MTMR9 (myotubularin related protein 9) - Rat Genome Database

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Gene: MTMR9 (myotubularin related protein 9) Pan paniscus
Analyze
Symbol: MTMR9
Name: myotubularin related protein 9
RGD ID: 11882439
Description: ENCODES a protein that exhibits enzyme regulator activity (ortholog); INVOLVED IN negative regulation of autophagy (inferred); phosphatidylinositol dephosphorylation (inferred); protein stabilization (inferred); ASSOCIATED WITH genetic disease (ortholog); Metabolic Syndrome (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (inferred); membrane (inferred); protein-containing complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myotubularin-related protein 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2727,750,881 - 27,815,016 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan183,777,188 - 3,841,281 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v087,864,461 - 7,918,324 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MTMR9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2727,750,881 - 27,815,016 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan183,777,188 - 3,841,281 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v087,864,461 - 7,918,324 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
MTMR9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38811,284,816 - 11,339,526 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl811,284,816 - 11,328,146 (+)EnsemblGRCh38hg38GRCh38
GRCh37811,142,325 - 11,185,655 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36811,179,410 - 11,223,065 (+)NCBINCBI36Build 36hg18NCBI36
Build 34811,179,409 - 11,223,062NCBI
Celera810,270,023 - 10,313,681 (+)NCBICelera
Cytogenetic Map8p23.1NCBI
HuRef810,072,186 - 10,115,823 (+)NCBIHuRef
CHM1_1811,207,294 - 11,250,949 (+)NCBICHM1_1
T2T-CHM13v2.088,398,321 - 8,454,196 (-)NCBIT2T-CHM13v2.0
Mtmr9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391463,757,100 - 63,781,402 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1463,757,100 - 63,781,431 (-)EnsemblGRCm39 Ensembl
GRCm381463,519,651 - 63,544,027 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1463,519,651 - 63,543,982 (-)EnsemblGRCm38mm10GRCm38
MGSCv371464,142,447 - 64,162,790 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361462,477,720 - 62,498,063 (-)NCBIMGSCv36mm8
Celera1461,293,239 - 61,313,581 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.32NCBI
Mtmr9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81541,945,102 - 41,967,136 (-)NCBIGRCr8
mRatBN7.21537,769,161 - 37,791,195 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1537,769,078 - 37,791,244 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1539,621,641 - 39,643,707 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01540,772,304 - 40,794,366 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01539,229,776 - 39,251,810 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01546,697,262 - 46,719,296 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1546,693,383 - 46,719,252 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01550,459,291 - 50,481,325 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41542,787,644 - 42,809,678 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11542,803,275 - 42,824,990 (-)NCBI
Celera1537,452,010 - 37,473,964 (-)NCBICelera
Cytogenetic Map15p12NCBI
Mtmr9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540352,689,101 - 52,732,354 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540352,689,101 - 52,732,354 (+)NCBIChiLan1.0ChiLan1.0
MTMR9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12526,571,383 - 26,624,948 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2526,575,932 - 26,624,954 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2527,227,205 - 27,280,925 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02526,725,336 - 26,778,579 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2526,725,363 - 26,778,585 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12526,679,494 - 26,732,414 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02526,574,592 - 26,627,786 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02526,727,118 - 26,780,650 (-)NCBIUU_Cfam_GSD_1.0
Mtmr9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049435,505,589 - 5,549,796 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366753,036,422 - 3,080,756 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366753,035,221 - 3,080,419 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTMR9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1414,458,042 - 14,504,449 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11414,457,974 - 14,504,453 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MTMR9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.187,778,065 - 7,821,433 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl87,783,100 - 7,821,103 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605234,607,842 - 34,651,661 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtmr9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475824,994,164 - 25,027,682 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475824,993,783 - 25,033,130 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_003805324   ⟹   XP_003805372
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2727,750,881 - 27,795,407 (+)NCBI
NHGRI_mPanPan183,777,188 - 3,821,698 (+)NCBI
Mhudiblu_PPA_v087,874,799 - 7,918,323 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014343670   ⟹   XP_014199156
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2727,750,881 - 27,807,368 (+)NCBI
NHGRI_mPanPan183,777,188 - 3,841,281 (+)NCBI
Mhudiblu_PPA_v087,864,461 - 7,918,324 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034965618   ⟹   XP_034821509
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2727,752,557 - 27,795,407 (+)NCBI
NHGRI_mPanPan183,778,871 - 3,821,698 (+)NCBI
Mhudiblu_PPA_v087,874,799 - 7,917,653 (-)NCBI
RefSeq Acc Id: XR_010112908
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2727,750,881 - 27,815,016 (+)NCBI
RefSeq Acc Id: XR_010112909
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2727,750,881 - 27,815,016 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003805372 (Get FASTA)   NCBI Sequence Viewer  
  XP_014199156 (Get FASTA)   NCBI Sequence Viewer  
  XP_034821509 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000008224
  ENSPPAP00000008224.1
Reference Protein Sequences
RefSeq Acc Id: XP_014199156   ⟸   XM_014343670
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003805372   ⟸   XM_003805324
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZTD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034821509   ⟸   XM_034965618
- Peptide Label: isoform X3
Protein Domains
Myotubularin phosphatase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027349 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000030859.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro Myotubularin-like_Pase_dom UniProtKB/TrEMBL
  Myotubularin_fam UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
KEGG Report pps:100991755 UniProtKB/TrEMBL
NCBI Gene MTMR9 ENTREZGENE
PANTHER MYOTUBULARIN-RELATED PROTEIN 9 UniProtKB/TrEMBL
  PTHR10807 UniProtKB/TrEMBL
Pfam Myotub-related UniProtKB/TrEMBL
  PH-GRAM_MTMR6-like UniProtKB/TrEMBL
PROSITE PPASE_MYOTUBULARIN UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF52799 UniProtKB/TrEMBL
UniProt A0A2R8ZTD2 ENTREZGENE, UniProtKB/TrEMBL