 Gene-Chemical Interaction Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations |
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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
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 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
 Gviewer (Genome Viewer) unavailable |
 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
 OLGA (Gene List Generator) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Gene Ontology AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | GOA data from the GO Consortium |
| 3. | RGD automated data pipeline |
| 4. | RGD automated import pipeline for gene-chemical interactions |
References - uncurated| PubMed | 9299475 |
Genomics
Comparative Map Data| Zfp236 (Rattus norvegicus - Norway rat) |
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| ZNF236 (Homo sapiens - human) |
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| Zfp236 (Mus musculus - house mouse) |
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| Znf236 (Chinchilla lanigera - long-tailed chinchilla) |
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| ZNF236 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| ZNF236 (Canis lupus familiaris - dog) |
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| Znf236 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| ZNF236 (Sus scrofa - pig) |
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| ZNF236 (Chlorocebus sabaeus - African green monkey) |
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| Znf236 (Heterocephalus glaber - naked mole-rat) |
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Position Markers| D18Chm83 |
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| D18Chm82 |
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| D18Chm81 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 4 | 18 | 2 | 18 | 2 | 1 | 1 | 52 | 27 | 36 | 10 | 1 | |
| Low | 3 | 39 | 39 | 39 | 1 | 39 | 7 | 10 | 22 | 8 | 5 | 1 | 7 |
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | XM_001059668 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006255011 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006255013 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006255016 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008772218 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008772219 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008774154 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008774155 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017587900 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017587901 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017601146 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XR_361554 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XR_598383 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AAHX01096328 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AAHX01096329 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01096330 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01096331 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC097762 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC127118 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH474021 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000022086 ⟹ ENSRNOP00000022086 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_001059668 ⟹ XP_001059668 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
GGCGGCGGCGCGGGCGGCGGCTTCCTCCTCCTCCTCCTCCTGCAGAGTTCCTGTTTGCTCCCTThide sequence |
| RefSeq Acc Id: | XM_006255011 ⟹ XP_006255073 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
CGCCCGCCGGTGCCGCGCGTGCGCGCCCGCCGAGGGAGAGCGCGAGTGAGGGGTGGGCCGCCGChide sequence |
| RefSeq Acc Id: | XM_006255013 ⟹ XP_006255075 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
CGCCCGCCGGTGCCGCGCGTGCGCGCCCGCCGAGGGAGAGCGCGAGTGAGGGGTGGGCCGCCGChide sequence |
| RefSeq Acc Id: | XM_006255016 ⟹ XP_006255078 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
CGCCCGCCGGTGCCGCGCGTGCGCGCCCGCCGAGGGAGAGCGCGAGTGAGGGGTGGGCCGCCGChide sequence |
| RefSeq Acc Id: | XM_008772218 ⟹ XP_008770440 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
TGTGCAGGCAAGCTGGCTGGGAAAGAACCCTGTCTGGGCGTTGGGAAGGCGGTGCCCGTCTGGGhide sequence |
| RefSeq Acc Id: | XM_008772219 ⟹ XP_008770441 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CGCCCGCCGGTGCCGCGCGTGCGCGCCCGCCGAGGGAGAGCGCGAGTGAGGGGTGGGCCGCCGChide sequence |
| RefSeq Acc Id: | XM_008774154 ⟹ XP_008772376 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
GGCGGCGGCGCGGGCGGCGGCTTCCTCCTCCTCCTCCTCCTGCAGAGTTCCTGTTTGCTCCCTThide sequence |
| RefSeq Acc Id: | XM_008774155 ⟹ XP_008772377 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
GGCGGCGGCGCGGGCGGCGGCTTCCTCCTCCTCCTCCTCCTGCAGAGTTCCTGTTTGCTCCCTThide sequence |
| RefSeq Acc Id: | XM_017587900 ⟹ XP_017443389 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CTGGTAGAGCAGTCAGTGCTCTTAACCATGGAGCCATTTCTCCAGGCCCAACACAATCTCTTAThide sequence |
| RefSeq Acc Id: | XM_017587901 ⟹ XP_017443390 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
GGCGGCGGCGCGGGCGGCGGCTTCCTCCTCCTCCTCCTCCTGCAGAGTTCCTGTTTGCTCCCTThide sequence |
| RefSeq Acc Id: | XM_017601146 ⟹ XP_017456635 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CTGGTAGAGCAGTCAGTGCTCTTAACCATGGAGCCATTTCTCCAGGCCCAACACAATCTCTTAThide sequence |
| RefSeq Acc Id: | XR_361554 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | NON-CODING | ||||||||||||
| Position: |
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| Sequence: |
CGCCCGCCGGTGCCGCGCGTGCGCGCCCGCCGAGGGAGAGCGCGAGTGAGGGGTGGGCCGCCGChide sequence |
| RefSeq Acc Id: | XR_598383 | ||||||||
| RefSeq Status: | |||||||||
| Type: | NON-CODING | ||||||||
| Position: |
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| Sequence: |
GGCGGCGGCGCGGGCGGCGGCTTCCTCCTCCTCCTCCTCCTGCAGAGTTCCTGTTTGCTCCCTThide sequence |
Protein Sequences| Protein RefSeqs | XP_001059668 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006255073 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006255075 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006255078 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008770440 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008770441 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008772376 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008772377 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017443389 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017443390 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017456635 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | EDL75205 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | XP_001059668 ⟸ XM_001059668 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MEDGILALNDDDIDDDCPIPNFHKCEICLLSFPKESQFQRHMREHEQNDKPHRCDQCPQTFNVEhide sequence |
| RefSeq Acc Id: | XP_006255075 ⟸ XM_006255013 |
| - Peptide Label: | isoform X5 |
| - Sequence: |
MPRGRPPKPRDGAARGESDGILALNDDDIDDDCPIPNFHKCEICLLSFPKESQFQRHMREHEQNhide sequence |
| RefSeq Acc Id: | XP_006255073 ⟸ XM_006255011 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | F1LXC0 (UniProtKB/TrEMBL) |
| - Sequence: |
MPRGRPPKPRDGAARGESDGILALNDDDIDDDCPIPNFHKCEICLLSFPKESQFQRHMREHEQNhide sequence |
| RefSeq Acc Id: | XP_006255078 ⟸ XM_006255016 |
| - Peptide Label: | isoform X6 |
| - Sequence: |
MPRGRPPKPRDGAARGESDGILALNDDDIDDDCPIPNFHKCEICLLSFPKESQFQRHMREHEQNhide sequence |
| RefSeq Acc Id: | XP_008772376 ⟸ XM_008774154 |
| - Peptide Label: | isoform X8 |
| - Sequence: |
MEDGILALNDDDIDDDCPIPNFHKCEICLLSFPKESQFQRHMREHEQNDKPHRCDQCPQTFNVEhide sequence |
| RefSeq Acc Id: | XP_008772377 ⟸ XM_008774155 |
| - Peptide Label: | isoform X9 |
| - Sequence: |
MEDGILALNDDDIDDDCPIPNFHKCEICLLSFPKESQFQRHMREHEQNDKPHRCDQCPQTFNVEhide sequence |
| RefSeq Acc Id: | XP_008770441 ⟸ XM_008772219 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MPRGRPPKPRDGAARGESDGILALNDDDIDDDCPIPNFHKCEICLLSFPKESQFQRHMREHEQNhide sequence |
| RefSeq Acc Id: | XP_008770440 ⟸ XM_008772218 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MEDGILALNDDDIDDDCPIPNFHKCEICLLSFPKESQFQRHMREHEQNDKPHRCDQCPQTFNVEhide sequence |
| RefSeq Acc Id: | XP_017443390 ⟸ XM_017587901 |
| - Peptide Label: | isoform X7 |
| - Sequence: |
MEDGILALNDDDIDDDCPIPNFHKCEICLLSFPKESQFQRHMREHEQNDKPHRCDQCPQTFNVEhide sequence |
| RefSeq Acc Id: | XP_017443389 ⟸ XM_017587900 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MDGILALNDDDIDDDCPIPNFHKCEICLLSFPKESQFQRHMREHEQNDKPHRCDQCPQTFNVEFhide sequence |
| RefSeq Acc Id: | XP_017456635 ⟸ XM_017601146 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MDGILALNDDDIDDDCPIPNFHKCEICLLSFPKESQFQRHMREHEQNDKPHRCDQCPQTFNVEFhide sequence |
| RefSeq Acc Id: | ENSRNOP00000022086 ⟸ ENSRNOT00000022086 |
Protein Domains
C2H2-type
TranscriptomeStrain Variation
Strain Sequence Variants (Rnor 6.0)
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Damaging VariantsAssembly: Rnor_5.0
| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 18 | 78539830 | 78539831 | G | A | snv | BDIX/NemOda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU) |
Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1309670 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000016303 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000022086 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000022086 | ENTREZGENE, UniProtKB/TrEMBL |
| InterPro | Znf_C2H2/integrase_DNA-bd | UniProtKB/TrEMBL |
| Znf_C2H2_sf | UniProtKB/TrEMBL | |
| NCBI Gene | 291409 | ENTREZGENE |
| Pfam | zf-C2H2 | UniProtKB/TrEMBL |
| PhenoGen | Zfp236 | PhenoGen |
| PROSITE | ZINC_FINGER_C2H2_1 | UniProtKB/TrEMBL |
| ZINC_FINGER_C2H2_2 | UniProtKB/TrEMBL | |
| SMART | ZnF_C2H2 | UniProtKB/TrEMBL |
| Superfamily-SCOP | SSF57667 | UniProtKB/TrEMBL |
| UniProt | F1LXC0 | ENTREZGENE, UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2008-04-30 | Zfp236 | zinc finger protein 236 | Zfp236_predicted | zinc finger protein 236 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
| 2005-01-12 | Zfp236_predicted | zinc finger protein 236 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |
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| More on Zfp236 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1309670 |
| Created: | 2005-01-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-08-20 |
| Status: | ACTIVE |
