Tdrd3 (tudor domain containing 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Tdrd3 (tudor domain containing 3) Heterocephalus glaber
Analyze
Symbol: Tdrd3
Name: tudor domain containing 3
RGD ID: 18925294
Description: ENCODES a protein that exhibits chromatin binding (ortholog); histone H3 reader activity (ortholog); histone H4 reader activity (ortholog); INVOLVED IN chromatin organization (inferred); PARTICIPATES IN histone modification pathway; FOUND IN cytosol (ortholog); DNA topoisomerase III-beta-TDRD3 complex (ortholog); exon-exon junction complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Tudor domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474821,656,003 - 21,815,589 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tdrd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474821,656,003 - 21,815,589 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
TDRD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381360,395,533 - 60,573,879 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1360,396,457 - 60,573,879 (+)Ensemblhg38GRCh38
GRCh371360,970,591 - 61,148,013 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361359,911,823 - 60,046,012 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341359,869,122 - 60,046,012NCBI
Celera1341,929,733 - 42,107,133 (+)NCBICelera
Cytogenetic Map13q21.2NCBI
HuRef1341,662,317 - 41,839,768 (+)NCBIHuRef
CHM1_11360,938,267 - 61,115,685 (+)NCBICHM1_1
T2T-CHM13v2.01359,615,225 - 59,793,547 (+)NCBIT2T-CHM13v2.0
Tdrd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391487,647,598 - 87,782,944 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1487,654,075 - 87,782,940 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381487,416,178 - 87,545,508 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1487,416,639 - 87,545,504 (+)Ensemblmm10GRCm38
MGSCv371487,816,390 - 87,945,315 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361486,248,429 - 86,377,251 (+)NCBIMGSCv36mm8
Celera1484,929,172 - 85,068,169 (+)NCBICelera
Cytogenetic Map14E1NCBI
cM Map1444.17NCBI
Tdrd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81569,748,754 - 69,911,605 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1569,749,217 - 69,884,656 (+)EnsemblGRCr8
mRatBN7.21563,340,531 - 63,497,208 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1563,341,235 - 63,476,110 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1567,449,294 - 67,576,546 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01568,534,799 - 68,662,049 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01565,431,929 - 65,566,762 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01570,732,164 - 70,864,855 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1570,790,125 - 70,859,185 (+)Ensemblrn6Rnor6.0
Rnor_5.01574,335,410 - 74,468,101 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41569,605,244 - 69,739,566 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1562,845,891 - 62,979,450 (+)NCBICelera
RGSC_v3.11569,621,023 - 69,755,345 (+)NCBI
Cytogenetic Map15q12NCBI
Tdrd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540444,328,795 - 44,457,784 (-)Ensembl
ChiLan1.0NW_00495540444,329,159 - 44,457,958 (-)NCBIChiLan1.0ChiLan1.0
TDRD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21461,913,781 - 62,095,454 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11360,505,859 - 60,687,137 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01341,568,080 - 41,750,288 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11360,289,702 - 60,470,245 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1360,290,518 - 60,470,245 (+)EnsemblpanPan2panpan1.1
TDRD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12216,287,721 - 16,449,842 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2216,288,473 - 16,444,635 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2216,265,095 - 16,427,920 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02216,524,378 - 16,687,132 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2216,525,132 - 16,687,126 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12216,224,234 - 16,386,787 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02216,249,914 - 16,412,810 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02216,264,401 - 16,386,815 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tdrd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945135,830,370 - 135,931,283 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493651111,258,898 - 11,348,522 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TDRD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1133,258,063 - 33,440,123 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11133,257,556 - 33,440,131 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21134,988,674 - 35,171,255 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TDRD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1338,174,141 - 38,361,626 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl338,174,990 - 38,361,622 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660575,331,867 - 5,524,367 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tdrd3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11237,070,424 - 37,191,143 (-)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004844279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004844280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021257928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021257929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021257930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021257931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021257932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01028276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01028283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH169548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_004844279   ⟹   XP_004844336
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474821,656,006 - 21,815,589 (+)NCBI
RefSeq Acc Id: XM_004844280   ⟹   XP_004844337
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474821,656,757 - 21,815,589 (+)NCBI
RefSeq Acc Id: XM_021257928   ⟹   XP_021113587
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474821,708,783 - 21,815,589 (+)NCBI
RefSeq Acc Id: XM_021257929   ⟹   XP_021113588
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474821,656,003 - 21,785,425 (+)NCBI
RefSeq Acc Id: XM_021257930   ⟹   XP_021113589
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474821,709,341 - 21,815,589 (+)NCBI
RefSeq Acc Id: XM_021257931   ⟹   XP_021113590
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474821,729,233 - 21,815,589 (+)NCBI
RefSeq Acc Id: XM_021257932   ⟹   XP_021113591
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474821,656,765 - 21,815,589 (+)NCBI
RefSeq Acc Id: XP_021113588   ⟸   XM_021257929
- Peptide Label: isoform X3
- UniProtKB: A0AAX6SZ87 (UniProtKB/TrEMBL),   G5BCM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004844336   ⟸   XM_004844279
- Peptide Label: isoform X1
- UniProtKB: A0AAX6P653 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004844337   ⟸   XM_004844280
- Peptide Label: isoform X4
- UniProtKB: A0AAX6P5I9 (UniProtKB/TrEMBL),   G5BCM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113591   ⟸   XM_021257932
- Peptide Label: isoform X4
- UniProtKB: A0AAX6P5I9 (UniProtKB/TrEMBL),   G5BCM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113587   ⟸   XM_021257928
- Peptide Label: isoform X2
- UniProtKB: A0AAX6T0L3 (UniProtKB/TrEMBL),   G5BCM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113589   ⟸   XM_021257930
- Peptide Label: isoform X4
- UniProtKB: A0AAX6P5I9 (UniProtKB/TrEMBL),   G5BCM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113590   ⟸   XM_021257931
- Peptide Label: isoform X5
- UniProtKB: A0AAX6T0V2 (UniProtKB/TrEMBL),   G5BCM9 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018707 ENTREZGENE
Ensembl Transcript ENSHGLT00000026521 ENTREZGENE
Gene3D-CATH 2.30.30.140 UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
  RecQ-mediated genome instability protein Rmi1, C-terminal domain UniProtKB/TrEMBL
InterPro RMI1_N UniProtKB/TrEMBL
  RMI1_N_C_sf UniProtKB/TrEMBL
  Tudor UniProtKB/TrEMBL
  Tudor_TDRD3 UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/TrEMBL
  UBA_TDRD3 UniProtKB/TrEMBL
KEGG Report hgl:101713672 UniProtKB/TrEMBL
NCBI Gene Tdrd3 ENTREZGENE
PANTHER SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED UniProtKB/TrEMBL
  TUDOR DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
Pfam RMI1_N UniProtKB/TrEMBL
  TUDOR UniProtKB/TrEMBL
  UBA_7 UniProtKB/TrEMBL
PROSITE TUDOR UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
SMART DUF1767 UniProtKB/TrEMBL
  TUDOR UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
Superfamily-SCOP Tudor/PWWP/MBT UniProtKB/TrEMBL
  UBA-like UniProtKB/TrEMBL
UniProt A0AAX6P5I9 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6P653 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SZ87 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T0L3 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T0V2 ENTREZGENE, UniProtKB/TrEMBL
  G5BCM9 ENTREZGENE, UniProtKB/TrEMBL