Elof1 (elongation factor 1 homolog)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner VCMap Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Elof1 (elongation factor 1 homolog) Rattus norvegicus

Analyze

Symbol:

Elof1

Name:

elongation factor 1 homolog

RGD ID:

1587399

Description:

Predicted to have RNA polymerase II complex binding activity. Predicted to be involved in chromatin-mediated maintenance of transcription and transcription elongation from RNA polymerase II promoter. Predicted to localize to transcription elongation factor complex. Orthologous to human ELOF1 (elongation factor 1 homolog); INTERACTS WITH bisphenol A; fipronil; glafenine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

ELF1 homolog, elongation factor 1; elongation factor 1 homolog (ELF1, S. cerevisiae); elongation factor 1 homolog (S. cerevisiae); LOC315466; LOC691193; RGD1309855; similar to elongation factor 1 homolog (ELF1, S. cerevisiae); similar to RIKEN cDNA 1110011K10; transcription elongation factor 1 homolog

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ELOF1 (elongation factor 1 homolog)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Elof1 (ELF1 homolog, elongation factor 1)	HGNC	Treefam, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Elof1 (elongation factor 1 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ELOF1 (elongation factor 1 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ELOF1 (elongation factor 1 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Elof1 (elongation factor 1 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ELOF1 (elongation factor 1 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	ELOF1 (elongation factor 1 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Elof1 (elongation factor 1 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Elof1 (ELF1 homolog, elongation factor 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	ELOF1 (elongation factor 1 homolog)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	elof1 (ELF1 homolog, elongation factor 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	ELF1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	CG40228	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	CG6244	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	Y54G11A.11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	20,645,336 - 20,650,888 (-)	NCBI
Rnor_6.0 Ensembl	8	23,125,988 - 23,130,877 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	8	23,125,987 - 23,130,980 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	8	23,180,771 - 23,185,940 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	21,225,264 - 21,231,059 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	8	22,035,422 - 22,040,311 (-)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B2 (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

carbon nanotube (ISO)

clofibrate (ISO)

copper atom (ISO)

copper(0) (ISO)

disulfiram (ISO)

fipronil (EXP)

fluoranthene (ISO)

folic acid (ISO)

glafenine (EXP)

menadione (ISO)

methapyrilene (ISO)

paracetamol (ISO)

potassium chromate (ISO)

rac-lactic acid (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triptonide (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin-mediated maintenance of transcription (IBA)

transcription elongation from RNA polymerase II promoter (IBA)

Cellular Component

transcription elongation factor complex (IBA)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II complex binding (IBA)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Elof1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	20,645,336 - 20,650,888 (-)	NCBI
Rnor_6.0 Ensembl	8	23,125,988 - 23,130,877 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	8	23,125,987 - 23,130,980 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	8	23,180,771 - 23,185,940 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	21,225,264 - 21,231,059 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	8	22,035,422 - 22,040,311 (-)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

ELOF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	11,551,147 - 11,559,236 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	11,553,044 - 11,559,230 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	11,663,861 - 11,670,045 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	11,524,858 - 11,531,051 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	19	11,558,603 - 11,564,794 (-)	NCBI
Cytogenetic Map	19	p13.2	NCBI
HuRef	19	11,238,440 - 11,244,623 (-)	NCBI		HuRef
CHM1_1	19	11,663,806 - 11,669,999 (-)	NCBI		CHM1_1

Elof1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	22,024,282 - 22,028,491 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	9	22,024,285 - 22,028,468 (-)	Ensembl
GRCm38	9	22,112,986 - 22,117,195 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	22,112,989 - 22,117,172 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	21,917,433 - 21,918,613 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	21,863,391 - 21,864,571 (-)	NCBI			mm8
Celera	9	19,381,963 - 19,383,143 (-)	NCBI		Celera
Cytogenetic Map	9	A3	NCBI

Elof1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	2,403,566 - 2,405,411 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	2,403,566 - 2,406,182 (-)	NCBI	ChiLan1.0	ChiLan1.0

ELOF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	11,810,354 - 11,816,628 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
Mhudiblu_PPA_v0	19	11,099,049 - 11,105,333 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

ELOF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	49,821,968 - 49,828,052 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	1,384,324 - 1,385,366 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1 Ensembl	20	49,822,077 - 49,827,177 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	49,693,089 - 49,698,460 (+)	NCBI
ROS_Cfam_1.0	20	50,340,256 - 50,345,627 (+)	NCBI
UMICH_Zoey_3.1	20	49,550,585 - 49,555,956 (+)	NCBI
UNSW_CanFamBas_1.0	20	49,976,731 - 49,982,103 (+)	NCBI
UU_Cfam_GSD_1.0	20	50,219,697 - 50,225,068 (+)	NCBI

Elof1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	208,769,034 - 208,772,793 (+)	NCBI
SpeTri2.0	NW_004936659	1,581,908 - 1,587,225 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ELOF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	70,193,725 - 70,199,837 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	70,192,508 - 70,199,926 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	70,546,986 - 70,553,173 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ELOF1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	10,473,519 - 10,479,856 (-)	NCBI
ChlSab1.1 Ensembl	6	10,474,208 - 10,474,802 (-)	Ensembl

Elof1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624828	3,293,032 - 3,295,617 (-)	NCBI

Position Markers

RH127923

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	20,645,477 - 20,645,677 (+)	MAPPER
Rnor_6.0	8	23,126,129 - 23,126,328	NCBI	Rnor6.0
Rnor_5.0	8	23,180,913 - 23,181,112	UniSTS	Rnor5.0
RGSC_v3.4	8	21,225,405 - 21,225,604	UniSTS	RGSC3.4
Celera	8	22,035,563 - 22,035,762	UniSTS
RH 3.4 Map	8	181.2	UniSTS
Cytogenetic Map	8	q13	UniSTS

RH138687

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	20,645,339 - 20,645,560 (+)	MAPPER
Rnor_6.0	8	23,125,991 - 23,126,211	NCBI	Rnor6.0
Rnor_5.0	8	23,180,775 - 23,180,995	UniSTS	Rnor5.0
RGSC_v3.4	8	21,225,267 - 21,225,487	UniSTS	RGSC3.4
Celera	8	22,035,425 - 22,035,645	UniSTS
Cytogenetic Map	8	q13	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9590084	Insglur5	Insulin/glucose ratio QTL 5	18.54	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	8	1	24608226	Rat
2317882	Alcrsp24	Alcohol response QTL 24	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	8	1	25942267	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	2108128	47108128	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	2108128	47108128	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	2108128	47108128	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	2108128	47108128	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	7368076	52368076	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	7368076	52368076	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	7368076	52368076	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	8738677	53738677	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	9531047	119211942	Rat
1354627	Despr14	Despair related QTL 14		0.0056	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	10388439	55388439	Rat
1354595	Despr4	Despair related QTL 4	2.16	0.0036	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	8	10388439	55388439	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10938911	120496129	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	11373267	57541668	Rat
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	11373509	45712344	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	11373509	45712344	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	11448251	56448251	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	11448251	56448251	Rat
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	17666555	62666555	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	20717592	65717592	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	21464919	91140553	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	21813070	100873963	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	85
Count of miRNA genes:	76
Interacting mature miRNAs:	80
Transcripts:	ENSRNOT00000019140
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	35	57	41	19	41	1	4	74	35	41	11	1
Low		8					7	7					7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001126098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000019140 ⟹ ENSRNOP00000019140

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	8	23,125,988 - 23,130,877 (-)	Ensembl

RefSeq Acc Id:

NM_001126098 ⟹ NP_001119570

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	20,645,337 - 20,650,227 (-)	NCBI
Rnor_6.0	8	23,125,988 - 23,130,877 (-)	NCBI
Rnor_5.0	8	23,180,771 - 23,185,940 (-)	NCBI
RGSC_v3.4	8	21,225,264 - 21,231,059 (-)	RGD
Celera	8	22,035,422 - 22,040,311 (-)	RGD

Sequence:

show sequence

AGTAAGTGTAGGGTCTCGCGGGCGGGCGTTGGGCTGGGCGGACCGGCGCTCTTCTCTTTATCGC
CCGCAGGGCATAGAGCCAAGGCCCGGGCATGGCTCTGAGGACGACCGCATGGGGAGCCTGATCC
CTGGACCCCTGTAGGTGGGCGAGCGGGCGGCGCCCCTTCCCGCCGTCCCGGTCGCCTCAGGACA
CCATGGCTTGTTCGCAGGCTGCGGTTTGCCCGTGGATGCTGGGGCCACACAGAAACAGATTCAG
GGAAACTCACTGATTCGTTCAACAAGTAGTTATTAAGTGCATAAGGTTTCATCCCCTCTGCAGT
TATGGGACGAAGGAAGTCTAAACGGAAGCCGCCCCCCAAGAAGAAGATGACAGGCACCTTGGAG
ACTCAGTTTACCTGCCCTTTCTGCAACCACGAGAAGTCTTGTGATGTGAAAATGGACCGTGCTC
GAAACACTGGAGTCATCTCCTGTACCGTGTGCCTAGAGGAATTCCAGACACCCATCACATACCT
GTCAGAACCCGTGGATGTGTACAGCGACTGGATAGACGCCTGCGAGGCAGCCAATCAGTAGCGA
TGTCACGGACCTGCTCCCCCGAAGCCCCCACTCTGGCTACTGATCCAGAGACATTCCTGGGCTC
CAGGGTGTAGGTCCAGCGCCGGGCCAGCCCTCCCTCTGTGTGTGTGGAGTGGTGTGAATGAGTA
TCTGCACACGTGGCTGCAGATGTGACTGCAGGGGTGGAGAAGAGTGATTGCTGTGTCTCACCAT
GCAGTCCAGGATTCCTCACAGAACCCTATGCCTCAAGTGACTGAAAGCCTTCGAGTGCTCCCTT
CTCCAGCCCACTGTCTTCTCCGGTGACGGTCCCTGACATCCCAAGCCGGGAATAGCTGTAGGAC
CTCCAATCACCTCAGCCACCTCACCAGCACCTTGCCCTTGAGGAACTGGACTTTCTCTCCTTCC
CAGCCTCCTAGTGCTTGTGGTCTACTCAGGTCCCTTGACTGGGATTTGCTGGGGCACACCATTT
TTCTTGTTTGCCTTTGTAGAAAAGGTGTAGGGGCTTATTTGGAATACAGCTGTCCCTCATGAGC
CTGTCAATAAAGCAGCCAGTGTGT

hide sequence

RefSeq Acc Id:

XM_008765987 ⟹ XP_008764209

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	20,645,336 - 20,650,362 (-)	NCBI
Rnor_6.0	8	23,125,987 - 23,130,980 (-)	NCBI

Sequence:

show sequence

GGAGTGGGCGGGAAACACAAAGCGATATTTCCGCTTCCTTTAAGGGCCGGAAGTTAGCGTCTCC
TGGGTGAAGCAGCCTTGGCTGAGAGGCAGGGCTGGTACAAGTTTCATCCCCTCTGCAGTTATGG
GACGAAGGAAGTCTAAACGGAAGCCGCCCCCCAAGAAGAAGATGACAGGCACCTTGGAGACTCA
GTTTACCTGCCCTTTCTGCAACCACGAGAAGTCTTGTGATGTGAAAATGGACCGTGCTCGAAAC
ACTGGAGTCATCTCCTGTACCGTGTGCCTAGAGGAATTCCAGACACCCATCACATACCTGTCAG
AACCCGTGGATGTGTACAGCGACTGGATAGACGCCTGCGAGGCAGCCAATCAGTAGCGATGTCA
CGGACCTGCTCCCCCGAAGCCCCCACTCTGGCTACTGATCCAGAGACATTCCTGGGCTCCAGGG
TGTAGGTCCAGCGCCGGGCCAGCCCTCCCTCTGTGTGTGTGGAGTGGTGTGAATGAGTATCTGC
ACACGTGGCTGCAGATGTGACTGCAGGGGTGGAGAAGAGTGATTGCTGTGTCTCACCATGCAGT
CCAGGATTCCTCACAGAACCCTATGCCTCAAGTGACTGAAAGCCTTCGAGTGCTCCCTTCTCCA
GCCCACTGTCTTCTCCGGTGACGGTCCCTGACATCCCAAGCCGGGAATAGCTGTAGGACCTCCA
ATCACCTCAGCCACCTCACCAGCACCTTGCCCTTGAGGAACTGGACTTTCTCTCCTTCCCAGCC
TCCTAGTGCTTGTGGTCTACTCAGGTCCCTTGACTGGGATTTGCTGGGGCACACCATTTTTCTT
GTTTGCCTTTGTAGAAAAGGTGTAGGGGCTTATTTGGAATACAGCTGTCCCTCATGAGCCTGTC
AATAAAGCAGCCAGTGTGTA

hide sequence

RefSeq Acc Id:

XM_008765988 ⟹ XP_008764210

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	20,645,336 - 20,650,220 (-)	NCBI
Rnor_6.0	8	23,125,987 - 23,130,860 (-)	NCBI

Sequence:

show sequence

GCGGGCGGGCGTTGGGCTGGGCGGACCGGCGCTCTTCTCTTTATCGCCCGCAGGGCATAGAGCC
AAGGCCCGGGCATGGCTCTGAGGACGACCGCATGGGGAGCCTGATCCCTGGACCCCTGTAGGTT
TCATCCCCTCTGCAGTTATGGGACGAAGGAAGTCTAAACGGAAGCCGCCCCCCAAGAAGAAGAT
GACAGGCACCTTGGAGACTCAGTTTACCTGCCCTTTCTGCAACCACGAGAAGTCTTGTGATGTG
AAAATGGACCGTGCTCGAAACACTGGAGTCATCTCCTGTACCGTGTGCCTAGAGGAATTCCAGA
CACCCATCACATACCTGTCAGAACCCGTGGATGTGTACAGCGACTGGATAGACGCCTGCGAGGC
AGCCAATCAGTAGCGATGTCACGGACCTGCTCCCCCGAAGCCCCCACTCTGGCTACTGATCCAG
AGACATTCCTGGGCTCCAGGGTGTAGGTCCAGCGCCGGGCCAGCCCTCCCTCTGTGTGTGTGGA
GTGGTGTGAATGAGTATCTGCACACGTGGCTGCAGATGTGACTGCAGGGGTGGAGAAGAGTGAT
TGCTGTGTCTCACCATGCAGTCCAGGATTCCTCACAGAACCCTATGCCTCAAGTGACTGAAAGC
CTTCGAGTGCTCCCTTCTCCAGCCCACTGTCTTCTCCGGTGACGGTCCCTGACATCCCAAGCCG
GGAATAGCTGTAGGACCTCCAATCACCTCAGCCACCTCACCAGCACCTTGCCCTTGAGGAACTG
GACTTTCTCTCCTTCCCAGCCTCCTAGTGCTTGTGGTCTACTCAGGTCCCTTGACTGGGATTTG
CTGGGGCACACCATTTTTCTTGTTTGCCTTTGTAGAAAAGGTGTAGGGGCTTATTTGGAATACA
GCTGTCCCTCATGAGCCTGTCAATAAAGCAGCCAGTGTGTA

hide sequence

RefSeq Acc Id:

XM_008765989 ⟹ XP_008764211

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	20,645,336 - 20,650,220 (-)	NCBI
Rnor_6.0	8	23,125,987 - 23,130,860 (-)	NCBI

Sequence:

show sequence

GCGGGCGGGCGTTGGGCTGGGCGGACCGGCGCTCTTCTCTTTATCGCCCGCAGGGCATAGAGCC
AAGGCCCGGGCATGGCTCTGAGGACGACCGCATGGGGAGCCTGATCCCTGGACCCCTGTTTCAT
CCCCTCTGCAGTTATGGGACGAAGGAAGTCTAAACGGAAGCCGCCCCCCAAGAAGAAGATGACA
GGCACCTTGGAGACTCAGTTTACCTGCCCTTTCTGCAACCACGAGAAGTCTTGTGATGTGAAAA
TGGACCGTGCTCGAAACACTGGAGTCATCTCCTGTACCGTGTGCCTAGAGGAATTCCAGACACC
CATCACATACCTGTCAGAACCCGTGGATGTGTACAGCGACTGGATAGACGCCTGCGAGGCAGCC
AATCAGTAGCGATGTCACGGACCTGCTCCCCCGAAGCCCCCACTCTGGCTACTGATCCAGAGAC
ATTCCTGGGCTCCAGGGTGTAGGTCCAGCGCCGGGCCAGCCCTCCCTCTGTGTGTGTGGAGTGG
TGTGAATGAGTATCTGCACACGTGGCTGCAGATGTGACTGCAGGGGTGGAGAAGAGTGATTGCT
GTGTCTCACCATGCAGTCCAGGATTCCTCACAGAACCCTATGCCTCAAGTGACTGAAAGCCTTC
GAGTGCTCCCTTCTCCAGCCCACTGTCTTCTCCGGTGACGGTCCCTGACATCCCAAGCCGGGAA
TAGCTGTAGGACCTCCAATCACCTCAGCCACCTCACCAGCACCTTGCCCTTGAGGAACTGGACT
TTCTCTCCTTCCCAGCCTCCTAGTGCTTGTGGTCTACTCAGGTCCCTTGACTGGGATTTGCTGG
GGCACACCATTTTTCTTGTTTGCCTTTGTAGAAAAGGTGTAGGGGCTTATTTGGAATACAGCTG
TCCCTCATGAGCCTGTCAATAAAGCAGCCAGTGTGTA

hide sequence

RefSeq Acc Id:

XM_039082187 ⟹ XP_038938115

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	20,645,336 - 20,650,383 (-)	NCBI

RefSeq Acc Id:

XM_039082188 ⟹ XP_038938116

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	20,645,336 - 20,649,254 (-)	NCBI

RefSeq Acc Id:

XM_039082189 ⟹ XP_038938117

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	20,645,336 - 20,650,888 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001119570	(Get FASTA)	NCBI Sequence Viewer
	XP_008764209	(Get FASTA)	NCBI Sequence Viewer
	XP_008764210	(Get FASTA)	NCBI Sequence Viewer
	XP_008764211	(Get FASTA)	NCBI Sequence Viewer
	XP_038938115	(Get FASTA)	NCBI Sequence Viewer
	XP_038938116	(Get FASTA)	NCBI Sequence Viewer
	XP_038938117	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL78226	(Get FASTA)	NCBI Sequence Viewer
	EDL78227	(Get FASTA)	NCBI Sequence Viewer
	EDL78228	(Get FASTA)	NCBI Sequence Viewer
	EDL78229	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001119570 ⟸ NM_001126098
- UniProtKB:	D4AEE9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYL SEPVDVYSDWIDACEAANQ hide sequence

RefSeq Acc Id:	XP_008764209 ⟸ XM_008765987
- Peptide Label:	isoform X1
- UniProtKB:	D4AEE9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYL SEPVDVYSDWIDACEAANQ hide sequence

RefSeq Acc Id:	XP_008764211 ⟸ XM_008765989
- Peptide Label:	isoform X1
- UniProtKB:	D4AEE9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYL SEPVDVYSDWIDACEAANQ hide sequence

RefSeq Acc Id:	XP_008764210 ⟸ XM_008765988
- Peptide Label:	isoform X1
- UniProtKB:	D4AEE9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYL SEPVDVYSDWIDACEAANQ hide sequence

RefSeq Acc Id:

ENSRNOP00000019140 ⟸ ENSRNOT00000019140

RefSeq Acc Id:	XP_038938117 ⟸ XM_039082189
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038938115 ⟸ XM_039082187
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038938116 ⟸ XM_039082188
- Peptide Label:	isoform X1

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695806

Promoter ID:

EPDNEW_R6329

Type:

multiple initiation site

Name:

Elof1_1

Description:

elongation factor 1 homolog

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	23,130,925 - 23,130,985	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1587399	AgrOrtholog
Ensembl Genes	ENSRNOG00000014284	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000019140	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000019140	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	2.20.25.190	UniProtKB/TrEMBL
InterPro	DUF701_Zn-bd	UniProtKB/TrEMBL
	T_Elf1_sf	UniProtKB/TrEMBL
KEGG Report	rno:691193	UniProtKB/TrEMBL
NCBI Gene	691193	ENTREZGENE
PANTHER	DUF701_Zn_bd	UniProtKB/TrEMBL
Pfam	Elf1	UniProtKB/TrEMBL
PhenoGen	Elof1	PhenoGen
UniProt	D4AEE9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Elof1	elongation factor 1 homolog	Elof1	ELF1 homolog, elongation factor 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-09	Elof1	ELF1 homolog, elongation factor 1	Elof1	elongation factor 1 homolog (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-06-15	Elof1	elongation factor 1 homolog (S. cerevisiae)	Elof1_predicted	elongation factor 1 homolog (ELF1, S. cerevisiae) (predicted)	Data Merged	1643240	APPROVED
2008-03-06	Elof1	elongation factor 1 homolog (S. cerevisiae)	LOC691193	similar to elongation factor 1 homolog (ELF1, S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC691193	similar to elongation factor 1 homolog (ELF1, S. cerevisiae)	LOC686668	similar to elongation factor 1 homolog (ELF1, S. cerevisiae)	Data Merged	1643240	APPROVED
2006-11-20	LOC686668	similar to elongation factor 1 homolog (ELF1, S. cerevisiae)			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC691193	similar to elongation factor 1 homolog (ELF1, S. cerevisiae)			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-03-30	Elof1_predicted	elongation factor 1 homolog (ELF1, S. cerevisiae) (predicted)	RGD1309855_predicted	similar to RIKEN cDNA 1110011K10 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1309855_predicted	similar to RIKEN cDNA 1110011K10 (predicted)	LOC315466_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC315466_predicted	similar to RIKEN cDNA 1110011K10 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message