Ect2l (epithelial cell transforming 2 like) - Rat Genome Database

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Gene: Ect2l (epithelial cell transforming 2 like) Heterocephalus glaber
Analyze
Symbol: Ect2l
Name: epithelial cell transforming 2 like
RGD ID: 18913706
Description: ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: epithelial cell transforming sequence 2 oncogene-like; epithelial cell-transforming sequence 2 oncogene-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475315,059,107 - 15,150,617 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475315,058,307 - 15,153,975 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ect2l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475315,059,107 - 15,150,617 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475315,058,307 - 15,153,975 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
ECT2L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386138,796,087 - 138,904,070 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6138,795,911 - 138,904,070 (+)Ensemblhg38GRCh38
GRCh376139,117,224 - 139,225,207 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366139,176,002 - 139,266,900 (+)NCBIBuild 36Build 36hg18NCBI36
Celera6139,857,349 - 139,965,590 (+)NCBICelera
Cytogenetic Map6q24.1NCBI
HuRef6136,678,549 - 136,786,853 (+)NCBIHuRef
CHM1_16139,380,248 - 139,488,189 (+)NCBICHM1_1
T2T-CHM13v2.06139,984,635 - 140,092,615 (+)NCBIT2T-CHM13v2.0
Ect2l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391018,004,123 - 18,086,575 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1018,004,651 - 18,086,638 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381018,128,375 - 18,210,827 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1018,128,903 - 18,210,890 (-)Ensemblmm10GRCm38
MGSCv371017,848,828 - 17,921,159 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361017,848,828 - 17,921,159 (-)NCBIMGSCv36mm8
Celera1018,027,165 - 18,098,726 (-)NCBICelera
Cytogenetic Map10A3NCBI
cM Map107.47NCBI
Ect2l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8114,594,726 - 14,677,321 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl114,596,588 - 14,675,219 (-)EnsemblGRCr8
mRatBN7.2112,775,705 - 12,857,538 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl112,778,922 - 12,855,449 (-)EnsemblmRatBN7.2
Rnor_6.0113,301,918 - 13,372,928 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl113,302,256 - 13,341,952 (-)Ensemblrn6Rnor6.0
Celera111,234,398 - 11,301,711 (-)NCBICelera
Cytogenetic Map1p12NCBI
Ect2l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543620,754,934 - 20,843,015 (-)Ensembl
ChiLan1.0NW_00495543620,754,395 - 20,843,015 (-)NCBIChiLan1.0ChiLan1.0
ECT2L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25158,762,241 - 158,868,220 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16156,659,827 - 156,766,511 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06136,556,048 - 136,662,697 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16140,641,624 - 140,747,937 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6140,641,624 - 140,748,058 (+)EnsemblpanPan2panpan1.1
ECT2L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1131,069,668 - 31,140,358 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl131,069,732 - 31,139,325 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha131,937,114 - 32,015,831 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0131,223,419 - 31,303,208 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl131,232,949 - 31,300,641 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1131,110,418 - 31,179,588 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0130,982,991 - 31,061,831 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0131,292,668 - 31,372,882 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ect2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946126,111,158 - 126,199,922 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365605,906,220 - 5,978,849 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365605,906,173 - 5,979,080 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ECT2L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,566,954 - 25,644,277 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1125,566,955 - 25,644,289 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2128,702,374 - 28,779,562 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ECT2L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11334,489,321 - 34,594,872 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1334,491,222 - 34,576,744 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660406,660,068 - 6,768,969 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ect2l
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12218,689,269 - 218,761,615 (+)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021259336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021259337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021259338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021259339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021259340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021259341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021259342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021259343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021259344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021259345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021259346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021259347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002395475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002395476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01033962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01033965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000023438   ⟹   ENSHGLP00000023222
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475315,059,107 - 15,150,617 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000023439   ⟹   ENSHGLP00000023223
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475315,059,432 - 15,139,404 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000023440   ⟹   ENSHGLP00000023224
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475315,059,432 - 15,139,404 (-)Ensembl
RefSeq Acc Id: XM_021259336   ⟹   XP_021114995
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,069,014 - 15,153,705 (-)NCBI
RefSeq Acc Id: XM_021259337   ⟹   XP_021114996
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,069,014 - 15,153,705 (-)NCBI
RefSeq Acc Id: XM_021259338   ⟹   XP_021114997
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,069,014 - 15,153,975 (-)NCBI
RefSeq Acc Id: XM_021259339   ⟹   XP_021114998
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,069,014 - 15,153,975 (-)NCBI
RefSeq Acc Id: XM_021259340   ⟹   XP_021114999
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,069,014 - 15,153,975 (-)NCBI
RefSeq Acc Id: XM_021259341   ⟹   XP_021115000
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,069,014 - 15,153,975 (-)NCBI
RefSeq Acc Id: XM_021259342   ⟹   XP_021115001
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,069,014 - 15,153,975 (-)NCBI
RefSeq Acc Id: XM_021259343   ⟹   XP_021115002
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,069,014 - 15,153,975 (-)NCBI
RefSeq Acc Id: XM_021259344   ⟹   XP_021115003
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,069,016 - 15,153,705 (-)NCBI
RefSeq Acc Id: XM_021259345   ⟹   XP_021115004
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,058,307 - 15,153,705 (-)NCBI
RefSeq Acc Id: XM_021259346   ⟹   XP_021115005
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,058,307 - 15,153,705 (-)NCBI
RefSeq Acc Id: XM_021259347   ⟹   XP_021115006
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,058,307 - 15,153,705 (-)NCBI
RefSeq Acc Id: XR_002395475
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,061,642 - 15,153,705 (-)NCBI
RefSeq Acc Id: XR_002395476
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,070,150 - 15,153,705 (-)NCBI
RefSeq Acc Id: XP_021115006   ⟸   XM_021259347
- Peptide Label: isoform X5
- UniProtKB: A0AAX6SYX1 (UniProtKB/TrEMBL),   G5AUD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115005   ⟸   XM_021259346
- Peptide Label: isoform X4
- UniProtKB: A0AAX6T0K0 (UniProtKB/TrEMBL),   G5AUD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115004   ⟸   XM_021259345
- Peptide Label: isoform X3
- UniProtKB: A0AAX6T2Y9 (UniProtKB/TrEMBL),   G5AUD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115002   ⟸   XM_021259343
- Peptide Label: isoform X1
- UniProtKB: A0AAX6T4W5 (UniProtKB/TrEMBL),   G5AUD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115001   ⟸   XM_021259342
- Peptide Label: isoform X1
- UniProtKB: A0AAX6T4W5 (UniProtKB/TrEMBL),   G5AUD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115000   ⟸   XM_021259341
- Peptide Label: isoform X1
- UniProtKB: A0AAX6T4W5 (UniProtKB/TrEMBL),   G5AUD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114999   ⟸   XM_021259340
- Peptide Label: isoform X1
- UniProtKB: A0AAX6T4W5 (UniProtKB/TrEMBL),   G5AUD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114998   ⟸   XM_021259339
- Peptide Label: isoform X1
- UniProtKB: A0AAX6T4W5 (UniProtKB/TrEMBL),   G5AUD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114997   ⟸   XM_021259338
- Peptide Label: isoform X1
- UniProtKB: A0AAX6T4W5 (UniProtKB/TrEMBL),   G5AUD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114996   ⟸   XM_021259337
- Peptide Label: isoform X1
- UniProtKB: A0AAX6T4W5 (UniProtKB/TrEMBL),   G5AUD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114995   ⟸   XM_021259336
- Peptide Label: isoform X1
- UniProtKB: A0AAX6T4W5 (UniProtKB/TrEMBL),   G5AUD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115003   ⟸   XM_021259344
- Peptide Label: isoform X2
- UniProtKB: A0AAX6T4S2 (UniProtKB/TrEMBL),   G5AUD3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000023224   ⟸   ENSHGLT00000023440
Ensembl Acc Id: ENSHGLP00000023222   ⟸   ENSHGLT00000023438
Ensembl Acc Id: ENSHGLP00000023223   ⟸   ENSHGLT00000023439


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016556 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000023438 ENTREZGENE
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
  Dbl homology (DH) domain UniProtKB/TrEMBL
  Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) UniProtKB/TrEMBL
InterPro DBL_dom_sf UniProtKB/TrEMBL
  DH-domain UniProtKB/TrEMBL
  DUF4347 UniProtKB/TrEMBL
  F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  GEF_Ubiquitin-Prot_Reg UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
KEGG Report hgl:101702737 UniProtKB/TrEMBL
NCBI Gene Ect2l ENTREZGENE
PANTHER EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE UniProtKB/TrEMBL
  EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE UniProtKB/TrEMBL
Pfam DUF4347 UniProtKB/TrEMBL
  F-box-like UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
PROSITE DH_2 UniProtKB/TrEMBL
SMART RhoGEF UniProtKB/TrEMBL
Superfamily-SCOP DBL homology domain (DH-domain) UniProtKB/TrEMBL
  F-box domain UniProtKB/TrEMBL
  PH domain-like UniProtKB/TrEMBL
UniProt A0AAX6SYX1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T0K0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T2Y9 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T4S2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T4W5 ENTREZGENE, UniProtKB/TrEMBL
  G5AUD3 ENTREZGENE, UniProtKB/TrEMBL