ZNF236 (zinc finger protein 236) - Rat Genome Database

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Gene: ZNF236 (zinc finger protein 236) Chlorocebus sabaeus
Analyze
Symbol: ZNF236
Name: zinc finger protein 236
RGD ID: 18758752
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN cellular response to glucose stimulus (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1183,002,133 - 3,173,924 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl183,002,252 - 3,126,097 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606022,805,532 - 22,952,853 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF236
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1183,002,133 - 3,173,924 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl183,002,252 - 3,126,097 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606022,805,532 - 22,952,853 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZNF236
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381876,822,557 - 76,972,901 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1876,822,557 - 76,972,901 (+)Ensemblhg38GRCh38
GRCh371874,534,513 - 74,684,857 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361872,665,104 - 72,811,671 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341872,665,103 - 72,811,668NCBI
Celera1871,352,360 - 71,499,717 (+)NCBICelera
Cytogenetic Map18q23NCBI
HuRef1871,217,790 - 71,363,316 (+)NCBIHuRef
CHM1_11874,531,735 - 74,678,392 (+)NCBICHM1_1
T2T-CHM13v2.01877,051,329 - 77,214,701 (+)NCBIT2T-CHM13v2.0
Zfp236
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391882,611,718 - 82,711,044 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1882,611,718 - 82,711,008 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381882,593,593 - 82,692,915 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1882,593,593 - 82,692,883 (-)Ensemblmm10GRCm38
MGSCv371882,762,989 - 82,862,126 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361882,728,021 - 82,827,311 (-)NCBIMGSCv36mm8
Celera1883,663,534 - 83,751,830 (-)NCBICelera
Cytogenetic Map18E3NCBI
cM Map1856.26NCBI
Zfp236
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81878,251,248 - 78,351,037 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1878,251,248 - 78,347,236 (-)EnsemblGRCr8
mRatBN7.21875,976,478 - 76,072,428 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1875,978,231 - 76,073,737 (-)EnsemblmRatBN7.2
Dahl_SR_JrHsd1877,664,119 - 77,760,058 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1877,934,726 - 78,030,728 (-)NCBILyon_Normotensive
Lyon_Hypertensive1878,113,717 - 78,208,322 (-)NCBILyon_Hypertensive
F344_StmMcwi1877,732,957 - 77,827,581 (-)NCBIF344_StmMcwi
Rnor_6.01879,447,384 - 79,543,271 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1879,451,204 - 79,543,219 (-)Ensemblrn6Rnor6.0
Rnor_5.01878,513,516 - 78,608,858 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41879,071,421 - 79,161,867 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1874,610,553 - 74,703,385 (-)NCBICelera
RGSC_v3.11879,144,693 - 79,252,103 (-)NCBI
Cytogenetic Map18q12.3NCBI
Znf236
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540260,185,646 - 60,315,584 (+)Ensembl
ChiLan1.0NW_00495540260,185,687 - 60,315,589 (+)NCBIChiLan1.0ChiLan1.0
ZNF236
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21794,365,724 - 94,523,407 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11880,058,478 - 80,206,386 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01870,213,383 - 70,361,741 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11873,474,631 - 73,620,028 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1873,496,761 - 73,617,956 (+)EnsemblpanPan2panpan1.1
ZNF236
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112,959,113 - 3,062,349 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12,961,498 - 3,061,984 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha13,966,361 - 4,070,399 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.012,765,907 - 2,869,951 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl12,765,933 - 2,870,223 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112,811,205 - 2,915,228 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012,761,628 - 2,865,634 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.012,931,847 - 3,035,890 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Znf236
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494416,841,867 - 16,930,170 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366162,163,063 - 2,243,069 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366162,163,000 - 2,251,306 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF236
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1147,690,556 - 147,782,129 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11147,690,545 - 147,782,162 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21163,273,768 - 163,343,119 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Znf236
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248063,611,795 - 3,731,918 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248063,609,783 - 3,750,471 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Znf236
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11549,630,245 - 49,725,583 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in ZNF236
4007 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000016337   ⟹   ENSCSAP00000014256
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl183,002,252 - 3,126,097 (-)Ensembl
RefSeq Acc Id: XM_037988020   ⟹   XP_037843948
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606022,805,532 - 22,952,853 (+)NCBI
RefSeq Acc Id: XM_037988021   ⟹   XP_037843949
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606022,821,636 - 22,952,853 (+)NCBI
RefSeq Acc Id: XM_037988022   ⟹   XP_037843950
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606022,805,985 - 22,952,853 (+)NCBI
RefSeq Acc Id: XM_037988023   ⟹   XP_037843951
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606022,805,721 - 22,952,715 (+)NCBI
RefSeq Acc Id: XM_037988024   ⟹   XP_037843952
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606022,805,532 - 22,919,454 (+)NCBI
RefSeq Acc Id: XM_037988025   ⟹   XP_037843953
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606022,805,532 - 22,911,107 (+)NCBI
Ensembl Acc Id: ENSCSAP00000014256   ⟸   ENSCSAT00000016337
RefSeq Acc Id: XP_037843948   ⟸   XM_037988020
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S067 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037843952   ⟸   XM_037988024
- Peptide Label: isoform X4
- UniProtKB: A0A0D9S067 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037843953   ⟸   XM_037988025
- Peptide Label: isoform X5
- UniProtKB: A0A0D9S067 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037843951   ⟸   XM_037988023
- Peptide Label: isoform X3
- UniProtKB: A0A0D9S067 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037843950   ⟸   XM_037988022
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S067 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037843949   ⟸   XM_037988021
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S067 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018240 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016337.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Matrin/U1-like-C_Znf_C2H2 UniProtKB/TrEMBL
  Transcr_Reg_ZincFinger UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF236 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 236 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
  ZnF_U1 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A0D9S067 ENTREZGENE, UniProtKB/TrEMBL