Galnt6 (polypeptide N-acetylgalactosaminyltransferase 6) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Galnt6 (polypeptide N-acetylgalactosaminyltransferase 6) Rattus norvegicus
Analyze
Symbol: Galnt6
Name: polypeptide N-acetylgalactosaminyltransferase 6
RGD ID: 2319726
Description: Predicted to enable polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation via threonine. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in Golgi apparatus. Orthologous to human GALNT6 (polypeptide N-acetylgalactosaminyltransferase 6); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100361647; LOC683264; polypeptide N-acetylgalactosaminyltransferase 6-like; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87133,668,612 - 133,715,909 (-)NCBIGRCr8
mRatBN7.27131,789,836 - 131,828,077 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7131,789,839 - 131,819,661 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7133,591,993 - 133,617,649 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07135,817,580 - 135,843,238 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07135,731,194 - 135,756,892 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07142,322,172 - 142,364,281 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7142,322,172 - 142,352,382 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07140,126,996 - 140,169,063 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47139,457,808 - 139,481,964 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7128,266,012 - 128,291,542 (-)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-palmitoylglycerol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amphetamine  (EXP)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
cobalt dichloride  (ISO)
Cuprizon  (EXP)
D-glucose  (ISO)
dextran sulfate  (ISO)
Dibutyl phosphate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
folic acid  (ISO)
fonofos  (ISO)
fructose  (ISO)
gentamycin  (EXP)
glucose  (ISO)
glycidol  (EXP)
glyphosate  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
methyl methanesulfonate  (ISO)
N-methyl-N-nitrosourea  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (ISO)
parathion  (ISO)
pentanal  (ISO)
perfluorooctanoic acid  (ISO)
potassium chromate  (ISO)
propanal  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
terbufos  (ISO)
tert-butyl hydroperoxide  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tributylstannane  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10464263   PMID:12506059  


Genomics

Comparative Map Data
Galnt6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87133,668,612 - 133,715,909 (-)NCBIGRCr8
mRatBN7.27131,789,836 - 131,828,077 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7131,789,839 - 131,819,661 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7133,591,993 - 133,617,649 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07135,817,580 - 135,843,238 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07135,731,194 - 135,756,892 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07142,322,172 - 142,364,281 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7142,322,172 - 142,352,382 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07140,126,996 - 140,169,063 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47139,457,808 - 139,481,964 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7128,266,012 - 128,291,542 (-)NCBICelera
Cytogenetic Map7q36NCBI
GALNT6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381251,351,252 - 51,391,673 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1251,351,247 - 51,392,867 (-)EnsemblGRCh38hg38GRCh38
GRCh371251,745,036 - 51,785,190 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361250,032,100 - 50,071,467 (-)NCBINCBI36Build 36hg18NCBI36
Build 341250,033,431 - 50,059,832NCBI
Celera1250,547,314 - 50,586,667 (-)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1248,778,778 - 48,818,157 (-)NCBIHuRef
CHM1_11251,712,388 - 51,751,734 (-)NCBICHM1_1
T2T-CHM13v2.01251,314,062 - 51,354,647 (-)NCBIT2T-CHM13v2.0
Galnt6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915100,587,796 - 100,627,257 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15100,589,694 - 100,627,257 (-)EnsemblGRCm39 Ensembl
GRCm3815100,689,915 - 100,729,376 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15100,691,813 - 100,729,376 (-)EnsemblGRCm38mm10GRCm38
MGSCv3715100,520,346 - 100,559,807 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615100,519,848 - 100,557,410 (-)NCBIMGSCv36mm8
Celera15102,843,144 - 102,873,752 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.39NCBI
Galnt6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555471,825,716 - 1,859,325 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555471,828,767 - 1,859,327 (-)NCBIChiLan1.0ChiLan1.0
GALNT6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21042,789,178 - 42,835,106 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11242,788,717 - 42,831,868 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01237,361,418 - 37,401,927 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11238,246,778 - 38,287,184 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1238,247,129 - 38,286,570 (+)Ensemblpanpan1.1panPan2
GALNT6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1273,507,314 - 3,539,263 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl273,507,333 - 3,537,480 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2742,718,762 - 42,754,668 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0273,497,184 - 3,533,094 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl273,497,119 - 3,584,139 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1273,515,887 - 3,551,740 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0273,502,424 - 3,538,258 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02743,116,201 - 43,152,083 (-)NCBIUU_Cfam_GSD_1.0
Galnt6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494564,196,707 - 64,233,491 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365128,933,074 - 8,967,089 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365128,932,129 - 8,960,494 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALNT6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.2517,455,646 - 17,463,899 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GALNT6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11147,549,775 - 47,589,696 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1147,548,801 - 47,577,605 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037198,504,477 - 198,545,458 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Galnt6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624816860,703 - 900,484 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624816860,124 - 899,679 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Galnt6
233 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:106
Count of miRNA genes:76
Interacting mature miRNAs:82
Transcripts:ENSRNOT00000048488
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 49 111 91 90 59 25 59 6 217 96 91 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000048488   ⟹   ENSRNOP00000042281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7142,323,622 - 142,352,382 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000078848   ⟹   ENSRNOP00000070003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7131,789,839 - 131,819,661 (-)Ensembl
Rnor_6.0 Ensembl7142,322,172 - 142,348,232 (-)Ensembl
RefSeq Acc Id: NM_001172063   ⟹   NP_001165534
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87133,668,612 - 133,694,284 (-)NCBI
mRatBN7.27131,789,836 - 131,815,505 (-)NCBI
Rnor_6.07142,322,172 - 142,348,232 (-)NCBI
Rnor_5.07140,126,996 - 140,169,063 (-)NCBI
Celera7128,266,012 - 128,291,542 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006242295   ⟹   XP_006242357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87133,668,612 - 133,706,790 (-)NCBI
mRatBN7.27131,789,836 - 131,828,077 (-)NCBI
Rnor_6.07142,323,626 - 142,361,912 (-)NCBI
Rnor_5.07140,126,996 - 140,169,063 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006242296   ⟹   XP_006242358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87133,668,612 - 133,706,790 (-)NCBI
mRatBN7.27131,789,836 - 131,828,077 (-)NCBI
Rnor_6.07142,323,626 - 142,361,912 (-)NCBI
Rnor_5.07140,126,996 - 140,169,063 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765651   ⟹   XP_008763873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87133,668,612 - 133,706,790 (-)NCBI
mRatBN7.27131,789,836 - 131,828,077 (-)NCBI
Rnor_6.07142,323,626 - 142,361,912 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039078233   ⟹   XP_038934161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87133,668,612 - 133,706,790 (-)NCBI
mRatBN7.27131,789,836 - 131,828,077 (-)NCBI
RefSeq Acc Id: XM_063262835   ⟹   XP_063118905
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87133,668,612 - 133,715,909 (-)NCBI
RefSeq Acc Id: XM_063262836   ⟹   XP_063118906
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87133,673,820 - 133,706,835 (-)NCBI
RefSeq Acc Id: NP_001165534   ⟸   NM_001172063
- UniProtKB: D4A864 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242357   ⟸   XM_006242295
- Peptide Label: isoform X1
- UniProtKB: D4A864 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242358   ⟸   XM_006242296
- Peptide Label: isoform X1
- UniProtKB: D4A864 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763873   ⟸   XM_008765651
- Peptide Label: isoform X1
- UniProtKB: D4A864 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000042281   ⟸   ENSRNOT00000048488
Ensembl Acc Id: ENSRNOP00000070003   ⟸   ENSRNOT00000078848
RefSeq Acc Id: XP_038934161   ⟸   XM_039078233
- Peptide Label: isoform X1
- UniProtKB: D4A864 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118905   ⟸   XM_063262835
- Peptide Label: isoform X1
- UniProtKB: D4A864 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118906   ⟸   XM_063262836
- Peptide Label: isoform X2
Protein Domains
Ricin B lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A864-F1-model_v2 AlphaFold D4A864 1-622 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2319726 AgrOrtholog
BioCyc Gene G2FUF-32010 BioCyc
BioCyc Pathway PWY-7433 [mucin core 1 and core 2 O-glycosylation] BioCyc
  PWY-7435 [mucin core 3 and core 4 O-glycosylation] BioCyc
BioCyc Pathway Image PWY-7433 BioCyc
  PWY-7435 BioCyc
Ensembl Genes ENSRNOG00000033059 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000078848.2 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
InterPro GalNAc-T UniProtKB/TrEMBL
  Glyco_trans_2 UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
KEGG Report rno:100361647 UniProtKB/TrEMBL
NCBI Gene 100361647 ENTREZGENE
PANTHER N-ACETYLGALACTOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 6 UniProtKB/TrEMBL
Pfam Glycos_transf_2 UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
PhenoGen Galnt6 PhenoGen
PROSITE RICIN_B_LECTIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000033059 RatGTEx
SMART RICIN UniProtKB/TrEMBL
Superfamily-SCOP RicinB_like UniProtKB/TrEMBL
  SSF53448 UniProtKB/TrEMBL
UniProt D4A864 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-21 Galnt6  polypeptide N-acetylgalactosaminyltransferase 6  Galnt6  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-01-03 Galnt6  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)  Galnt6  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-01-03 LOC100361647  polypeptide N-acetylgalactosaminyltransferase 6-like  LOC683264  similar to Polypeptide N-acetylgalactosaminyltransferase 6 (Protein-UDP acetylgalactosaminyltransferase 6) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 6) (Polypeptide GalNAc transferase 6) (GalNAc-T6) (pp-GaNTase 6)  Data merged from RGD:1589219 737654 APPROVED
2012-01-03 Galnt6  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6  LOC100361647  polypeptide N-acetylgalactosaminyltransferase 6-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-05 LOC100361647  polypeptide N-acetylgalactosaminyltransferase 6-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC683264  similar to Polypeptide N-acetylgalactosaminyltransferase 6 (Protein-UDP acetylgalactosaminyltransferase 6) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 6) (Polypeptide GalNAc transferase 6) (GalNAc-T6) (pp-GaNTase 6)      Symbol and Name status set to provisional 70820 PROVISIONAL