Abi1 (abl-interactor 1) - Rat Genome Database

Name: Abi1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Abi1 (abl-interactor 1) Rattus norvegicus

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Symbol:

Abi1

Name:

abl-interactor 1

RGD ID:

621008

Description:

Predicted to enable SH3 domain binding activity; protein tyrosine kinase activator activity; and signaling adaptor activity. Involved in postsynapse to nucleus signaling pathway. Is active in glutamatergic synapse and postsynaptic density. Orthologous to human ABI1 (abl interactor 1); PARTICIPATES IN E-cadherin signaling pathway; platelet-derived growth factor signaling pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

abelson interactor 1; abi-1; abl interactor 1; E3b1; eps8 binding protein (e3B1), alternatively spliced; eps8 SH3 domain-binding protein; eps8-binding protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ABI1 (abl interactor 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Abi1 (abl interactor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Abi1 (abl interactor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ABI1 (abl interactor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ABI1 (abl interactor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Abi1 (abl interactor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ABI1 (abl interactor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ABI1 (abl interactor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Abi1 (abl interactor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	OR4M1 (olfactory receptor family 4 subfamily M member 1)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Abi1 (abl interactor 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ABI1 (abl interactor 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	abi1b (abl-interactor 1b)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	abi1a (abl-interactor 1a)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Abi	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	abi-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	abi1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	abi3	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	90,006,917 - 90,088,002 (-)	NCBI		GRCr8
mRatBN7.2	17	85,098,837 - 85,179,829 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	85,098,550 - 85,179,792 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	88,583,073 - 88,664,013 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	92,418,465 - 92,499,400 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	86,435,255 - 86,516,184 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	89,951,662 - 90,033,334 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	89,951,752 - 90,033,328 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	91,617,052 - 91,698,739 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	96,576,331 - 96,648,752 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	96,587,163 - 96,659,522 (-)	NCBI
Celera	17	83,715,811 - 83,796,579 (+)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chemical and Drug Induced Liver Injury (ISO)

primary coenzyme Q10 deficiency 2 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,4-dinitrotoluene (EXP)

3,3',5,5'-tetrabromobisphenol A (EXP)

3-chloropropane-1,2-diol (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (EXP)

5-fluorouracil (ISO)

acrolein (ISO)

acrylamide (ISO)

actinomycin D (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

ammonium chloride (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

bortezomib (ISO)

Brodifacoum (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carnosic acid (ISO)

chloroprene (EXP)

chlorpyrifos (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

coumestrol (ISO)

deoxynivalenol (ISO)

dextran sulfate (ISO)

diethylstilbestrol (EXP)

doxorubicin (ISO)

ethanol (ISO)

finasteride (EXP)

flavonoids (EXP)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

gallic acid (ISO)

genistein (ISO)

gentamycin (EXP)

glafenine (EXP)

hydrogen cyanide (ISO)

ivermectin (ISO)

methapyrilene (ISO)

Nutlin-3 (ISO)

oxaliplatin (EXP)

ozone (ISO)

palytoxin (ISO)

paracetamol (ISO)

pentachlorophenol (ISO)

phenobarbital (ISO)

potassium cyanide (ISO)

resveratrol (EXP,ISO)

sodium arsenite (ISO)

sulindac (EXP)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

dendrite morphogenesis (IEA,ISO)

lamellipodium morphogenesis (IEA,ISO)

megakaryocyte development (IEA,ISO)

neuron migration (IBA)

positive regulation of protein tyrosine kinase activity (ISO)

postsynapse to nucleus signaling pathway (EXP,IDA,IEP,IMP)

somitogenesis (IEA,ISO)

Cellular Component

actin-based cell projection (IBA)

cell leading edge (ISO)

cytoskeleton (IEA)

filopodium (IEA)

filopodium tip (IEA,ISO)

glutamatergic synapse (EXP,IDA,IEP,IMP)

growth cone (IEA)

lamellipodium (IBA,IEA,ISO)

neuron projection (IEA,ISO)

nucleus (IEA)

postsynaptic density (IDA,IEP,IMP)

SCAR complex (IBA,IEA,ISO)

Molecular Function

protein binding (IPI,ISO)

protein tyrosine kinase activator activity (IEA,ISO)

SH3 domain binding (IBA,IEA,ISO)

signaling adaptor activity (IBA,IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

E-cadherin signaling pathway (ISO)

platelet-derived growth factor signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Nanoscale segregation of actin nucleation and elongation factors determines dendritic spine protrusion.	Chazeau A, etal., EMBO J. 2014 Dec 1;33(23):2745-64. doi: 10.15252/embj.201488837. Epub 2014 Oct 7.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Dysbindin-1, WAVE2 and Abi-1 form a complex that regulates dendritic spine formation.	Ito H, etal., Mol Psychiatry. 2010 Oct;15(10):976-86. doi: 10.1038/mp.2010.69. Epub 2010 Jun 8.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7.	Abelson interacting protein 1 (Abi-1) is essential for dendrite morphogenesis and synapse formation.	Proepper C, etal., EMBO J. 2007 Mar 7;26(5):1397-409. Epub 2007 Feb 15.
8.	Heterogeneous nuclear ribonucleoprotein k interacts with Abi-1 at postsynaptic sites and modulates dendritic spine morphology.	Proepper C, etal., PLoS One. 2011;6(11):e27045. doi: 10.1371/journal.pone.0027045. Epub 2011 Nov 15.
9.	GOA pipeline	RGD automated data pipeline
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Identification of a candidate human spectrin Src homology 3 domain-binding protein suggests a general mechanism of association of tyrosine kinases with the spectrin-based membrane skeleton.	Ziemnicka-Kotula D, etal., J Biol Chem 1998 May 29;273(22):13681-92.

Additional References at PubMed

PMID:10995551	PMID:11516653	PMID:12477932	PMID:12672821	PMID:15755804	PMID:16831833	PMID:17101133	PMID:17664349	PMID:18560548	PMID:19056867	PMID:19200726	PMID:19798448
PMID:21107423	PMID:21464958	PMID:21795692	PMID:25297099	PMID:25468996	PMID:30053369

Genomics

Comparative Map Data

Abi1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	90,006,917 - 90,088,002 (-)	NCBI		GRCr8
mRatBN7.2	17	85,098,837 - 85,179,829 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	85,098,550 - 85,179,792 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	88,583,073 - 88,664,013 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	92,418,465 - 92,499,400 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	86,435,255 - 86,516,184 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	89,951,662 - 90,033,334 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	89,951,752 - 90,033,328 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	91,617,052 - 91,698,739 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	96,576,331 - 96,648,752 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	96,587,163 - 96,659,522 (-)	NCBI
Celera	17	83,715,811 - 83,796,579 (+)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

ABI1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	26,746,596 - 26,860,958 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	26,746,593 - 26,861,087 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	27,035,525 - 27,149,887 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	27,075,531 - 27,189,965 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	10	26,743,902 - 26,858,351 (-)	NCBI		Celera
Cytogenetic Map	10	p12.1	NCBI
HuRef	10	26,695,811 - 26,810,376 (-)	NCBI		HuRef
CHM1_1	10	27,032,979 - 27,149,984 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	26,768,504 - 26,882,882 (-)	NCBI		T2T-CHM13v2.0

Abi1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	22,830,085 - 22,930,207 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	22,830,085 - 22,930,253 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	22,940,073 - 23,040,241 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	22,940,073 - 23,040,241 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	22,795,509 - 22,895,760 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	22,772,161 - 22,862,244 (-)	NCBI		MGSCv36	mm8
Celera	2	22,671,348 - 22,771,879 (-)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI
cM Map	2	15.18	NCBI

Abi1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955429	2,682,343 - 2,783,752 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955429	2,682,341 - 2,783,752 (+)	NCBI	ChiLan1.0	ChiLan1.0

ABI1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	39,383,822 - 39,495,774 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	39,389,108 - 39,501,098 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	26,863,648 - 26,975,376 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	27,227,960 - 27,339,434 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	27,227,960 - 27,339,434 (-)	Ensembl	panpan1.1		panPan2

ABI1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	6,941,752 - 7,059,466 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	6,941,900 - 7,057,684 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	5,695,050 - 5,812,623 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	5,131,485 - 5,249,349 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	5,131,464 - 5,249,349 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	4,508,861 - 4,626,433 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	4,587,702 - 4,705,303 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	4,752,811 - 4,870,263 (+)	NCBI		UU_Cfam_GSD_1.0

Abi1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	25,925,448 - 26,028,891 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936484	2,088,927 - 2,194,109 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936484	2,090,605 - 2,194,109 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ABI1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	48,939,446 - 49,069,441 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	48,939,407 - 49,069,269 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ABI1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	26,377,822 - 26,495,665 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	26,379,516 - 26,495,676 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666051	32,373,606 - 32,493,129 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Abi1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624796	2,312,005 - 2,431,284 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Abi1
137 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	224
Count of miRNA genes:	145
Interacting mature miRNAs:	188
Transcripts:	ENSRNOT00000057572
Prediction methods:	Miranda, Pita, Pita,Targetscan, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8694181	Bw151	Body weight QTL 151	4.36	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
1358295	Aocep1	Aortic cell protein QTL 1	6.1	7e-07	thoracic aorta cellular protein amount (VT:0010598)	aortic cell percentage	17	40990005	85990005	Rat
7411575	Bw140	Body weight QTL 140	30.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	48560935	86533673	Rat
2317045	Aia11	Adjuvant induced arthritis QTL 11	4.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	60781426	86533673	Rat
7411577	Bw141	Body weight QTL 141		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	17	62619516	86533673	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	50909099	86022412	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	49920154	86533673	Rat
2303580	Gluco49	Glucose level QTL 49	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	50040271	86533673	Rat

Markers in Region

D17Rat51

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	85,119,450 - 85,119,583 (-)	MAPPER	mRatBN7.2
Rnor_6.0	17	90,012,592 - 90,012,722	NCBI	Rnor6.0
Rnor_5.0	17	91,677,997 - 91,678,127	UniSTS	Rnor5.0
RGSC_v3.4	17	96,587,775 - 96,587,905	UniSTS	RGSC3.4
RGSC_v3.4	17	96,587,774 - 96,587,905	RGD	RGSC3.4
RGSC_v3.1	17	96,598,608 - 96,598,738	RGD
Celera	17	83,775,845 - 83,775,971	UniSTS
RH 3.4 Map	17	848.7	RGD
RH 3.4 Map	17	848.7	UniSTS
RH 2.0 Map	17	730.2	RGD
SHRSP x BN Map	17	47.5399	RGD
FHH x ACI Map	17	68.73	RGD
Cytogenetic Map	17	q12.3	UniSTS

RH127345

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	85,099,165 - 85,099,348 (-)	MAPPER	mRatBN7.2
Rnor_6.0	17	90,032,823 - 90,033,005	NCBI	Rnor6.0
Rnor_5.0	17	91,698,228 - 91,698,410	UniSTS	Rnor5.0
Celera	17	83,796,068 - 83,796,250	UniSTS
RH 3.4 Map	17	841.2	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

RH137994

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	85,176,056 - 85,176,305 (-)	MAPPER	mRatBN7.2
Rnor_6.0	17	89,955,200 - 89,955,448	NCBI	Rnor6.0
Rnor_5.0	17	91,620,605 - 91,620,853	UniSTS	Rnor5.0
RGSC_v3.4	17	96,645,056 - 96,645,304	UniSTS	RGSC3.4
Celera	17	83,719,259 - 83,719,507	UniSTS
RH 3.4 Map	17	863.7	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

AI009242

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	85,145,642 - 85,145,846 (-)	MAPPER	mRatBN7.2
Rnor_6.0	17	89,986,322 - 89,986,525	NCBI	Rnor6.0
Rnor_5.0	17	91,651,727 - 91,651,930	UniSTS	Rnor5.0
RGSC_v3.4	17	96,614,187 - 96,614,390	UniSTS	RGSC3.4
Celera	17	83,749,643 - 83,749,846	UniSTS
RH 3.4 Map	17	844.3	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

AU049482

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	85,171,263 - 85,171,421 (-)	MAPPER	mRatBN7.2
Rnor_6.0	17	89,960,404 - 89,960,561	NCBI	Rnor6.0
Rnor_5.0	17	91,625,809 - 91,625,966	UniSTS	Rnor5.0
RGSC_v3.4	17	96,639,806 - 96,639,963	UniSTS	RGSC3.4
Celera	17	83,724,076 - 83,724,236	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_024397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF176784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC129092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB725283	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000057572 ⟹ ENSRNOP00000054381

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	85,098,845 - 85,179,753 (-)	Ensembl
Rnor_6.0 Ensembl	17	89,951,752 - 90,033,328 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091023 ⟹ ENSRNOP00000071079

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	85,098,550 - 85,179,777 (-)	Ensembl
Rnor_6.0 Ensembl	17	89,951,815 - 90,032,186 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093928 ⟹ ENSRNOP00000081022

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	85,098,852 - 85,179,792 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103736 ⟹ ENSRNOP00000085236

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	85,098,845 - 85,179,753 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108948 ⟹ ENSRNOP00000093871

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	85,098,555 - 85,179,746 (-)	Ensembl

RefSeq Acc Id:

NM_024397 ⟹ NP_077373

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	90,006,917 - 90,087,827 (-)	NCBI
mRatBN7.2	17	85,098,837 - 85,179,753 (-)	NCBI
Rnor_6.0	17	89,951,752 - 90,033,334 (+)	NCBI
Rnor_5.0	17	91,617,052 - 91,698,739 (+)	NCBI
RGSC_v3.4	17	96,576,331 - 96,648,752 (-)	RGD
Celera	17	83,715,811 - 83,796,579 (+)	RGD

Sequence:

show sequence

CCCCGTCGGACTCAGCTGCCTCTGTCTCTTTAACGCGAGAGGAAGCGATGCGGAGGGGTGGAAA
ATGGCAGAGCTGCAGATGTTACTAGAGGAGGAGATCCCGTCTGGCAAGAGGGCGCTGATAGAGA
GTTACCAGAACCTGACCCGGGTGGCGGACTACTGTGAAAACAACTACATACAGGCTACAGACAA
GAGGAAAGCTCTAGAAGAGACCAAAGCATATACAACTCAATCTCTAGCTAGTGTTGCTTATCAA
ATAAATGCATTGGCCAACAATGTGCTCCAGCTGCTGGATATCCAGGCCTCTCAGCTGCGGAGGA
TGGAGTCGTCCATCAATCACATCTCACAGACTGTGGATATTCATAAAGAAAAAGTGGCTCGAAG
AGAGATTGGTATTTTGACAACAAATAAGAATACATCAAGAACTCATAAAATAATCGCACCTGCA
AATATGGAGCGTCCTGTCAGGTATATTCGGAAACCTATTGACTACACAGTTCTGGATGATGTGG
GCCATGGAGTTAAGTGGCTAAAAGCCAAGCACGGAAATAACCAGCCTGCAAGAACTGGCACATT
GTCGAGAACAAATCCTCCCACGCAGAAACCACCAAGCCCTCCTGTGTCAGGCCGAGGAACTTTG
GGGCGGAATACCCCTTACAAAACCCTAGAGCCTGTTAAGCCTCCCACAGTTCCTAATGACTACA
TGACTAGTCCTGCGAGGCTTGGAAGCCAGCATAGTCCAGGCAGGACGGCTTCTTTAAATCAGAG
ACCAAGGACGCATAGTGGGAGTAGTGGAGGAAGCGGAAGCCGGGAAAACAGTGGGAGCAGCAGC
ATTGGTATTCCCATTGCTGTGCCCACACCCTCCCCGCCCACTGCGGGCCCAGCAGCCCCTGGCG
CAGCTCCTGGTTCCCAGTATGGCACAATGACCAGGCAGATTTCTCGACACAACTCTACCACTTC
TTCGACATCTTCTGGTGGATATAGACGAACTCCCTCTGTGACTGCGCAATTCTCTGCTCAGCCT
CATGTTAATGGAGGTCCACTTTATTCTCAAAATTCAATTTCTATTGCCCCCCCTCCTCCCCCCA
TGCCTCAGTTGACTCCACAGATACCTCTCACAGGCTTCGTGGCCAGGGTGCAGGAAAACATTGC
TGATAGCCCAACTCCACCACCACCTCCTCCACCAGATGACATTCCCATGTTCGATGACTCTCCA
CCTCCCCCACCACCTCCTCCTGTGGACTACGAAGACGAAGAAGCTGCAGTAGTTCAGTATAGTG
ACCCATATGCAGATGGGGACCCTGCATGGGCTCCCAAGAACTATATTGAGAAAGTTGTTGCAAT
ATATGATTATACAAAAGACAAGGATGATGAGCTGTCCTTTAAAGAGGGTGCAATCATCTATGTC
ATAAAGAAGAACGATGATGGCTGGTTCGAAGGAGTTTGCAATCGAGTAACTGGACTCTTCCCTG
GGAACTATGTTGAATCAATCATGCACTATACTGATTAGTTTTTCTTTCGTTTTCTTTTCATGTA
GGTTATTACTCTGTCATACTGTGGGACTATATGGTTAACAATTGTTTTAATGTTTAAAATGTGC
CCATATTTTCAGGACATGTTTTATTGGTATATTTGGATGTCTACCTGTAAGCTTAAAATTTGGA
GGCAGTTCAAACGTTGCTGAACAGCAATTGCTGTCAGACTGCCTGTAATTGATCATGCATATGT
ACTCACACCTTGATACGTTTATGACCAGCCTAAAAATTCTGGGGATGTGGGTTATTATGTTTAA
CAAATCATGGTTCAGAATGCACCATTACATGTTTCAGTGCAGCATGGTCACTAACATTGTGTCA
GACTAATAGGAAAAAAAAAAAACAGAAACTTCAATGCTGGTGCTGGTCATACTTTTGGTTTCAA
TTCTCATTTTTAAAAAAGTACTGTGTTTAAAGCATGCATAAATTTTTATGTATTGAAATATACT
TAGCAATTCAAGAAGCTTCCAATTTGTGTAAGCGTTATCTGGAGCACTACTCATACCTGAGTCT
CCTAAGTTCTCCACGTGAAATGAAAGACTAGCTGTATGCTGTAATTTGTATCTAAGTTTTTTAA
TGAGTGAGATTTGCATTATAAATTTTTCCATTCATAAATACATAAGTAAACCAAAGGATTTTTG
TCCTCTCCTTTACTGGTTTGCTTTAATCATGTGTGCTCATGCATATGCATGCACACCCCCAGCC
CCTTAAAAAAGATTTATTGCAGAATTATGGTTCTATTTTCTCAATGCATCAGTTTGAAAATATT
TTTAGCTTAATCTTAATGTGTCCAAACAGCAATGCGACAGAATTTTGCAGATTTTGGAGCTAGA
CTGTGTCAGAGTAAGCACATGATATTCTGGGGGTAACATCTGAAGGAATGCTACACTTGACCTT
TTATATTTTAATGAAACTGAATTTACACTGACTCAGTGAAAGGAAAATCTTTTACATATTGTAA
AGATGGATGCAGTTAGTTTGTGGATAGGCATATTTAATCCATTGCCTGCCACTAGAAACAAAAT
TTTTACAATAATTGGGAAAGAAACTAGGCCATGTAATAAGCAGGTTTGTATTGTAACTTAAATG
CAACACATGCACTTTGTGTGTCTCCTTGATTTAAGGGAGGGTTTGAGGGATACTTCTCTTGTAT
ATAAGACTGTACTGCTTAGGATATTAAAGTAGATCACACAAGTGTGGGTTTCTATGTATTGAGG
GTTACAGATTATGACAGCATAGTAAGTGATGAGAGCAGTGCAAAATATTTCTGAAAATTAAAGA
CCATTGTTCCTACCAAATCAACTATTCCATATATATTTCACCTTTGTTATTTTTGAAGTACTAT
GTCATTAGTGATCAGATAGCTATATTATGCTTTCTTTTTGAAGCAGAATGTTTTCTTCATTTGT
AAATAACCTGTTGTCTAAATTTTATCTACAGTCTTTTATAATAAACTATGCTCCTATACAAAAA
A

hide sequence

RefSeq Acc Id:

XM_006254353 ⟹ XP_006254415

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	90,006,917 - 90,087,968 (-)	NCBI
mRatBN7.2	17	85,098,837 - 85,179,825 (-)	NCBI
Rnor_6.0	17	89,951,681 - 90,033,158 (+)	NCBI
Rnor_5.0	17	91,617,052 - 91,698,739 (+)	NCBI

Sequence:

show sequence

GAGGTGCAGTCCCACAATACCCGGCGGAGGGCGGGTGGGTGGTTAGTGTCTGATCTCTGCGGCG
CTTCGGTCCCCGTCGGACTCAGCTGCCTCTGTCTCTTTAACGCGAGAGGAAGCGATGCGGAGGG
GTGGAAAATGGCAGAGCTGCAGATGTTACTAGAGGAGGAGATCCCGTCTGGCAAGAGGGCGCTG
ATAGAGAGTTACCAGAACCTGACCCGGGTGGCGGACTACTGTGAAAACAACTACATACAGGCTA
CAGACAAGAGGAAAGCTCTAGAAGAGACCAAAGCATATACAACTCAATCTCTAGCTAGTGTTGC
TTATCAAATAAATGCATTGGCCAACAATGTGCTCCAGCTGCTGGATATCCAGGCCTCTCAGCTG
CGGAGGATGGAGTCGTCCATCAATCACATCTCACAGACTGTGGATATTCATAAAGAAAAAGTGG
CTCGAAGAGAGATTGGTATTTTGACAACAAATAAGAATACATCAAGAACTCATAAAATAATCGC
ACCTGCAAATATGGAGCGTCCTGTCAGGTATATTCGGAAACCTATTGACTACACAGTTCTGGAT
GATGTGGGCCATGGAGTTAAGTGGCTAAAAGCCAAGCACGGAAATAACCAGCCTGCAAGAACTG
GCACATTGTCGAGAACAAATCCTCCCACGCAGAAACCACCAAGCCCTCCTGTGTCAGGCCGAGG
AACTTTGGGGCGGAATACCCCTTACAAAACCCTAGAGCCTGTTAAGCCTCCCACAGTTCCTAAT
GACTACATGACTAGTCCTGCGAGGCTTGGAAGCCAGCATAGTCCAGGCAGGACGGCTTCTTTAA
ATCAGAGACCAAGGACGCATAGTGGGAGTAGTGGAGGAAGCGGAAGCCGGGAAAACAGTGGGAG
CAGCAGCATTGGTATTCCCATTGCTGTGCCCACACCCTCCCCGCCCACTGCGGGCCCAGCCCCT
GGCGCAGCTCCTGGTTCCCAGTATGGCACAATGACCAGGCAGATTTCTCGACACAACTCTACCA
CTTCTTCGACATCTTCTGGTGGATATAGACGAACTCCCTCTGTGACTGCGCAATTCTCTGCTCA
GCCTCATGTTAATGGAGGTCCACTTTATTCTCAAAATTCAATTTCTATTGCCCCCCCTCCTCCC
CCCATGCCTCAGTTGACTCCACAGATACCTCTCACAGGCTTCGTGGCCAGGGTGCAGGAAAACA
TTGCTGATAGCCCAACTCCACCACCACCTCCTCCACCAGATGACATTCCCATGTTCGATGACTC
TCCACCTCCCCCACCACCTCCTCCTGTGGACTACGAAGACGAAGAAGCTGCAGTAGTTCAGTAT
AGTGACCCATATGCAGATGGGGACCCTGCATGGGCTCCCAAGAACTATATTGAGAAAGTTGTTG
CAATATATGATTATACAAAAGACAAGGATGATGAGCTGTCCTTTAAAGAGGGTGCAATCATCTA
TGTCATAAAGAAGAACGATGATGGCTGGTTCGAAGGAGTTTGCAATCGAGTAACTGGACTCTTC
CCTGGGAACTATGTTGAATCAATCATGCACTATACTGATTAGTTTTTCTTTCGTTTTCTTTTCA
TGTAGGTTATTACTCTGTCATACTGTGGGACTATATGGTTAACAATTGTTTTAATGTTTAAAAT
GTGCCCATATTTTCAGGACATGTTTTATTGGTATATTTGGATGTCTACCTGTAAGCTTAAAATT
TGGAGGCAGTTCAAACGTTGCTGAACAGCAATTGCTGTCAGACTGCCTGTAATTGATCATGCAT
ATGTACTCACACCTTGATACGTTTATGACCAGCCTAAAAATTCTGGGGATGTGGGTTATTATGT
TTAACAAATCATGGTTCAGAATGCACCATTACATGTTTCAGTGCAGCATGGTCACTAACATTGT
GTCAGACTAATAGGAAAAAAAAAAAACAGAAACTTCAATGCTGGTGCTGGTCATACTTTTGGTT
TCAATTCTCATTTTTAAAAAAGTACTGTGTTTAAAGCATGCATAAATTTTTATGTATTGAAATA
TACTTAGCAATTCAAGAAGCTTCCAATTTGTGTAAGCGTTATCTGGAGCACTACTCATACCTGA
GTCTCCTAAGTTCTCCACGTGAAATGAAAGACTAGCTGTATGCTGTAATTTGTATCTAAGTTTT
TTAATGAGTGAGATTTGCATTATAAATTTTTCCATTCATAAATACATAAGTAAACCAAAGGATT
TTTGTCCTCTCCTTTACTGGTTTGCTTTAATCATGTGTGCTCATGCATATGCATGCACACCCCC
AGCCCCTTAAAAAAGATTTATTGCAGAATTATGGTTCTATTTTCTCAATGCATCAGTTTGAAAA
TATTTTTAGCTTAATCTTAATGTGTCCAAACAGCAATGCGACAGAATTTTGCAGATTTTGGAGC
TAGACTGTGTCAGAGTAAGCACATGATATTCTGGGGGTAACATCTGAAGGAATGCTACACTTGA
CCTTTTATATTTTAATGAAACTGAATTTACACTGACTCAGTGAAAGGAAAATCTTTTACATATT
GTAAAGATGGATGCAGTTAGTTTGTGGATAGGCATATTTAATCCATTGCCTGCCACTAGAAACA
AAATTTTTACAATAATTGGGAAAGAAACTAGGCCATGTAATAAGCAGGTTTGTATTGTAACTTA
AATGCAACACATGCACTTTGTGTGTCTCCTTGATTTAAGGGAGGGTTTGAGGGATACTTCTCTT
GTATATAAGACTGTACTGCTTAGGATATTAAAGTAGATCACACAAGTGTGGGTTTCTATGTATT
GAGGGTTACAGATTATGACAGCATAGTAAGTGATGAGAGCAGTGCAAAATATTTCTGAAAATTA
AAGACCATTGTTCCTACCAAA

hide sequence

RefSeq Acc Id:

XM_006254354 ⟹ XP_006254416

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	90,006,917 - 90,087,968 (-)	NCBI
mRatBN7.2	17	85,098,837 - 85,179,825 (-)	NCBI
Rnor_6.0	17	89,951,681 - 90,033,158 (+)	NCBI
Rnor_5.0	17	91,617,052 - 91,698,739 (+)	NCBI

Sequence:

show sequence

GAGGTGCAGTCCCACAATACCCGGCGGAGGGCGGGTGGGTGGTTAGTGTCTGATCTCTGCGGCG
CTTCGGTCCCCGTCGGACTCAGCTGCCTCTGTCTCTTTAACGCGAGAGGAAGCGATGCGGAGGG
GTGGAAAATGGCAGAGCTGCAGATGTTACTAGAGGAGGAGATCCCGTCTGGCAAGAGGGCGCTG
ATAGAGAGTTACCAGAACCTGACCCGGGTGGCGGACTACTGTGAAAACAACTACATACAGGCTA
CAGACAAGAGGAAAGCTCTAGAAGAGACCAAAGCATATACAACTCAATCTCTAGCTAGTGTTGC
TTATCAAATAAATGCATTGGCCAACAATGTGCTCCAGCTGCTGGATATCCAGGCCTCTCAGCTG
CGGAGGATGGAGTCGTCCATCAATCACATCTCACAGACTGTGGATATTCATAAAGAAAAAGTGG
CTCGAAGAGAGATTGGTATTTTGACAACAAATAAGAATACATCAAGAACTCATAAAATAATCGC
ACCTGCAAATATGGAGCGTCCTGTCAGGTATATTCGGAAACCTATTGACTACACAGTTCTGGAT
GATGTGGGCCATGGAGTTAAGCACGGAAATAACCAGCCTGCAAGAACTGGCACATTGTCGAGAA
CAAATCCTCCCACGCAGAAACCACCAAGCCCTCCTGTGTCAGGCCGAGGAACTTTGGGGCGGAA
TACCCCTTACAAAACCCTAGAGCCTGTTAAGCCTCCCACAGTTCCTAATGACTACATGACTAGT
CCTGCGAGGCTTGGAAGCCAGCATAGTCCAGGCAGGACGGCTTCTTTAAATCAGAGACCAAGGA
CGCATAGTGGGAGTAGTGGAGGAAGCGGAAGCCGGGAAAACAGTGGGAGCAGCAGCATTGGTAT
TCCCATTGCTGTGCCCACACCCTCCCCGCCCACTGCGGGCCCAGCAGCCCCTGGCGCAGCTCCT
GGTTCCCAGTATGGCACAATGACCAGGCAGATTTCTCGACACAACTCTACCACTTCTTCGACAT
CTTCTGGTGGATATAGACGAACTCCCTCTGTGACTGCGCAATTCTCTGCTCAGCCTCATGTTAA
TGGAGGTCCACTTTATTCTCAAAATTCAATTTCTATTGCCCCCCCTCCTCCCCCCATGCCTCAG
TTGACTCCACAGATACCTCTCACAGGCTTCGTGGCCAGGGTGCAGGAAAACATTGCTGATAGCC
CAACTCCACCACCACCTCCTCCACCAGATGACATTCCCATGTTCGATGACTCTCCACCTCCCCC
ACCACCTCCTCCTGTGGACTACGAAGACGAAGAAGCTGCAGTAGTTCAGTATAGTGACCCATAT
GCAGATGGGGACCCTGCATGGGCTCCCAAGAACTATATTGAGAAAGTTGTTGCAATATATGATT
ATACAAAAGACAAGGATGATGAGCTGTCCTTTAAAGAGGGTGCAATCATCTATGTCATAAAGAA
GAACGATGATGGCTGGTTCGAAGGAGTTTGCAATCGAGTAACTGGACTCTTCCCTGGGAACTAT
GTTGAATCAATCATGCACTATACTGATTAGTTTTTCTTTCGTTTTCTTTTCATGTAGGTTATTA
CTCTGTCATACTGTGGGACTATATGGTTAACAATTGTTTTAATGTTTAAAATGTGCCCATATTT
TCAGGACATGTTTTATTGGTATATTTGGATGTCTACCTGTAAGCTTAAAATTTGGAGGCAGTTC
AAACGTTGCTGAACAGCAATTGCTGTCAGACTGCCTGTAATTGATCATGCATATGTACTCACAC
CTTGATACGTTTATGACCAGCCTAAAAATTCTGGGGATGTGGGTTATTATGTTTAACAAATCAT
GGTTCAGAATGCACCATTACATGTTTCAGTGCAGCATGGTCACTAACATTGTGTCAGACTAATA
GGAAAAAAAAAAAACAGAAACTTCAATGCTGGTGCTGGTCATACTTTTGGTTTCAATTCTCATT
TTTAAAAAAGTACTGTGTTTAAAGCATGCATAAATTTTTATGTATTGAAATATACTTAGCAATT
CAAGAAGCTTCCAATTTGTGTAAGCGTTATCTGGAGCACTACTCATACCTGAGTCTCCTAAGTT
CTCCACGTGAAATGAAAGACTAGCTGTATGCTGTAATTTGTATCTAAGTTTTTTAATGAGTGAG
ATTTGCATTATAAATTTTTCCATTCATAAATACATAAGTAAACCAAAGGATTTTTGTCCTCTCC
TTTACTGGTTTGCTTTAATCATGTGTGCTCATGCATATGCATGCACACCCCCAGCCCCTTAAAA
AAGATTTATTGCAGAATTATGGTTCTATTTTCTCAATGCATCAGTTTGAAAATATTTTTAGCTT
AATCTTAATGTGTCCAAACAGCAATGCGACAGAATTTTGCAGATTTTGGAGCTAGACTGTGTCA
GAGTAAGCACATGATATTCTGGGGGTAACATCTGAAGGAATGCTACACTTGACCTTTTATATTT
TAATGAAACTGAATTTACACTGACTCAGTGAAAGGAAAATCTTTTACATATTGTAAAGATGGAT
GCAGTTAGTTTGTGGATAGGCATATTTAATCCATTGCCTGCCACTAGAAACAAAATTTTTACAA
TAATTGGGAAAGAAACTAGGCCATGTAATAAGCAGGTTTGTATTGTAACTTAAATGCAACACAT
GCACTTTGTGTGTCTCCTTGATTTAAGGGAGGGTTTGAGGGATACTTCTCTTGTATATAAGACT
GTACTGCTTAGGATATTAAAGTAGATCACACAAGTGTGGGTTTCTATGTATTGAGGGTTACAGA
TTATGACAGCATAGTAAGTGATGAGAGCAGTGCAAAATATTTCTGAAAATTAAAGACCATTGTT
CCTACCAAA

hide sequence

RefSeq Acc Id:

XM_006254355 ⟹ XP_006254417

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	90,006,917 - 90,087,968 (-)	NCBI
mRatBN7.2	17	85,098,837 - 85,179,825 (-)	NCBI
Rnor_6.0	17	89,951,681 - 90,033,158 (+)	NCBI
Rnor_5.0	17	91,617,052 - 91,698,739 (+)	NCBI

Sequence:

show sequence

GAGGTGCAGTCCCACAATACCCGGCGGAGGGCGGGTGGGTGGTTAGTGTCTGATCTCTGCGGCG
CTTCGGTCCCCGTCGGACTCAGCTGCCTCTGTCTCTTTAACGCGAGAGGAAGCGATGCGGAGGG
GTGGAAAATGGCAGAGCTGCAGATGTTACTAGAGGAGGAGATCCCGTCTGGCAAGAGGGCGCTG
ATAGAGAGTTACCAGAACCTGACCCGGGTGGCGGACTACTGTGAAAACAACTACATACAGGCTA
CAGACAAGAGGAAAGCTCTAGAAGAGACCAAAGCATATACAACTCAATCTCTAGCTAGTGTTGC
TTATCAAATAAATGCATTGGCCAACAATGTGCTCCAGCTGCTGGATATCCAGGCCTCTCAGCTG
CGGAGGATGGAGTCGTCCATCAATCACATCTCACAGACTGTGGATATTCATAAAGAAAAAGTGG
CTCGAAGAGAGATTGGTATTTTGACAACAAATAAGAATACATCAAGAACTCATAAAATAATCGC
ACCTGCAAATATGGAGCGTCCTGTCAGGTATATTCGGAAACCTATTGACTACACAGTTCTGGAT
GATGTGGGCCATGGAGTTAAGCACGGAAATAACCAGCCTGCAAGAACTGGCACATTGTCGAGAA
CAAATCCTCCCACGCAGAAACCACCAAGCCCTCCTGTGTCAGGCCGAGGAACTTTGGGGCGGAA
TACCCCTTACAAAACCCTAGAGCCTGTTAAGCCTCCCACAGTTCCTAATGACTACATGACTAGT
CCTGCGAGGCTTGGAAGCCAGCATAGTCCAGGCAGGACGGCTTCTTTAAATCAGAGACCAAGGA
CGCATAGTGGGAGTAGTGGAGGAAGCGGAAGCCGGGAAAACAGTGGGAGCAGCAGCATTGGTAT
TCCCATTGCTGTGCCCACACCCTCCCCGCCCACTGCGGGCCCAGCCCCTGGCGCAGCTCCTGGT
TCCCAGTATGGCACAATGACCAGGCAGATTTCTCGACACAACTCTACCACTTCTTCGACATCTT
CTGGTGGATATAGACGAACTCCCTCTGTGACTGCGCAATTCTCTGCTCAGCCTCATGTTAATGG
AGGTCCACTTTATTCTCAAAATTCAATTTCTATTGCCCCCCCTCCTCCCCCCATGCCTCAGTTG
ACTCCACAGATACCTCTCACAGGCTTCGTGGCCAGGGTGCAGGAAAACATTGCTGATAGCCCAA
CTCCACCACCACCTCCTCCACCAGATGACATTCCCATGTTCGATGACTCTCCACCTCCCCCACC
ACCTCCTCCTGTGGACTACGAAGACGAAGAAGCTGCAGTAGTTCAGTATAGTGACCCATATGCA
GATGGGGACCCTGCATGGGCTCCCAAGAACTATATTGAGAAAGTTGTTGCAATATATGATTATA
CAAAAGACAAGGATGATGAGCTGTCCTTTAAAGAGGGTGCAATCATCTATGTCATAAAGAAGAA
CGATGATGGCTGGTTCGAAGGAGTTTGCAATCGAGTAACTGGACTCTTCCCTGGGAACTATGTT
GAATCAATCATGCACTATACTGATTAGTTTTTCTTTCGTTTTCTTTTCATGTAGGTTATTACTC
TGTCATACTGTGGGACTATATGGTTAACAATTGTTTTAATGTTTAAAATGTGCCCATATTTTCA
GGACATGTTTTATTGGTATATTTGGATGTCTACCTGTAAGCTTAAAATTTGGAGGCAGTTCAAA
CGTTGCTGAACAGCAATTGCTGTCAGACTGCCTGTAATTGATCATGCATATGTACTCACACCTT
GATACGTTTATGACCAGCCTAAAAATTCTGGGGATGTGGGTTATTATGTTTAACAAATCATGGT
TCAGAATGCACCATTACATGTTTCAGTGCAGCATGGTCACTAACATTGTGTCAGACTAATAGGA
AAAAAAAAAAACAGAAACTTCAATGCTGGTGCTGGTCATACTTTTGGTTTCAATTCTCATTTTT
AAAAAAGTACTGTGTTTAAAGCATGCATAAATTTTTATGTATTGAAATATACTTAGCAATTCAA
GAAGCTTCCAATTTGTGTAAGCGTTATCTGGAGCACTACTCATACCTGAGTCTCCTAAGTTCTC
CACGTGAAATGAAAGACTAGCTGTATGCTGTAATTTGTATCTAAGTTTTTTAATGAGTGAGATT
TGCATTATAAATTTTTCCATTCATAAATACATAAGTAAACCAAAGGATTTTTGTCCTCTCCTTT
ACTGGTTTGCTTTAATCATGTGTGCTCATGCATATGCATGCACACCCCCAGCCCCTTAAAAAAG
ATTTATTGCAGAATTATGGTTCTATTTTCTCAATGCATCAGTTTGAAAATATTTTTAGCTTAAT
CTTAATGTGTCCAAACAGCAATGCGACAGAATTTTGCAGATTTTGGAGCTAGACTGTGTCAGAG
TAAGCACATGATATTCTGGGGGTAACATCTGAAGGAATGCTACACTTGACCTTTTATATTTTAA
TGAAACTGAATTTACACTGACTCAGTGAAAGGAAAATCTTTTACATATTGTAAAGATGGATGCA
GTTAGTTTGTGGATAGGCATATTTAATCCATTGCCTGCCACTAGAAACAAAATTTTTACAATAA
TTGGGAAAGAAACTAGGCCATGTAATAAGCAGGTTTGTATTGTAACTTAAATGCAACACATGCA
CTTTGTGTGTCTCCTTGATTTAAGGGAGGGTTTGAGGGATACTTCTCTTGTATATAAGACTGTA
CTGCTTAGGATATTAAAGTAGATCACACAAGTGTGGGTTTCTATGTATTGAGGGTTACAGATTA
TGACAGCATAGTAAGTGATGAGAGCAGTGCAAAATATTTCTGAAAATTAAAGACCATTGTTCCT
ACCAAA

hide sequence

RefSeq Acc Id:

XM_006254356 ⟹ XP_006254418

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	90,006,917 - 90,088,002 (-)	NCBI
mRatBN7.2	17	85,098,837 - 85,179,824 (-)	NCBI
Rnor_6.0	17	89,951,681 - 90,033,158 (+)	NCBI
Rnor_5.0	17	91,617,052 - 91,698,739 (+)	NCBI

Sequence:

show sequence

GAGGTGCAGTCCCACAATACCCGGCGGAGGGCGGGTGGGTGGTTAGTGTCTGATCTCTGCGGCG
CTTCGGTCCCCGTCGGACTCAGCTGCCTCTGTCTCTTTAACGCGAGAGGAAGCGATGCGGAGGG
GTGGAAAATGGCAGAGCTGCAGATGTTACTAGAGGAGGAGATCCCGTCTGGCAAGAGGGCGCTG
ATAGAGAGTTACCAGAACCTGACCCGGGTGGCGGACTACTGTGAAAACAACTACATACAGGCTA
CAGACAAGAGGAAAGCTCTAGAAGAGACCAAAGCATATACAACTCAATCTCTAGCTAGTGTTGC
TTATCAAATAAATGCATTGGCCAACAATGTGCTCCAGCTGCTGGATATCCAGGCCTCTCAGCTG
CGGAGGATGGAGTCGTCCATCAATCACATCTCACAGACTGTGGATATTCATAAAGAAAAAGTGG
CTCGAAGAGAGATTGGTATTTTGACAACAAATAAGAATACATCAAGAACTCATAAAATAATCGC
ACCTGCAAATATGGAGCGTCCTGTCAGGTATATTCGGAAACCTATTGACTACACAGTTCTGGAT
GATGTGGGCCATGGAGTTAAGTGGCTAAAAGCCAAGCACGGAAATAACCAGCCTGCAAGAACTG
GCACATTGTCGAGAACAAATCCTCCCACGCAGAAACCACCAAGCCCTCCTGTGTCAGGCCGAGG
AACTTTGGGGCGGAATACCCCTTACAAAACCCTAGAGCCTGTTAAGCCTCCCACAGTTCCTAAT
GACTACATGACTAGTCCTGCGAGGCTTGGAAGCCAGCATAGTCCAGGCAGGACGGCTTCTTTAA
ATCAGAGACCAAGGACGCATAGTGGGAGTAGTGGAGGAAGCGGAAGCCGGGAAAACAGTGGGAG
CAGCAGCATTGGTATTCCCATTGCTGTGCCCACACCCTCCCCGCCCACTGCGGGCCCAGCAGCC
CCTGGCGCAGCTCCTGGTTCCCAGTATGGCACAATGACCAGGCAGATTTCTCGACACAACTCTA
CCACTTCTTCGACATCTTCTGGTGGATATAGACGAACTCCCTCTGTGACTGCGCAATTCTCTGC
TCAGCCTCATGTTAATGGAGGTCCACTTTATTCTCAAAATTCAATTGCTGATAGCCCAACTCCA
CCACCACCTCCTCCACCAGATGACATTCCCATGTTCGATGACTCTCCACCTCCCCCACCACCTC
CTCCTGTGGACTACGAAGACGAAGAAGCTGCAGTAGTTCAGTATAGTGACCCATATGCAGATGG
GGACCCTGCATGGGCTCCCAAGAACTATATTGAGAAAGTTGTTGCAATATATGATTATACAAAA
GACAAGGATGATGAGCTGTCCTTTAAAGAGGGTGCAATCATCTATGTCATAAAGAAGAACGATG
ATGGCTGGTTCGAAGGAGTTTGCAATCGAGTAACTGGACTCTTCCCTGGGAACTATGTTGAATC
AATCATGCACTATACTGATTAGTTTTTCTTTCGTTTTCTTTTCATGTAGGTTATTACTCTGTCA
TACTGTGGGACTATATGGTTAACAATTGTTTTAATGTTTAAAATGTGCCCATATTTTCAGGACA
TGTTTTATTGGTATATTTGGATGTCTACCTGTAAGCTTAAAATTTGGAGGCAGTTCAAACGTTG
CTGAACAGCAATTGCTGTCAGACTGCCTGTAATTGATCATGCATATGTACTCACACCTTGATAC
GTTTATGACCAGCCTAAAAATTCTGGGGATGTGGGTTATTATGTTTAACAAATCATGGTTCAGA
ATGCACCATTACATGTTTCAGTGCAGCATGGTCACTAACATTGTGTCAGACTAATAGGAAAAAA
AAAAAACAGAAACTTCAATGCTGGTGCTGGTCATACTTTTGGTTTCAATTCTCATTTTTAAAAA
AGTACTGTGTTTAAAGCATGCATAAATTTTTATGTATTGAAATATACTTAGCAATTCAAGAAGC
TTCCAATTTGTGTAAGCGTTATCTGGAGCACTACTCATACCTGAGTCTCCTAAGTTCTCCACGT
GAAATGAAAGACTAGCTGTATGCTGTAATTTGTATCTAAGTTTTTTAATGAGTGAGATTTGCAT
TATAAATTTTTCCATTCATAAATACATAAGTAAACCAAAGGATTTTTGTCCTCTCCTTTACTGG
TTTGCTTTAATCATGTGTGCTCATGCATATGCATGCACACCCCCAGCCCCTTAAAAAAGATTTA
TTGCAGAATTATGGTTCTATTTTCTCAATGCATCAGTTTGAAAATATTTTTAGCTTAATCTTAA
TGTGTCCAAACAGCAATGCGACAGAATTTTGCAGATTTTGGAGCTAGACTGTGTCAGAGTAAGC
ACATGATATTCTGGGGGTAACATCTGAAGGAATGCTACACTTGACCTTTTATATTTTAATGAAA
CTGAATTTACACTGACTCAGTGAAAGGAAAATCTTTTACATATTGTAAAGATGGATGCAGTTAG
TTTGTGGATAGGCATATTTAATCCATTGCCTGCCACTAGAAACAAAATTTTTACAATAATTGGG
AAAGAAACTAGGCCATGTAATAAGCAGGTTTGTATTGTAACTTAAATGCAACACATGCACTTTG
TGTGTCTCCTTGATTTAAGGGAGGGTTTGAGGGATACTTCTCTTGTATATAAGACTGTACTGCT
TAGGATATTAAAGTAGATCACACAAGTGTGGGTTTCTATGTATTGAGGGTTACAGATTATGACA
GCATAGTAAGTGATGAGAGCAGTGCAAAATATTTCTGAAAATTAAAGACCATTGTTCCTACCAA
A

hide sequence

RefSeq Acc Id:

XM_006254357 ⟹ XP_006254419

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	90,006,917 - 90,087,977 (-)	NCBI
mRatBN7.2	17	85,098,837 - 85,179,825 (-)	NCBI
Rnor_6.0	17	89,951,681 - 90,033,158 (+)	NCBI
Rnor_5.0	17	91,617,052 - 91,698,739 (+)	NCBI

Sequence:

show sequence

GAGGTGCAGTCCCACAATACCCGGCGGAGGGCGGGTGGGTGGTTAGTGTCTGATCTCTGCGGCG
CTTCGGTCCCCGTCGGACTCAGCTGCCTCTGTCTCTTTAACGCGAGAGGAAGCGATGCGGAGGG
GTGGAAAATGGCAGAGCTGCAGATGTTACTAGAGGAGGAGATCCCGTCTGGCAAGAGGGCGCTG
ATAGAGAGTTACCAGAACCTGACCCGGGTGGCGGACTACTGTGAAAACAACTACATACAGGCTA
CAGACAAGAGGAAAGCTCTAGAAGAGACCAAAGCATATACAACTCAATCTCTAGCTAGTGTTGC
TTATCAAATAAATGCATTGGCCAACAATGTGCTCCAGCTGCTGGATATCCAGGCCTCTCAGCTG
CGGAGGATGGAGTCGTCCATCAATCACATCTCACAGACTGTGGATATTCATAAAGAAAAAGTGG
CTCGAAGAGAGATTGGTATTTTGACAACAAATAAGAATACATCAAGAACTCATAAAATAATCGC
ACCTGCAAATATGGAGCGTCCTGTCAGGTATATTCGGAAACCTATTGACTACACAGTTCTGGAT
GATGTGGGCCATGGAGTTAAGCACGGAAATAACCAGCCTGCAAGAACTGGCACATTGTCGAGAA
CAAATCCTCCCACGCAGAAACCACCAAGCCCTCCTGTGTCAGGCCGAGGAACTTTGGGGCGGAA
TACCCCTTACAAAACCCTAGAGCCTGTTAAGCCTCCCACAGTTCCTAATGACTACATGACTAGT
CCTGCGAGGCTTGGAAGCCAGCATAGTCCAGGCAGGACGGCTTCTTTAAATCAGAGACCAAGGA
CGCATAGTGGGAGTAGTGGAGGAAGCGGAAGCCGGGAAAACAGTGGGAGCAGCAGCATTGGTAT
TCCCATTGCTGTGCCCACACCCTCCCCGCCCACTGCGGGCCCAGCCCCTGGCGCAGCTCCTGGT
TCCCAGTATGGCACAATGACCAGGCAGATTTCTCGACACAACTCTACCACTTCTTCGACATCTT
CTGGTGGATATAGACGAACTCCCTCTGTGACTGCGCAATTCTCTGCTCAGCCTCATGTTAATGG
AGGTCCACTTTATTCTCAAAATTCAATTGCTGATAGCCCAACTCCACCACCACCTCCTCCACCA
GATGACATTCCCATGTTCGATGACTCTCCACCTCCCCCACCACCTCCTCCTGTGGACTACGAAG
ACGAAGAAGCTGCAGTAGTTCAGTATAGTGACCCATATGCAGATGGGGACCCTGCATGGGCTCC
CAAGAACTATATTGAGAAAGTTGTTGCAATATATGATTATACAAAAGACAAGGATGATGAGCTG
TCCTTTAAAGAGGGTGCAATCATCTATGTCATAAAGAAGAACGATGATGGCTGGTTCGAAGGAG
TTTGCAATCGAGTAACTGGACTCTTCCCTGGGAACTATGTTGAATCAATCATGCACTATACTGA
TTAGTTTTTCTTTCGTTTTCTTTTCATGTAGGTTATTACTCTGTCATACTGTGGGACTATATGG
TTAACAATTGTTTTAATGTTTAAAATGTGCCCATATTTTCAGGACATGTTTTATTGGTATATTT
GGATGTCTACCTGTAAGCTTAAAATTTGGAGGCAGTTCAAACGTTGCTGAACAGCAATTGCTGT
CAGACTGCCTGTAATTGATCATGCATATGTACTCACACCTTGATACGTTTATGACCAGCCTAAA
AATTCTGGGGATGTGGGTTATTATGTTTAACAAATCATGGTTCAGAATGCACCATTACATGTTT
CAGTGCAGCATGGTCACTAACATTGTGTCAGACTAATAGGAAAAAAAAAAAACAGAAACTTCAA
TGCTGGTGCTGGTCATACTTTTGGTTTCAATTCTCATTTTTAAAAAAGTACTGTGTTTAAAGCA
TGCATAAATTTTTATGTATTGAAATATACTTAGCAATTCAAGAAGCTTCCAATTTGTGTAAGCG
TTATCTGGAGCACTACTCATACCTGAGTCTCCTAAGTTCTCCACGTGAAATGAAAGACTAGCTG
TATGCTGTAATTTGTATCTAAGTTTTTTAATGAGTGAGATTTGCATTATAAATTTTTCCATTCA
TAAATACATAAGTAAACCAAAGGATTTTTGTCCTCTCCTTTACTGGTTTGCTTTAATCATGTGT
GCTCATGCATATGCATGCACACCCCCAGCCCCTTAAAAAAGATTTATTGCAGAATTATGGTTCT
ATTTTCTCAATGCATCAGTTTGAAAATATTTTTAGCTTAATCTTAATGTGTCCAAACAGCAATG
CGACAGAATTTTGCAGATTTTGGAGCTAGACTGTGTCAGAGTAAGCACATGATATTCTGGGGGT
AACATCTGAAGGAATGCTACACTTGACCTTTTATATTTTAATGAAACTGAATTTACACTGACTC
AGTGAAAGGAAAATCTTTTACATATTGTAAAGATGGATGCAGTTAGTTTGTGGATAGGCATATT
TAATCCATTGCCTGCCACTAGAAACAAAATTTTTACAATAATTGGGAAAGAAACTAGGCCATGT
AATAAGCAGGTTTGTATTGTAACTTAAATGCAACACATGCACTTTGTGTGTCTCCTTGATTTAA
GGGAGGGTTTGAGGGATACTTCTCTTGTATATAAGACTGTACTGCTTAGGATATTAAAGTAGAT
CACACAAGTGTGGGTTTCTATGTATTGAGGGTTACAGATTATGACAGCATAGTAAGTGATGAGA
GCAGTGCAAAATATTTCTGAAAATTAAAGACCATTGTTCCTACCAAA

hide sequence

RefSeq Acc Id:

XM_006254358 ⟹ XP_006254420

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	90,006,917 - 90,087,968 (-)	NCBI
mRatBN7.2	17	85,098,837 - 85,179,824 (-)	NCBI
Rnor_6.0	17	89,951,682 - 90,033,158 (+)	NCBI
Rnor_5.0	17	91,617,052 - 91,698,739 (+)	NCBI

Sequence:

show sequence

AGGTGCAGTCCCACAATACCCGGCGGAGGGCGGGTGGGTGGTTAGTGTCTGATCTCTGCGGCGC
TTCGGTCCCCGTCGGACTCAGCTGCCTCTGTCTCTTTAACGCGAGAGGAAGCGATGCGGAGGGG
TGGAAAATGGCAGAGCTGCAGATGTTACTAGAGGAGGAGATCCCGTCTGGCAAGAGGGCGCTGA
TAGAGAGTTACCAGAACCTGACCCGGGTGGCGGACTACTGTGAAAACAACTACATACAGGCTAC
AGACAAGAGGAAAGCTCTAGAAGAGACCAAAGCATATACAACTCAATCTCTAGCTAGTGTTGCT
TATCAAATAAATGCATTGGCCAACAATGTGCTCCAGCTGCTGGATATCCAGGCCTCTCAGCTGC
GGAGGATGGAGTCGTCCATCAATCACATCTCACAGACTGTGGATATTCATAAAGAAAAAGTGGC
TCGAAGAGAGATTGGTATTTTGACAACAAATAAGAATACATCAAGAACTCATAAAATAATCGCA
CCTGCAAATATGGAGCGTCCTGTCAGGTATATTCGGAAACCTATTGACTACACAGTTCTGGATG
ATGTGGGCCATGGAGTTAAGTGGCTAAAAGCCAAGCACGGAAATAACCAGCCTGCAAGAACTGG
CACATTGTCGAGAACAAATCCTCCCACGCAGAAACCACCAAGCCCTCCTGTGTCAGGCCGAGGA
ACTTTGGGGCGGAATACCCCTTACAAAACCCTAGAGCCTGTTAAGCCTCCCACAGTTCCTAATG
ACTACATGACTAGTCCTGCGAGGCTTGGAAGCCAGCATAGTCCAGGCAGGACGGCTTCTTTAAA
TCAGAGACCAAGGACGCATAGTGGGAGTAGTGGAGGAAGCGGAAGCCGGGAAAACAGTGGGAGC
AGCAGCATTGGTATTCCCATTGCTGTGCCCACACCCTCCCCGCCCACTGCGGGCCCAGTTGCTG
ATAGCCCAACTCCACCACCACCTCCTCCACCAGATGACATTCCCATGTTCGATGACTCTCCACC
TCCCCCACCACCTCCTCCTGTGGACTACGAAGACGAAGAAGCTGCAGTAGTTCAGTATAGTGAC
CCATATGCAGATGGGGACCCTGCATGGGCTCCCAAGAACTATATTGAGAAAGTTGTTGCAATAT
ATGATTATACAAAAGACAAGGATGATGAGCTGTCCTTTAAAGAGGGTGCAATCATCTATGTCAT
AAAGAAGAACGATGATGGCTGGTTCGAAGGAGTTTGCAATCGAGTAACTGGACTCTTCCCTGGG
AACTATGTTGAATCAATCATGCACTATACTGATTAGTTTTTCTTTCGTTTTCTTTTCATGTAGG
TTATTACTCTGTCATACTGTGGGACTATATGGTTAACAATTGTTTTAATGTTTAAAATGTGCCC
ATATTTTCAGGACATGTTTTATTGGTATATTTGGATGTCTACCTGTAAGCTTAAAATTTGGAGG
CAGTTCAAACGTTGCTGAACAGCAATTGCTGTCAGACTGCCTGTAATTGATCATGCATATGTAC
TCACACCTTGATACGTTTATGACCAGCCTAAAAATTCTGGGGATGTGGGTTATTATGTTTAACA
AATCATGGTTCAGAATGCACCATTACATGTTTCAGTGCAGCATGGTCACTAACATTGTGTCAGA
CTAATAGGAAAAAAAAAAAACAGAAACTTCAATGCTGGTGCTGGTCATACTTTTGGTTTCAATT
CTCATTTTTAAAAAAGTACTGTGTTTAAAGCATGCATAAATTTTTATGTATTGAAATATACTTA
GCAATTCAAGAAGCTTCCAATTTGTGTAAGCGTTATCTGGAGCACTACTCATACCTGAGTCTCC
TAAGTTCTCCACGTGAAATGAAAGACTAGCTGTATGCTGTAATTTGTATCTAAGTTTTTTAATG
AGTGAGATTTGCATTATAAATTTTTCCATTCATAAATACATAAGTAAACCAAAGGATTTTTGTC
CTCTCCTTTACTGGTTTGCTTTAATCATGTGTGCTCATGCATATGCATGCACACCCCCAGCCCC
TTAAAAAAGATTTATTGCAGAATTATGGTTCTATTTTCTCAATGCATCAGTTTGAAAATATTTT
TAGCTTAATCTTAATGTGTCCAAACAGCAATGCGACAGAATTTTGCAGATTTTGGAGCTAGACT
GTGTCAGAGTAAGCACATGATATTCTGGGGGTAACATCTGAAGGAATGCTACACTTGACCTTTT
ATATTTTAATGAAACTGAATTTACACTGACTCAGTGAAAGGAAAATCTTTTACATATTGTAAAG
ATGGATGCAGTTAGTTTGTGGATAGGCATATTTAATCCATTGCCTGCCACTAGAAACAAAATTT
TTACAATAATTGGGAAAGAAACTAGGCCATGTAATAAGCAGGTTTGTATTGTAACTTAAATGCA
ACACATGCACTTTGTGTGTCTCCTTGATTTAAGGGAGGGTTTGAGGGATACTTCTCTTGTATAT
AAGACTGTACTGCTTAGGATATTAAAGTAGATCACACAAGTGTGGGTTTCTATGTATTGAGGGT
TACAGATTATGACAGCATAGTAAGTGATGAGAGCAGTGCAAAATATTTCTGAAAATTAAAGACC
ATTGTTCCTACCAAA

hide sequence

RefSeq Acc Id:

XM_006254359 ⟹ XP_006254421

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	90,006,917 - 90,087,990 (-)	NCBI
mRatBN7.2	17	85,098,837 - 85,179,824 (-)	NCBI
Rnor_6.0	17	89,951,682 - 90,033,158 (+)	NCBI
Rnor_5.0	17	91,617,052 - 91,698,739 (+)	NCBI

Sequence:

show sequence

AGGTGCAGTCCCACAATACCCGGCGGAGGGCGGGTGGGTGGTTAGTGTCTGATCTCTGCGGCGC
TTCGGTCCCCGTCGGACTCAGCTGCCTCTGTCTCTTTAACGCGAGAGGAAGCGATGCGGAGGGG
TGGAAAATGGCAGAGCTGCAGATGTTACTAGAGGAGGAGATCCCGTCTGGCAAGAGGGCGCTGA
TAGAGAGTTACCAGAACCTGACCCGGGTGGCGGACTACTGTGAAAACAACTACATACAGGCTAC
AGACAAGAGGAAAGCTCTAGAAGAGACCAAAGCATATACAACTCAATCTCTAGCTAGTGTTGCT
TATCAAATAAATGCATTGGCCAACAATGTGCTCCAGCTGCTGGATATCCAGGCCTCTCAGCTGC
GGAGGATGGAGTCGTCCATCAATCACATCTCACAGACTGTGGATATTCATAAAGAAAAAGTGGC
TCGAAGAGAGATTGGTATTTTGACAACAAATAAGAATACATCAAGAACTCATAAAATAATCGCA
CCTGCAAATATGGAGCGTCCTGTCAGGTATATTCGGAAACCTATTGACTACACAGTTCTGGATG
ATGTGGGCCATGGAGTTAAGCACGGAAATAACCAGCCTGCAAGAACTGGCACATTGTCGAGAAC
AAATCCTCCCACGCAGAAACCACCAAGCCCTCCTGTGTCAGGCCGAGGAACTTTGGGGCGGAAT
ACCCCTTACAAAACCCTAGAGCCTGTTAAGCCTCCCACAGTTCCTAATGACTACATGACTAGTC
CTGCGAGGCTTGGAAGCCAGCATAGTCCAGGCAGGACGGCTTCTTTAAATCAGAGACCAAGGAC
GCATAGTGGGAGTAGTGGAGGAAGCGGAAGCCGGGAAAACAGTGGGAGCAGCAGCATTGGTATT
CCCATTGCTGTGCCCACACCCTCCCCGCCCACTGCGGGCCCAGTTGCTGATAGCCCAACTCCAC
CACCACCTCCTCCACCAGATGACATTCCCATGTTCGATGACTCTCCACCTCCCCCACCACCTCC
TCCTGTGGACTACGAAGACGAAGAAGCTGCAGTAGTTCAGTATAGTGACCCATATGCAGATGGG
GACCCTGCATGGGCTCCCAAGAACTATATTGAGAAAGTTGTTGCAATATATGATTATACAAAAG
ACAAGGATGATGAGCTGTCCTTTAAAGAGGGTGCAATCATCTATGTCATAAAGAAGAACGATGA
TGGCTGGTTCGAAGGAGTTTGCAATCGAGTAACTGGACTCTTCCCTGGGAACTATGTTGAATCA
ATCATGCACTATACTGATTAGTTTTTCTTTCGTTTTCTTTTCATGTAGGTTATTACTCTGTCAT
ACTGTGGGACTATATGGTTAACAATTGTTTTAATGTTTAAAATGTGCCCATATTTTCAGGACAT
GTTTTATTGGTATATTTGGATGTCTACCTGTAAGCTTAAAATTTGGAGGCAGTTCAAACGTTGC
TGAACAGCAATTGCTGTCAGACTGCCTGTAATTGATCATGCATATGTACTCACACCTTGATACG
TTTATGACCAGCCTAAAAATTCTGGGGATGTGGGTTATTATGTTTAACAAATCATGGTTCAGAA
TGCACCATTACATGTTTCAGTGCAGCATGGTCACTAACATTGTGTCAGACTAATAGGAAAAAAA
AAAAACAGAAACTTCAATGCTGGTGCTGGTCATACTTTTGGTTTCAATTCTCATTTTTAAAAAA
GTACTGTGTTTAAAGCATGCATAAATTTTTATGTATTGAAATATACTTAGCAATTCAAGAAGCT
TCCAATTTGTGTAAGCGTTATCTGGAGCACTACTCATACCTGAGTCTCCTAAGTTCTCCACGTG
AAATGAAAGACTAGCTGTATGCTGTAATTTGTATCTAAGTTTTTTAATGAGTGAGATTTGCATT
ATAAATTTTTCCATTCATAAATACATAAGTAAACCAAAGGATTTTTGTCCTCTCCTTTACTGGT
TTGCTTTAATCATGTGTGCTCATGCATATGCATGCACACCCCCAGCCCCTTAAAAAAGATTTAT
TGCAGAATTATGGTTCTATTTTCTCAATGCATCAGTTTGAAAATATTTTTAGCTTAATCTTAAT
GTGTCCAAACAGCAATGCGACAGAATTTTGCAGATTTTGGAGCTAGACTGTGTCAGAGTAAGCA
CATGATATTCTGGGGGTAACATCTGAAGGAATGCTACACTTGACCTTTTATATTTTAATGAAAC
TGAATTTACACTGACTCAGTGAAAGGAAAATCTTTTACATATTGTAAAGATGGATGCAGTTAGT
TTGTGGATAGGCATATTTAATCCATTGCCTGCCACTAGAAACAAAATTTTTACAATAATTGGGA
AAGAAACTAGGCCATGTAATAAGCAGGTTTGTATTGTAACTTAAATGCAACACATGCACTTTGT
GTGTCTCCTTGATTTAAGGGAGGGTTTGAGGGATACTTCTCTTGTATATAAGACTGTACTGCTT
AGGATATTAAAGTAGATCACACAAGTGTGGGTTTCTATGTATTGAGGGTTACAGATTATGACAG
CATAGTAAGTGATGAGAGCAGTGCAAAATATTTCTGAAAATTAAAGACCATTGTTCCTACCAAA

hide sequence

RefSeq Acc Id:

XM_006254360 ⟹ XP_006254422

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	90,006,917 - 90,087,968 (-)	NCBI
mRatBN7.2	17	85,098,837 - 85,179,829 (-)	NCBI
Rnor_6.0	17	89,951,662 - 90,033,158 (+)	NCBI
Rnor_5.0	17	91,617,052 - 91,698,739 (+)	NCBI

Sequence:

show sequence

GAGTAAAGAGGAAGAGGAGGAGGTGCAGTCCCACAATACCCGGCGGAGGGCGGGTGGGTGGTTA
GTGTCTGATCTCTGCGGCGCTTCGGTCCCCGTCGGACTCAGCTGCCTCTGTCTCTTTAACGCGA
GAGGAAGCGATGCGGAGGGGTGGAAAATGGCAGAGCTGCAGATGTTACTAGAGGAGGAGATCCC
GTCTGGCAAGAGGGCGCTGATAGAGAGTTACCAGAACCTGACCCGGGTGGCGGACTACTGTGAA
AACAACTACATACAGGCTACAGACAAGAGGAAAGCTCTAGAAGAGACCAAAGCATATACAACTC
AATCTCTAGCTAGTGTTGCTTATCAAATAAATGCATTGGCCAACAATGTGCTCCAGCTGCTGGA
TATCCAGGCCTCTCAGCTGCGGAGGATGGAGTCGTCCATCAATCACATCTCACAGACTGTGGAT
ATTCATAAAGAAAAAGTGGCTCGAAGAGAGATTGGTATTTTGACAACAAATAAGAATACATCAA
GAACTCATAAAATAATCGCACCTGCAAATATGGAGCGTCCTGTCAGGTATATTCGGAAACCTAT
TGACTACACAGTTCTGGATGATGTGGGCCATGGAGTTAAGTGGCTAAAAGCCAAGCACGGAAAT
AACCAGCCTGCAAGAACTGGCACATTGTCGAGAACAAATCCTCCCACGCAGAAACCACCAAGCC
CTCCTGTGTCAGGCCGAGGAACTTTGGGGCGGAATACCCCTTACAAAACCCTAGAGCCTGTTAA
GCCTCCCACAGTTCCTAATGACTACATGACTAGTCCTGCGAGGCTTGGAAGCCAGCATAGTCCA
GGCAGGACGGCTTCTTTAAATCAGAGACCAAGGACGCATAGTGGGAGTAGTGGAGGAAGCGGAA
GCCGGGAAAACAGTGGGAGCAGCAGCATTGGTATTCCCATTGCTGTGCCCACACCCTCCCCGCC
CACTGCGGGCCCAGCCCCTGGCGCAGCTCCTGGTTCCCAGTATGGCACAATGACCAGGCAGATT
TCTCGACACAACTCTACCACTTCTTCGACATCTTCTGGTGGATATAGACGAACTCCCTCTGTGA
CTGCGCAATTCTCTGCTCAGCCTCATGTTAATGGAGGTCCACTTTATTCTCAAAATTCAATTGC
TGATAGCCCAACTCCACCACCACCTCCTCCACCAGATGACATTCCCATGTTCGATGACTCTCCA
CCTCCCCCACCACCTCCTCCTGTGGACTACGAAGACGAAGAAGCTGCAGTAGTTCAGTATAGTG
ACCCATATGCAGATGGGGACCCTGCATGGGCTCCCAAGAACTATATTGAGAAAGTTGTTGCAAT
ATATGATTATACAAAAGACAAGGATGATGAGCTGTCCTTTAAAGAGGGTGCAATCATCTATGTC
ATAAAGAAGAACGATGATGGCTGGTTCGAAGGAGTTTGCAATCGAGTAACTGGACTCTTCCCTG
GGAACTATGTTGAATCAATCATGCACTATACTGATTAGTTTTTCTTTCGTTTTCTTTTCATGTA
GGTTATTACTCTGTCATACTGTGGGACTATATGGTTAACAATTGTTTTAATGTTTAAAATGTGC
CCATATTTTCAGGACATGTTTTATTGGTATATTTGGATGTCTACCTGTAAGCTTAAAATTTGGA
GGCAGTTCAAACGTTGCTGAACAGCAATTGCTGTCAGACTGCCTGTAATTGATCATGCATATGT
ACTCACACCTTGATACGTTTATGACCAGCCTAAAAATTCTGGGGATGTGGGTTATTATGTTTAA
CAAATCATGGTTCAGAATGCACCATTACATGTTTCAGTGCAGCATGGTCACTAACATTGTGTCA
GACTAATAGGAAAAAAAAAAAACAGAAACTTCAATGCTGGTGCTGGTCATACTTTTGGTTTCAA
TTCTCATTTTTAAAAAAGTACTGTGTTTAAAGCATGCATAAATTTTTATGTATTGAAATATACT
TAGCAATTCAAGAAGCTTCCAATTTGTGTAAGCGTTATCTGGAGCACTACTCATACCTGAGTCT
CCTAAGTTCTCCACGTGAAATGAAAGACTAGCTGTATGCTGTAATTTGTATCTAAGTTTTTTAA
TGAGTGAGATTTGCATTATAAATTTTTCCATTCATAAATACATAAGTAAACCAAAGGATTTTTG
TCCTCTCCTTTACTGGTTTGCTTTAATCATGTGTGCTCATGCATATGCATGCACACCCCCAGCC
CCTTAAAAAAGATTTATTGCAGAATTATGGTTCTATTTTCTCAATGCATCAGTTTGAAAATATT
TTTAGCTTAATCTTAATGTGTCCAAACAGCAATGCGACAGAATTTTGCAGATTTTGGAGCTAGA
CTGTGTCAGAGTAAGCACATGATATTCTGGGGGTAACATCTGAAGGAATGCTACACTTGACCTT
TTATATTTTAATGAAACTGAATTTACACTGACTCAGTGAAAGGAAAATCTTTTACATATTGTAA
AGATGGATGCAGTTAGTTTGTGGATAGGCATATTTAATCCATTGCCTGCCACTAGAAACAAAAT
TTTTACAATAATTGGGAAAGAAACTAGGCCATGTAATAAGCAGGTTTGTATTGTAACTTAAATG
CAACACATGCACTTTGTGTGTCTCCTTGATTTAAGGGAGGGTTTGAGGGATACTTCTCTTGTAT
ATAAGACTGTACTGCTTAGGATATTAAAGTAGATCACACAAGTGTGGGTTTCTATGTATTGAGG
GTTACAGATTATGACAGCATAGTAAGTGATGAGAGCAGTGCAAAATATTTCTGAAAATTAAAGA
CCATTGTTCCTACCAAA

hide sequence

RefSeq Acc Id:

XM_039096101 ⟹ XP_038952029

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	90,006,917 - 90,088,002 (-)	NCBI
mRatBN7.2	17	85,098,837 - 85,179,825 (-)	NCBI

RefSeq Acc Id:

XM_039096103 ⟹ XP_038952031

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	90,006,917 - 90,079,403 (-)	NCBI
mRatBN7.2	17	85,098,837 - 85,158,169 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_077373	(Get FASTA)	NCBI Sequence Viewer
	XP_006254415	(Get FASTA)	NCBI Sequence Viewer
	XP_006254416	(Get FASTA)	NCBI Sequence Viewer
	XP_006254417	(Get FASTA)	NCBI Sequence Viewer
	XP_006254418	(Get FASTA)	NCBI Sequence Viewer
	XP_006254419	(Get FASTA)	NCBI Sequence Viewer
	XP_006254420	(Get FASTA)	NCBI Sequence Viewer
	XP_006254421	(Get FASTA)	NCBI Sequence Viewer
	XP_006254422	(Get FASTA)	NCBI Sequence Viewer
	XP_038952029	(Get FASTA)	NCBI Sequence Viewer
	XP_038952031	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD55263	(Get FASTA)	NCBI Sequence Viewer
	AAI29093	(Get FASTA)	NCBI Sequence Viewer
	EDL83933	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000054381.4
	ENSRNOP00000071079.2
	ENSRNOP00000081022.1
	ENSRNOP00000085236.1
	ENSRNOP00000093871.1
GenBank Protein	Q9QZM5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_077373 ⟸ NM_024397

- UniProtKB:

A2VD09 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLASVAYQ
INALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPA
NMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQKPPSPPVSGRGTL
GRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHSGSSGGSGSRENSGSSS
IGIPIAVPTPSPPTAGPAAPGAAPGSQYGTMTRQISRHNSTTSSTSSGGYRRTPSVTAQFSAQP
HVNGGPLYSQNSISIAPPPPPMPQLTPQIPLTGFVARVQENIADSPTPPPPPPPDDIPMFDDSP
PPPPPPPVDYEDEEAAVVQYSDPYADGDPAWAPKNYIEKVVAIYDYTKDKDDELSFKEGAIIYV
IKKNDDGWFEGVCNRVTGLFPGNYVESIMHYTD

hide sequence

RefSeq Acc Id:

XP_006254422 ⟸ XM_006254360

- Peptide Label:

isoform X5

- Sequence:

show sequence

MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLASVAYQ
INALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPA
NMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQKPPSPPVSGRGTL
GRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHSGSSGGSGSRENSGSSS
IGIPIAVPTPSPPTAGPAPGAAPGSQYGTMTRQISRHNSTTSSTSSGGYRRTPSVTAQFSAQPH
VNGGPLYSQNSIADSPTPPPPPPPDDIPMFDDSPPPPPPPPVDYEDEEAAVVQYSDPYADGDPA
WAPKNYIEKVVAIYDYTKDKDDELSFKEGAIIYVIKKNDDGWFEGVCNRVTGLFPGNYVESIMH
YTD

hide sequence

RefSeq Acc Id:

XP_006254418 ⟸ XM_006254356

- Peptide Label:

isoform X4

- Sequence:

show sequence

MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLASVAYQ
INALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPA
NMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQKPPSPPVSGRGTL
GRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHSGSSGGSGSRENSGSSS
IGIPIAVPTPSPPTAGPAAPGAAPGSQYGTMTRQISRHNSTTSSTSSGGYRRTPSVTAQFSAQP
HVNGGPLYSQNSIADSPTPPPPPPPDDIPMFDDSPPPPPPPPVDYEDEEAAVVQYSDPYADGDP
AWAPKNYIEKVVAIYDYTKDKDDELSFKEGAIIYVIKKNDDGWFEGVCNRVTGLFPGNYVESIM
HYTD

hide sequence

RefSeq Acc Id:

XP_006254415 ⟸ XM_006254353

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLASVAYQ
INALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPA
NMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQKPPSPPVSGRGTL
GRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHSGSSGGSGSRENSGSSS
IGIPIAVPTPSPPTAGPAPGAAPGSQYGTMTRQISRHNSTTSSTSSGGYRRTPSVTAQFSAQPH
VNGGPLYSQNSISIAPPPPPMPQLTPQIPLTGFVARVQENIADSPTPPPPPPPDDIPMFDDSPP
PPPPPPVDYEDEEAAVVQYSDPYADGDPAWAPKNYIEKVVAIYDYTKDKDDELSFKEGAIIYVI
KKNDDGWFEGVCNRVTGLFPGNYVESIMHYTD

hide sequence

RefSeq Acc Id:	XP_006254420 ⟸ XM_006254358
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I5ZQS1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLASVAYQ INALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPA NMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQKPPSPPVSGRGTL GRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHSGSSGGSGSRENSGSSS IGIPIAVPTPSPPTAGPVADSPTPPPPPPPDDIPMFDDSPPPPPPPPVDYEDEEAAVVQYSDPY ADGDPAWAPKNYIEKVVAIYDYTKDKDDELSFKEGAIIYVIKKNDDGWFEGVCNRVTGLFPGNY VESIMHYTD hide sequence

RefSeq Acc Id:	XP_006254416 ⟸ XM_006254354
- Peptide Label:	isoform X2
- UniProtKB:	Q9QZM5 (UniProtKB/Swiss-Prot), A6KRZ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLASVAYQ INALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPA NMERPVRYIRKPIDYTVLDDVGHGVKHGNNQPARTGTLSRTNPPTQKPPSPPVSGRGTLGRNTP YKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHSGSSGGSGSRENSGSSSIGIPI AVPTPSPPTAGPAAPGAAPGSQYGTMTRQISRHNSTTSSTSSGGYRRTPSVTAQFSAQPHVNGG PLYSQNSISIAPPPPPMPQLTPQIPLTGFVARVQENIADSPTPPPPPPPDDIPMFDDSPPPPPP PPVDYEDEEAAVVQYSDPYADGDPAWAPKNYIEKVVAIYDYTKDKDDELSFKEGAIIYVIKKND DGWFEGVCNRVTGLFPGNYVESIMHYTD hide sequence

RefSeq Acc Id:	XP_006254417 ⟸ XM_006254355
- Peptide Label:	isoform X3
- UniProtKB:	A0A8L2UQ93 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLASVAYQ INALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPA NMERPVRYIRKPIDYTVLDDVGHGVKHGNNQPARTGTLSRTNPPTQKPPSPPVSGRGTLGRNTP YKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHSGSSGGSGSRENSGSSSIGIPI AVPTPSPPTAGPAPGAAPGSQYGTMTRQISRHNSTTSSTSSGGYRRTPSVTAQFSAQPHVNGGP LYSQNSISIAPPPPPMPQLTPQIPLTGFVARVQENIADSPTPPPPPPPDDIPMFDDSPPPPPPP PVDYEDEEAAVVQYSDPYADGDPAWAPKNYIEKVVAIYDYTKDKDDELSFKEGAIIYVIKKNDD GWFEGVCNRVTGLFPGNYVESIMHYTD hide sequence

RefSeq Acc Id:

XP_006254419 ⟸ XM_006254357

- Peptide Label:

isoform X7

- Sequence:

show sequence

MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLASVAYQ
INALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPA
NMERPVRYIRKPIDYTVLDDVGHGVKHGNNQPARTGTLSRTNPPTQKPPSPPVSGRGTLGRNTP
YKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHSGSSGGSGSRENSGSSSIGIPI
AVPTPSPPTAGPAPGAAPGSQYGTMTRQISRHNSTTSSTSSGGYRRTPSVTAQFSAQPHVNGGP
LYSQNSIADSPTPPPPPPPDDIPMFDDSPPPPPPPPVDYEDEEAAVVQYSDPYADGDPAWAPKN
YIEKVVAIYDYTKDKDDELSFKEGAIIYVIKKNDDGWFEGVCNRVTGLFPGNYVESIMHYTD

hide sequence

RefSeq Acc Id:

XP_006254421 ⟸ XM_006254359

- Peptide Label:

isoform X10

- Sequence:

show sequence

MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLASVAYQ
INALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSRTHKIIAPA
NMERPVRYIRKPIDYTVLDDVGHGVKHGNNQPARTGTLSRTNPPTQKPPSPPVSGRGTLGRNTP
YKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHSGSSGGSGSRENSGSSSIGIPI
AVPTPSPPTAGPVADSPTPPPPPPPDDIPMFDDSPPPPPPPPVDYEDEEAAVVQYSDPYADGDP
AWAPKNYIEKVVAIYDYTKDKDDELSFKEGAIIYVIKKNDDGWFEGVCNRVTGLFPGNYVESIM
HYTD

hide sequence

Ensembl Acc Id:

ENSRNOP00000054381 ⟸ ENSRNOT00000057572

Ensembl Acc Id:

ENSRNOP00000071079 ⟸ ENSRNOT00000091023

RefSeq Acc Id:	XP_038952029 ⟸ XM_039096101
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6AGM2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038952031 ⟸ XM_039096103
- Peptide Label:	isoform X8

Ensembl Acc Id:

ENSRNOP00000081022 ⟸ ENSRNOT00000093928

Ensembl Acc Id:

ENSRNOP00000093871 ⟸ ENSRNOT00000108948

Ensembl Acc Id:

ENSRNOP00000085236 ⟸ ENSRNOT00000103736

Protein Domains

SH3 t-SNARE coiled-coil homology

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9QZM5-F1-model_v2	AlphaFold	Q9QZM5	1-476	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700617

Promoter ID:

EPDNEW_R11140

Type:

initiation region

Name:

Abi1_1

Description:

abl-interactor 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	89,951,725 - 89,951,785	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621008	AgrOrtholog
BioCyc Gene	G2FUF-8481	BioCyc
Ensembl Genes	ENSRNOG00000031325	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000057572.5	UniProtKB/TrEMBL
	ENSRNOT00000091023.2	UniProtKB/TrEMBL
	ENSRNOT00000093928.1	UniProtKB/TrEMBL
	ENSRNOT00000103736.1	UniProtKB/TrEMBL
	ENSRNOT00000108948.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.1620	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7192971	IMAGE-MGC_LOAD
InterPro	ABI	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Abi1_SH3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Abl-interactor_HHR_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3_domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	T_SNARE_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:79249	UniProtKB/TrEMBL
MGC_CLONE	MGC:156634	IMAGE-MGC_LOAD
NCBI Gene	79249	ENTREZGENE
PANTHER	PTHR10460	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR10460:SF2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Abi_HHR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Abi1	PhenoGen
PRINTS	P67PHOX	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3DOMAIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	SH3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	T_SNARE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000031325	RatGTEx
SMART	SH3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF50044	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZQS1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A0X0_RAT	UniProtKB/TrEMBL
	A0A8I6AGM2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UQ93	ENTREZGENE, UniProtKB/TrEMBL
	A2VD09	ENTREZGENE, UniProtKB/TrEMBL
	A6KRZ5	ENTREZGENE, UniProtKB/TrEMBL
	ABI1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-01-20	Abi1	abl-interactor 1		eps8 binding protein (e3B1), alternatively spliced	Name updated	1299863	APPROVED
2002-08-07	Abi1	eps8 binding protein (e3B1), alternatively spliced			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)