LOC120101325 (small nucleolar RNA SNORA17) - Rat Genome Database

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Gene: LOC120101325 (small nucleolar RNA SNORA17) Rattus norvegicus
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Symbol: LOC120101325
Name: small nucleolar RNA SNORA17
RGD ID: 41008983
Description: Predicted to be involved in RNA processing. Predicted to be located in nucleolus.
Type: snorna
RefSeq Status: MODEL
Previously known as: AC098423.1
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8210,070,519 - 10,070,646 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl210,070,519 - 10,070,646 (-)EnsemblGRCr8
mRatBN7.228,334,732 - 8,334,859 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl28,334,732 - 8,334,859 (-)EnsemblmRatBN7.2
Rnor_6.0 Ensembl25,855,309 - 5,855,436 (-)NCBIrn6Rnor6.0
Cytogenetic Map2q11NCBI
JBrowse:




References

Genomics

Variants

.
Variants in LOC120101325
1 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358144538110Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358154623581Rat
61368Mcs1Mammary carcinoma susceptibility QTL 14.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358125054526Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005501696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000077115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl210,070,519 - 10,070,646 (-)Ensembl
mRatBN7.2 Ensembl28,334,732 - 8,334,859 (-)Ensembl
RefSeq Acc Id: XR_005501696
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8210,070,519 - 10,070,646 (-)NCBI
mRatBN7.228,334,732 - 8,334,859 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-55038 BioCyc
Ensembl Genes ENSRNOG00000059275 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000077115 ENTREZGENE
NCBI Gene LOC120101325 ENTREZGENE
PhenoGen LOC120101325 PhenoGen
RatGTEx ENSRNOG00000059275 RatGTEx
RNAcentral URS00006DF4A4 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120101325  small nucleolar RNA SNORA17  AC098423.1    Data merged from RGD:15012445 737654 PROVISIONAL
2021-01-26 LOC120101325  small nucleolar RNA SNORA17      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AC098423.1        Symbol and Name status set to provisional 45752 PROVISIONAL