864,461 - 7,918,324 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
MTMR9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12526,571,383 - 26,624,948 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2526,575,932 - 26,624,954 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2527,227,205 - 27,280,925 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02526,725,336 - 26,778,579 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2526,725,363 - 26,778,585 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12526,679,494 - 26,732,414 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02526,574,592 - 26,627,786 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02526,727,118 - 26,780,650 (-)NCBIUU_Cfam_GSD_1.0
Mtmr9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049435,505,589 - 5,549,796 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366753,036,422 - 3,080,756 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366753,035,221 - 3,080,419 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTMR9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1414,458,042 - 14,504,449 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11414,457,974 - 14,504,453 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MTMR9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.187,778,065 - 7,821,433 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl87,783,100 - 7,821,103 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605234,607,842 - 34,651,661 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtmr9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475824,994,164 - 25,027,682 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475824,993,783 - 25,033,130 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mtmr9
15 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:232
Count of miRNA genes:163
Interacting mature miRNAs:180
Transcripts:ENSRNOT00000015452
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat

Markers in Region
RH141743  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21537,769,203 - 37,769,403 (+)MAPPERmRatBN7.2
Rnor_6.01546,697,305 - 46,697,504NCBIRnor6.0
Rnor_5.01550,459,334 - 50,459,533UniSTSRnor5.0
RGSC_v3.41542,787,687 - 42,787,886UniSTSRGSC3.4
Celera1537,452,053 - 37,452,252UniSTS
Cytogenetic Map15p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000015452   ⟹   ENSRNOP00000015452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1537,769,078 - 37,791,244 (-)Ensembl
Rnor_6.0 Ensembl1546,693,383 - 46,719,252 (-)Ensembl
RefSeq Acc Id: NM_001005761   ⟹   NP_001005761
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81541,945,102 - 41,967,136 (-)NCBI
mRatBN7.21537,769,161 - 37,791,195 (-)NCBI
Rnor_6.01546,697,262 - 46,719,296 (-)NCBI
Rnor_5.01550,459,291 - 50,481,325 (-)NCBI
RGSC_v3.41542,787,644 - 42,809,678 (-)RGD
Celera1537,452,010 - 37,473,964 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001005761 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83644 (Get FASTA)   NCBI Sequence Viewer  
  AAN03959 (Get FASTA)   NCBI Sequence Viewer  
  EDL85324 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000015452.4
RefSeq Acc Id: NP_001005761   ⟸   NM_001005761
- UniProtKB: Q5XIN4 (UniProtKB/TrEMBL),   A6K6G4 (UniProtKB/TrEMBL),   Q8K3W5 (UniProtKB/TrEMBL),   F7F3L9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000015452   ⟸   ENSRNOT00000015452
Protein Domains
Myotubularin phosphatase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIN4-F1-model_v2 AlphaFold Q5XIN4 1-549 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699779
Promoter ID:EPDNEW_R10301
Type:initiation region
Name:Mtmr9_1
Description:myotubularin related protein 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R10302  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01546,719,104 - 46,719,164EPDNEW
RGD ID:13699780
Promoter ID:EPDNEW_R10302
Type:initiation region
Name:Mtmr9_2
Description:myotubularin related protein 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R10301  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01546,719,349 - 46,719,409EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628840 AgrOrtholog
BioCyc Gene G2FUF-13420 BioCyc
Ensembl Genes ENSRNOG00000011560 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015452.6 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134963 IMAGE-MGC_LOAD
InterPro Myotub-related UniProtKB/TrEMBL
  Myotubularin_fam UniProtKB/TrEMBL
  PH_like_dom UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
KEGG Report rno:282584 UniProtKB/TrEMBL
MGC_CLONE MGC:94471 IMAGE-MGC_LOAD
NCBI Gene 282584 ENTREZGENE
PANTHER MYOTUBULARIN-RELATED PROTEIN 9 UniProtKB/TrEMBL
  PTHR10807 UniProtKB/TrEMBL
Pfam Myotub-related UniProtKB/TrEMBL
  PH-GRAM_MTMR6-like UniProtKB/TrEMBL
PhenoGen Mtmr9 PhenoGen
PROSITE PPASE_MYOTUBULARIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011560 RatGTEx
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF52799 UniProtKB/TrEMBL
UniProt A6K6G4 ENTREZGENE, UniProtKB/TrEMBL
  F7F3L9 ENTREZGENE, UniProtKB/TrEMBL
  Q5XIN4 ENTREZGENE
  Q8K3W5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q5XIN4 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Mtmr9  myotubularin related protein 9      Symbol and Name status set to approved 625702 APPROVED
2003-02-27 Mtmr9  myotubularin related protein 9      Symbol and Name status set to provisional 70820 PROVISIONAL