LOC120101827 (60S ribosomal protein L19-like) - Rat Genome Database

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Gene: LOC120101827 (60S ribosomal protein L19-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC120101827
Name: 60S ribosomal protein L19-like
RGD ID: 41350938
Description: Predicted to be involved in translation.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AC127963.1; large ribosomal subunit protein eL19-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83185,768,145 - 185,769,129 (-)NCBIGRCr8
mRatBN7.23165,390,485 - 165,391,421 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3165,390,485 - 165,391,312 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl3173,838,720 - 173,839,433 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in LOC120101827
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3145925360166177555Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145925360166177555Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3145925360166177555Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3145925360166177555Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3145925360166177555Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3145925360166177555Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3161192952169034231Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3145925360166177555Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063285327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000075547   ⟹   ENSRNOP00000067793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3165,390,485 - 165,391,312 (-)Ensembl
RefSeq Acc Id: XM_063285327   ⟹   XP_063141397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83185,768,145 - 185,769,129 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063141397 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000067793.3
Ensembl Acc Id: ENSRNOP00000067793   ⟸   ENSRNOT00000075547
RefSeq Acc Id: XP_063141397   ⟸   XM_063285327
- UniProtKB: M0RDT4 (UniProtKB/TrEMBL)
Protein Domains
Large ribosomal subunit protein eL19

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RDT4-F1-model_v2 AlphaFold M0RDT4 1-188 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-46402 BioCyc
Ensembl Genes ENSRNOG00000048080 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075547.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1200.240 UniProtKB/TrEMBL
  1.10.1650.10 UniProtKB/TrEMBL
InterPro 60S_ribosomal_L19/L19e_sf UniProtKB/TrEMBL
  Ribosomal_L19/L19e UniProtKB/TrEMBL
  Ribosomal_L19/L19e_dom1 UniProtKB/TrEMBL
  Ribosomal_L19_euka UniProtKB/TrEMBL
  RPL19 UniProtKB/TrEMBL
NCBI Gene LOC120101827 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L19 UniProtKB/TrEMBL
  PTHR10722 UniProtKB/TrEMBL
Pfam Ribosomal_L19e UniProtKB/TrEMBL
PhenoGen LOC120101827 PhenoGen
RatGTEx ENSRNOG00000048080 RatGTEx
SMART Ribosomal_L19e UniProtKB/TrEMBL
Superfamily-SCOP SSF48140 UniProtKB/TrEMBL
UniProt M0RDT4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120101827  60S ribosomal protein L19-like  AC127963.1    Data merged from RGD:15005427 737654 PROVISIONAL
2021-01-27 LOC120101827  60S ribosomal protein L19-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AC127963.1        Symbol and Name status set to provisional 45752 PROVISIONAL