ZNF236 (zinc finger protein 236) - Rat Genome Database

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Gene: ZNF236 (zinc finger protein 236) Sus scrofa
Analyze
Symbol: ZNF236
Name: zinc finger protein 236
RGD ID: 13963011
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN cellular response to glucose stimulus (ortholog); ASSOCIATED WITH Burn-McKeown syndrome (ortholog); cerebellar ataxia (ortholog); chromosome 18q deletion syndrome (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1147,690,556 - 147,782,129 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11147,690,545 - 147,782,162 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21163,273,768 - 163,343,119 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
ZNF236
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1147,690,556 - 147,782,129 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11147,690,545 - 147,782,162 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21163,273,768 - 163,343,119 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF236
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381876,822,557 - 76,972,901 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1876,822,557 - 76,972,901 (+)EnsemblGRCh38hg38GRCh38
GRCh371874,534,513 - 74,684,857 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361872,665,104 - 72,811,671 (+)NCBINCBI36Build 36hg18NCBI36
Build 341872,665,103 - 72,811,668NCBI
Celera1871,352,360 - 71,499,717 (+)NCBICelera
Cytogenetic Map18q23NCBI
HuRef1871,217,790 - 71,363,316 (+)NCBIHuRef
CHM1_11874,531,735 - 74,678,392 (+)NCBICHM1_1
T2T-CHM13v2.01877,051,329 - 77,214,701 (+)NCBIT2T-CHM13v2.0
Zfp236
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391882,611,718 - 82,711,044 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1882,611,718 - 82,711,008 (-)EnsemblGRCm39 Ensembl
GRCm381882,593,593 - 82,692,915 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1882,593,593 - 82,692,883 (-)EnsemblGRCm38mm10GRCm38
MGSCv371882,762,989 - 82,862,126 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361882,728,021 - 82,827,311 (-)NCBIMGSCv36mm8
Celera1883,663,534 - 83,751,830 (-)NCBICelera
Cytogenetic Map18E3NCBI
cM Map1856.26NCBI
Zfp236
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81878,251,248 - 78,351,037 (-)NCBIGRCr8
mRatBN7.21875,976,478 - 76,072,428 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1875,978,231 - 76,073,737 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01879,447,384 - 79,543,271 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1879,451,204 - 79,543,219 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01878,513,516 - 78,608,858 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41879,071,421 - 79,161,867 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11879,144,693 - 79,252,103 (-)NCBI
Celera1874,610,553 - 74,703,385 (-)NCBICelera
Cytogenetic Map18q12.3NCBI
Znf236
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540260,185,646 - 60,315,584 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540260,185,687 - 60,315,589 (+)NCBIChiLan1.0ChiLan1.0
ZNF236
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21794,365,724 - 94,523,407 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11880,058,478 - 80,206,386 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01870,213,383 - 70,361,741 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11873,474,631 - 73,620,028 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1873,496,761 - 73,617,956 (+)Ensemblpanpan1.1panPan2
ZNF236
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112,959,113 - 3,062,349 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12,961,498 - 3,061,984 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha13,966,361 - 4,070,399 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.012,765,907 - 2,869,951 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl12,765,933 - 2,870,223 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112,811,205 - 2,915,228 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012,761,628 - 2,865,634 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.012,931,847 - 3,035,890 (-)NCBIUU_Cfam_GSD_1.0
Znf236
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494416,841,867 - 16,930,170 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366162,163,063 - 2,243,069 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366162,163,000 - 2,251,306 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF236
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1183,002,133 - 3,173,924 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl183,002,252 - 3,126,097 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606022,805,532 - 22,952,853 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf236
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248063,611,795 - 3,731,918 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248063,609,783 - 3,750,471 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZNF236
1550 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 4 3 4 2 23 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000023890   ⟹   ENSSSCP00000021050
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1147,690,556 - 147,782,129 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000025136   ⟹   ENSSSCP00000019907
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1147,690,919 - 147,709,614 (-)Ensembl
RefSeq Acc Id: XM_021099032   ⟹   XP_020954691
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11147,690,545 - 147,782,161 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021099035   ⟹   XP_020954694
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11147,690,545 - 147,782,161 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021099040   ⟹   XP_020954699
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11147,693,049 - 147,782,162 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021099045   ⟹   XP_020954704
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11147,690,545 - 147,781,658 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002345821
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11147,690,545 - 147,782,161 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002345824
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11147,690,545 - 147,782,161 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020954694   ⟸   XM_021099035
- Peptide Label: isoform X2
- UniProtKB: A0A8D1MQR8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954691   ⟸   XM_021099032
- Peptide Label: isoform X1
- UniProtKB: A0A4X1U501 (UniProtKB/TrEMBL),   A0A480QGU3 (UniProtKB/TrEMBL),   A0A8D1MQR8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954704   ⟸   XM_021099045
- Peptide Label: isoform X4
- UniProtKB: A0A8D1JBX6 (UniProtKB/TrEMBL),   A0A8D0J8G6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954699   ⟸   XM_021099040
- Peptide Label: isoform X3
- UniProtKB: A0A8D0W230 (UniProtKB/TrEMBL),   A0A8D1JYU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000019907   ⟸   ENSSSCT00000025136
RefSeq Acc Id: ENSSSCP00000021050   ⟸   ENSSSCT00000023890
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000023533 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005025371 UniProtKB/TrEMBL
  ENSSSCG00015048913 UniProtKB/TrEMBL
  ENSSSCG00025025517 UniProtKB/TrEMBL
  ENSSSCG00030023612 UniProtKB/TrEMBL
  ENSSSCG00035063597 UniProtKB/TrEMBL
  ENSSSCG00040009753 UniProtKB/TrEMBL
  ENSSSCG00045037634 UniProtKB/TrEMBL
  ENSSSCG00050046643 UniProtKB/TrEMBL
  ENSSSCG00055007576 UniProtKB/TrEMBL
  ENSSSCG00060006552 UniProtKB/TrEMBL
  ENSSSCG00065069380 UniProtKB/TrEMBL
  ENSSSCG00070013889 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023890 ENTREZGENE
  ENSSSCT00000023890.4 UniProtKB/TrEMBL
  ENSSSCT00000025136.4 UniProtKB/TrEMBL
  ENSSSCT00005040148.1 UniProtKB/TrEMBL
  ENSSSCT00005040188.1 UniProtKB/TrEMBL
  ENSSSCT00005040219.1 UniProtKB/TrEMBL
  ENSSSCT00005040261.1 UniProtKB/TrEMBL
  ENSSSCT00005040299.1 UniProtKB/TrEMBL
  ENSSSCT00005040406.1 UniProtKB/TrEMBL
  ENSSSCT00015065096.1 UniProtKB/TrEMBL
  ENSSSCT00025034469.1 UniProtKB/TrEMBL
  ENSSSCT00025034914.1 UniProtKB/TrEMBL
  ENSSSCT00025035286.1 UniProtKB/TrEMBL
  ENSSSCT00030032799.1 UniProtKB/TrEMBL
  ENSSSCT00030032823.1 UniProtKB/TrEMBL
  ENSSSCT00030032830.1 UniProtKB/TrEMBL
  ENSSSCT00030032883.1 UniProtKB/TrEMBL
  ENSSSCT00030032893.1 UniProtKB/TrEMBL
  ENSSSCT00035085534.1 UniProtKB/TrEMBL
  ENSSSCT00035085548.1 UniProtKB/TrEMBL
  ENSSSCT00035085568.1 UniProtKB/TrEMBL
  ENSSSCT00040012638.1 UniProtKB/TrEMBL
  ENSSSCT00040012715.1 UniProtKB/TrEMBL
  ENSSSCT00040012760.1 UniProtKB/TrEMBL
  ENSSSCT00040012787.1 UniProtKB/TrEMBL
  ENSSSCT00045064992.1 UniProtKB/TrEMBL
  ENSSSCT00045065078.1 UniProtKB/TrEMBL
  ENSSSCT00045065206.1 UniProtKB/TrEMBL
  ENSSSCT00050063479.1 UniProtKB/TrEMBL
  ENSSSCT00050063505.1 UniProtKB/TrEMBL
  ENSSSCT00055014754.1 UniProtKB/TrEMBL
  ENSSSCT00055014907.1 UniProtKB/TrEMBL
  ENSSSCT00055015082.1 UniProtKB/TrEMBL
  ENSSSCT00060008332.1 UniProtKB/TrEMBL
  ENSSSCT00060008337.1 UniProtKB/TrEMBL
  ENSSSCT00060008344.1 UniProtKB/TrEMBL
  ENSSSCT00065095318.1 UniProtKB/TrEMBL
  ENSSSCT00065095342.1 UniProtKB/TrEMBL
  ENSSSCT00065095351.1 UniProtKB/TrEMBL
  ENSSSCT00065095353.1 UniProtKB/TrEMBL
  ENSSSCT00070027504.1 UniProtKB/TrEMBL
  ENSSSCT00070027518.1 UniProtKB/TrEMBL
  ENSSSCT00070027524.1 UniProtKB/TrEMBL
  ENSSSCT00070027529.1 UniProtKB/TrEMBL
  ENSSSCT00070027545.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF236 ENTREZGENE
PANTHER GH09339P-RELATED UniProtKB/TrEMBL
  GM08392P UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 236 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
  zf-met UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A480QGU3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U291_PIG UniProtKB/TrEMBL
  A0A4X1U2A1_PIG UniProtKB/TrEMBL
  A0A4X1U4X7_PIG UniProtKB/TrEMBL
  A0A4X1U501 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U515_PIG UniProtKB/TrEMBL
  A0A8D0J7R3_PIG UniProtKB/TrEMBL
  A0A8D0J8G6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0JBE2_PIG UniProtKB/TrEMBL
  A0A8D0JCT7_PIG UniProtKB/TrEMBL
  A0A8D0JGB6_PIG UniProtKB/TrEMBL
  A0A8D0W1X7_PIG UniProtKB/TrEMBL
  A0A8D0W230 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0W3X3_PIG UniProtKB/TrEMBL
  A0A8D1AY46_PIG UniProtKB/TrEMBL
  A0A8D1C361_PIG UniProtKB/TrEMBL
  A0A8D1DCB1_PIG UniProtKB/TrEMBL
  A0A8D1JBX6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JYU7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JYZ5_PIG UniProtKB/TrEMBL
  A0A8D1MQR8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PUF4_PIG UniProtKB/TrEMBL
  I3L7A3_PIG UniProtKB/TrEMBL
  I3LAI2_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287B8X6 UniProtKB/TrEMBL
VGNC ID VGNC:95209 ENTREZGENE