LOC120094615 (uncharacterized LOC120094615) - Rat Genome Database

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Gene: LOC120094615 (uncharacterized LOC120094615) Rattus norvegicus
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Symbol: LOC120094615
Name: uncharacterized LOC120094615
RGD ID: 41342146
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ENSRNOG00000068213; uncharacterized protein LOC120094615
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr892,921,015 - 2,967,025 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl912,231,286 - 12,232,182 (-)EnsemblGRCr8
GRCr8 Ensembl911,429,481 - 11,524,257 (-)EnsemblGRCr8
mRatBN7.293,009,109 - 3,017,536 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl93,015,400 - 3,017,533 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl93,015,400 - 3,017,533 (-)EnsemblmRatBN7.2
Cytogenetic Map9q11NCBI
JBrowse:




References

Genomics

Variants

.
Variants in LOC120094615
653 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631533Iresp3Immunoglobin response QTL316.2blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)916094576Rat
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9121707400Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)949664545496645Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)949664545496645Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)9131250552Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)949664545496645Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9141763315Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000049746   ⟹   ENSRNOP00000048934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl911,429,481 - 11,524,257 (-)Ensembl
mRatBN7.2 Ensembl93,015,400 - 3,017,533 (-)Ensembl
RefSeq Acc Id: XM_063267828   ⟹   XP_063123898
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,921,016 - 2,967,025 (+)NCBI
RefSeq Acc Id: XM_063267829   ⟹   XP_063123899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,921,015 - 2,940,582 (+)NCBI
RefSeq Acc Id: XM_063267830   ⟹   XP_063123900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,921,015 - 2,967,025 (+)NCBI
RefSeq Acc Id: XM_063267831   ⟹   XP_063123901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,958,945 - 2,967,025 (+)NCBI
Ensembl Acc Id: ENSRNOP00000048934   ⟸   ENSRNOT00000049746
RefSeq Acc Id: XP_063123900   ⟸   XM_063267830
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JZD4 (UniProtKB/TrEMBL),   F1LWG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123899   ⟸   XM_063267829
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JZD4 (UniProtKB/TrEMBL),   F1LWG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123898   ⟸   XM_063267828
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JZD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123901   ⟸   XM_063267831
- Peptide Label: isoform X4
- UniProtKB: M0R9R6 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-28450 BioCyc
Ensembl Genes ENSRNOG00000064862 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000068213 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000075069 UniProtKB/TrEMBL
  ENSRNOG00000076353 UniProtKB/TrEMBL
  ENSRNOG00000084016 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000049746.6 UniProtKB/TrEMBL
  ENSRNOT00000071620.4 UniProtKB/TrEMBL
  ENSRNOT00000112108.2 UniProtKB/TrEMBL
  ENSRNOT00000145658.1 UniProtKB/TrEMBL
  ENSRNOT00000159056.1 UniProtKB/TrEMBL
InterPro DUF622 UniProtKB/TrEMBL
NCBI Gene LOC120094615 ENTREZGENE
PANTHER 2610042L04RIK PROTEIN-RELATED UniProtKB/TrEMBL
  SPEER/SPETEX UniProtKB/TrEMBL
Pfam Takusan UniProtKB/TrEMBL
PhenoGen LOC120094615 PhenoGen
RatGTEx ENSRNOG00000064862 RatGTEx
  ENSRNOG00000068213 RatGTEx
  ENSRNOG00000075069 RatGTEx
  ENSRNOG00000076353 RatGTEx
  ENSRNOG00000084016 RatGTEx
UniProt A0A0G2JZD4 ENTREZGENE
  A0ABK0LRY5_RAT UniProtKB/TrEMBL
  E9PU76_RAT UniProtKB/TrEMBL
  F1LWG9 ENTREZGENE
  M0R9R6 ENTREZGENE
  Q0P5Q7_RAT UniProtKB/TrEMBL
UniProt Secondary A0A8I6AHR2 UniProtKB/TrEMBL
  M0R9R6 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120094615  uncharacterized LOC120094615  ENSRNOG00000068213    Data merged from RGD:150345728 737654 PROVISIONAL
2021-08-31 ENSRNOG00000068213        Symbol and Name status set to provisional 45752 PROVISIONAL
2021-01-27 LOC120094615  uncharacterized LOC120094615      Symbol and Name status set to provisional 70820 PROVISIONAL