ELOF1 (elongation factor 1) - Rat Genome Database

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Gene: ELOF1 (elongation factor 1) Chlorocebus sabaeus
Analyze
Symbol: ELOF1
Name: elongation factor 1
RGD ID: 18703570
Description: ENCODES a protein that exhibits protein-macromolecule adaptor activity (inferred); RNA polymerase II complex binding (inferred); INVOLVED IN transcription elongation by RNA polymerase II (inferred); transcription-coupled nucleotide-excision repair (inferred); FOUND IN chromosome (inferred); nucleus (inferred); transcription elongation factor complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: elongation factor 1 homolog; transcription elongation factor 1 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1610,473,519 - 10,479,856 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl610,474,208 - 10,474,802 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660749,370,430 - 9,376,847 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ELOF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1610,473,519 - 10,479,856 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl610,474,208 - 10,474,802 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660749,370,430 - 9,376,847 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ELOF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381911,553,046 - 11,559,230 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1911,551,147 - 11,559,325 (-)Ensemblhg38GRCh38
GRCh371911,663,861 - 11,670,045 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361911,524,858 - 11,531,051 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1911,558,603 - 11,564,794 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1911,238,440 - 11,244,623 (-)NCBIHuRef
CHM1_11911,663,806 - 11,669,999 (-)NCBICHM1_1
T2T-CHM13v2.01911,680,553 - 11,686,741 (-)NCBIT2T-CHM13v2.0
Elof1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39922,024,282 - 22,028,491 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl922,024,285 - 22,028,468 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38922,112,986 - 22,117,195 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl922,112,989 - 22,117,172 (-)Ensemblmm10GRCm38
MGSCv37921,917,433 - 21,918,613 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36921,863,391 - 21,864,571 (-)NCBIMGSCv36mm8
Celera919,381,963 - 19,383,143 (-)NCBICelera
Cytogenetic Map9A3NCBI
cM Map98.34NCBI
Elof1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,921,338 - 28,926,612 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl828,921,339 - 28,926,228 (-)EnsemblGRCr8
mRatBN7.2820,645,336 - 20,650,888 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,645,336 - 20,650,579 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx824,674,576 - 24,679,348 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,971,717 - 22,976,489 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,874,886 - 20,879,773 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd828,927,218 - 28,932,278 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive831,102,927 - 31,107,987 (-)NCBILyon_Normotensive
Lyon_Hypertensive829,678,378 - 29,683,438 (-)NCBILyon_Hypertensive
F344_StmMcwi821,018,879 - 21,023,939 (-)NCBIF344_StmMcwi
Rnor_6.0823,125,987 - 23,130,980 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl823,125,988 - 23,130,877 (-)Ensemblrn6Rnor6.0
Rnor_5.0823,180,771 - 23,185,940 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4821,225,264 - 21,231,059 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera822,035,422 - 22,040,311 (-)NCBICelera
Cytogenetic Map8q13NCBI
Elof1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554952,403,566 - 2,405,411 (-)Ensembl
ChiLan1.0NW_0049554952,403,566 - 2,406,182 (-)NCBIChiLan1.0ChiLan1.0
ELOF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22016,465,592 - 16,471,908 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11915,464,621 - 15,470,936 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01911,099,049 - 11,105,333 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11911,810,354 - 11,816,628 (-)NCBIPanPan1.1PanPan1.1panPan2
ELOF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,821,968 - 49,828,052 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl141,384,324 - 1,385,366 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2049,693,089 - 49,698,460 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02050,340,256 - 50,345,627 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2050,340,385 - 50,347,362 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12049,550,585 - 49,555,956 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02049,976,731 - 49,982,103 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,219,697 - 50,225,068 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Elof1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,769,034 - 208,772,793 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,581,880 - 1,587,267 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,581,908 - 1,587,225 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELOF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,193,725 - 70,199,837 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1270,192,508 - 70,199,926 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2270,546,986 - 70,553,173 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Elof1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248283,292,939 - 3,296,249 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248283,293,032 - 3,295,617 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Elof1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1818,363,404 - 18,368,199 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in ELOF1
174 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000004767   ⟹   ENSCSAP00000003012
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl610,474,208 - 10,474,802 (-)Ensembl
RefSeq Acc Id: XM_007995331   ⟹   XP_007993522
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1610,474,301 - 10,479,691 (-)NCBI
Vero_WHO_p1.0NW_0236660749,370,634 - 9,376,847 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007995332   ⟹   XP_007993523
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1610,473,519 - 10,476,835 (-)NCBI
Vero_WHO_p1.0NW_0236660749,374,266 - 9,376,847 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007995333   ⟹   XP_007993524
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1610,473,519 - 10,479,856 (-)NCBI
Vero_WHO_p1.0NW_0236660749,370,430 - 9,376,847 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037992069   ⟹   XP_037847997
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660749,374,266 - 9,376,847 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007993522 (Get FASTA)   NCBI Sequence Viewer  
  XP_007993523 (Get FASTA)   NCBI Sequence Viewer  
  XP_007993524 (Get FASTA)   NCBI Sequence Viewer  
  XP_037847997 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003012
  ENSCSAP00000003012.1
RefSeq Acc Id: XP_007993524   ⟸   XM_007995333
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R323 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007993523   ⟸   XM_007995332
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007993522   ⟸   XM_007995331
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R323 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000003012   ⟸   ENSCSAT00000004767
RefSeq Acc Id: XP_037847997   ⟸   XM_037992069
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R323 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006725 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004767.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.25.190 UniProtKB/TrEMBL
InterPro Elf1 UniProtKB/TrEMBL
  T_Elf1_sf UniProtKB/TrEMBL
NCBI Gene ELOF1 ENTREZGENE
PANTHER PTHR20934 UniProtKB/TrEMBL
  TRANSCRIPTION ELONGATION FACTOR 1 HOMOLOG UniProtKB/TrEMBL
Pfam Elf1 UniProtKB/TrEMBL
Superfamily-SCOP Zinc beta-ribbon UniProtKB/TrEMBL
UniProt A0A0D9R323 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-08-24 ELOF1  elongation factor 1  ELOF1  elongation factor 1 homolog  Symbol and/or name change 5135510 APPROVED