Ap1g1 (adaptor related protein complex 1 subunit gamma 1) - Rat Genome Database

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Gene: Ap1g1 (adaptor related protein complex 1 subunit gamma 1) Heterocephalus glaber
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Symbol: Ap1g1
Name: adaptor related protein complex 1 subunit gamma 1
RGD ID: 18902643
Description: ENCODES a protein that exhibits collagen binding (ortholog); GTP-dependent protein binding (ortholog); kinesin binding (ortholog); INVOLVED IN endosome to melanosome transport (ortholog); Golgi to lysosome transport (ortholog); positive regulation of natural killer cell degranulation (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); USMANI-RIAZUDDIN SYNDROME, AUTOSOMAL DOMINANT (ortholog); FOUND IN clathrin-coated vesicle (ortholog); cytosol (ortholog); presynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adaptor related protein complex 1 gamma 1 subunit; AP-1 complex subunit gamma-1; CD63 antigen pseudogene
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474613,997,681 - 14,081,197 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474613,997,903 - 14,081,140 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ap1g1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474613,997,681 - 14,081,197 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474613,997,903 - 14,081,140 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
AP1G1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381671,729,000 - 71,808,834 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1671,729,000 - 71,809,201 (-)Ensemblhg38GRCh38
GRCh371671,762,903 - 71,842,737 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361670,320,404 - 70,400,477 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341670,320,415 - 70,400,477NCBI
Celera1656,079,081 - 56,139,681 (-)NCBICelera
Cytogenetic Map16q22.2NCBI
HuRef1657,530,455 - 57,610,654 (-)NCBIHuRef
CHM1_11673,175,717 - 73,255,849 (-)NCBICHM1_1
T2T-CHM13v2.01677,546,146 - 77,626,032 (-)NCBIT2T-CHM13v2.0
Ap1g1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398110,505,215 - 110,590,842 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8110,505,186 - 110,590,836 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm388109,778,583 - 109,864,210 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8109,778,554 - 109,864,204 (+)Ensemblmm10GRCm38
MGSCv378112,302,540 - 112,384,835 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368112,667,839 - 112,750,487 (+)NCBIMGSCv36mm8
Celera8114,004,323 - 114,082,583 (+)NCBICelera
Cytogenetic Map8D3NCBI
cM Map857.26NCBI
Ap1g1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81954,654,101 - 54,740,586 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1954,620,807 - 54,740,586 (+)EnsemblGRCr8
mRatBN7.21937,744,633 - 37,831,134 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1937,744,633 - 37,829,167 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1944,557,067 - 44,643,433 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01945,210,401 - 45,296,775 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01947,520,023 - 47,606,391 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1948,438,572 - 48,524,941 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1946,562,051 - 46,648,418 (+)NCBILyon_Normotensive
Lyon_Hypertensive1948,436,771 - 48,523,140 (+)NCBILyon_Hypertensive
F344_StmMcwi1946,185,472 - 46,271,783 (+)NCBIF344_StmMcwi
Rnor_6.01941,805,252 - 41,860,076 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01952,628,652 - 52,684,797 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41939,676,021 - 39,734,854 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1937,174,653 - 37,231,881 (+)NCBICelera
RGSC_v3.11939,730,027 - 39,738,578 (+)NCBI
Cytogenetic Map19q12NCBI
Ap1g1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554844,430,461 - 4,510,497 (-)Ensembl
ChiLan1.0NW_0049554844,430,461 - 4,511,368 (-)NCBIChiLan1.0ChiLan1.0
AP1G1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21882,349,579 - 82,430,963 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11688,278,156 - 88,356,757 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01653,201,859 - 53,282,437 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11671,568,856 - 71,648,744 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1671,568,863 - 71,648,744 (-)EnsemblpanPan2panpan1.1
AP1G1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1577,512,865 - 77,589,136 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl577,432,517 - 77,565,801 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha577,471,192 - 77,550,461 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0577,949,221 - 78,028,610 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl577,869,730 - 78,028,575 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1577,769,242 - 77,848,763 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0577,592,241 - 77,671,470 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0578,091,430 - 78,170,707 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ap1g1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934937,525,971 - 37,605,861 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647521,983,248 - 22,063,181 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647521,983,248 - 22,063,133 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AP1G1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl614,719,959 - 14,809,491 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1614,719,949 - 14,809,821 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2614,338,265 - 14,426,133 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AP1G1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1554,850,831 - 54,944,915 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl554,850,694 - 54,944,900 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604717,652,522 - 17,740,544 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ap1g1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11729,489,003 - 29,575,367 (+)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000021090   ⟹   ENSHGLP00000020887
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474613,997,681 - 14,080,849 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000021091   ⟹   ENSHGLP00000020888
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474613,997,903 - 14,081,197 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000021092   ⟹   ENSHGLP00000020889
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474614,001,923 - 14,055,847 (-)Ensembl
RefSeq Acc Id: XM_004842905   ⟹   XP_004842962
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474613,997,903 - 14,081,110 (-)NCBI
RefSeq Acc Id: XM_004842906   ⟹   XP_004842963
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474613,997,903 - 14,081,140 (-)NCBI
RefSeq Acc Id: XM_004842907   ⟹   XP_004842964
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474613,997,903 - 14,081,109 (-)NCBI
RefSeq Acc Id: XM_021256738   ⟹   XP_021112397
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474613,997,903 - 14,081,110 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004842962 (Get FASTA)   NCBI Sequence Viewer  
  XP_004842963 (Get FASTA)   NCBI Sequence Viewer  
  XP_004842964 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112397 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000020888
  ENSHGLP00000020889
GenBank Protein JAO00938 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004842963   ⟸   XM_004842906
- Peptide Label: isoform X1
- UniProtKB: A0AAX6P3K1 (UniProtKB/TrEMBL),   G5BNU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112397   ⟸   XM_021256738
- Peptide Label: isoform X3
- UniProtKB: A0AAX6STL8 (UniProtKB/TrEMBL),   G5BNU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004842962   ⟸   XM_004842905
- Peptide Label: isoform X1
- UniProtKB: A0AAX6P3K1 (UniProtKB/TrEMBL),   G5BNU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004842964   ⟸   XM_004842907
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JWP4 (UniProtKB/TrEMBL),   G5BNU1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000020888   ⟸   ENSHGLT00000021091
Ensembl Acc Id: ENSHGLP00000020889   ⟸   ENSHGLT00000021092
Ensembl Acc Id: ENSHGLP00000020887   ⟸   ENSHGLT00000021090


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014932 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000021091 ENTREZGENE
  ENSHGLT00000021092 ENTREZGENE
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
  2.60.40.1230 UniProtKB/TrEMBL
InterPro Adaptor_Complx_Large_Subunit UniProtKB/TrEMBL
  AP1_complex_gsu UniProtKB/TrEMBL
  ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Clathrin/coatomer_adapt-like_N UniProtKB/TrEMBL
  Clathrin_a/b/g-adaptin_app_Ig UniProtKB/TrEMBL
  Clathrin_app_Ig-like_sf UniProtKB/TrEMBL
  GAE_dom UniProtKB/TrEMBL
KEGG Report hgl:101700868 UniProtKB/TrEMBL
NCBI Gene Ap1g1 ENTREZGENE
PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON UniProtKB/TrEMBL
Pfam Adaptin_N UniProtKB/TrEMBL
  Alpha_adaptinC2 UniProtKB/TrEMBL
PIRSF AP1_complex_gamma UniProtKB/TrEMBL
PROSITE GAE UniProtKB/TrEMBL
SMART Alpha_adaptinC2 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  SSF49348 UniProtKB/TrEMBL
UniProt A0A0P6JWP4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6P3K1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6STL8 ENTREZGENE, UniProtKB/TrEMBL
  G5BNU1 ENTREZGENE, UniProtKB/TrEMBL