TRAF3 (TNF receptor associated factor 3) - Rat Genome Database

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Pathways
Gene: TRAF3 (TNF receptor associated factor 3) Chlorocebus sabaeus
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Symbol: TRAF3
Name: TNF receptor associated factor 3
RGD ID: 18602339
Description: ENCODES a protein that exhibits identical protein binding (inferred); metal ion binding (inferred); protein kinase binding (inferred); INVOLVED IN obsolete negative regulation of NF-kappaB transcription factor activity (ortholog); PARTICIPATES IN Toll-like receptor signaling pathway; ASSOCIATED WITH Ependymomas (ortholog); Herpes Simplex Encephalitis (ortholog); immunodeficiency 132A (ortholog); FOUND IN CD40 receptor complex (inferred); cytoplasm (inferred); cytoplasmic side of plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TNF receptor-associated factor 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12480,735,234 - 80,872,104 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2480,789,699 - 80,866,480 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605367,926,789 - 68,064,185 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TRAF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12480,735,234 - 80,872,104 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2480,789,699 - 80,866,480 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605367,926,789 - 68,064,185 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TRAF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814102,777,449 - 102,911,500 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14102,777,326 - 102,911,500 (+)Ensemblhg38GRCh38
GRCh3714103,243,786 - 103,377,837 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614102,313,569 - 102,442,381 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1483,297,948 - 83,426,752 (+)NCBICelera
Cytogenetic Map14q32.32NCBI
HuRef1483,420,470 - 83,553,138 (+)NCBIHuRef
CHM1_114103,181,586 - 103,315,592 (+)NCBICHM1_1
T2T-CHM13v2.01497,013,797 - 97,147,747 (+)NCBIT2T-CHM13v2.0
Traf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912111,132,799 - 111,233,589 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12111,132,804 - 111,233,587 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3812111,166,321 - 111,267,155 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12111,166,370 - 111,267,153 (+)Ensemblmm10GRCm38
MGSCv3712112,404,759 - 112,505,359 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3612111,667,619 - 111,714,956 (+)NCBIMGSCv36mm8
Celera12112,414,118 - 112,461,451 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.94NCBI
Traf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86136,025,097 - 136,128,363 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6136,027,157 - 136,128,363 (+)EnsemblGRCr8
mRatBN7.26130,199,696 - 130,307,168 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,206,484 - 130,305,481 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6130,377,365 - 130,477,985 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06130,673,357 - 130,773,978 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06130,035,648 - 130,137,227 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd6137,198,989 - 137,300,582 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive6136,636,188 - 136,737,776 (+)NCBILyon_Normotensive
Lyon_Hypertensive6134,418,682 - 134,520,281 (+)NCBILyon_Hypertensive
F344_StmMcwi6133,566,996 - 133,668,374 (+)NCBIF344_StmMcwi
Rnor_6.06135,610,698 - 135,720,247 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,610,743 - 135,718,564 (+)Ensemblrn6Rnor6.0
Rnor_5.06144,694,225 - 144,804,047 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46135,925,375 - 136,027,270 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6127,764,032 - 127,864,462 (+)NCBICelera
RGSC_v3.16136,003,658 - 136,028,793 (+)NCBI
Cytogenetic Map6q32NCBI
Traf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555381,954,152 - 2,013,367 (+)Ensembl
ChiLan1.0NW_0049555381,954,152 - 2,013,367 (+)NCBIChiLan1.0ChiLan1.0
TRAF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215103,925,240 - 104,063,777 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114103,141,744 - 103,280,275 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01483,392,689 - 83,530,974 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114103,263,222 - 103,346,383 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14103,263,440 - 103,340,670 (+)EnsemblpanPan2panpan1.1
TRAF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1870,739,389 - 70,794,448 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl870,739,417 - 70,790,645 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha870,191,158 - 70,304,538 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0870,955,838 - 71,067,673 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl870,955,772 - 71,069,303 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1870,619,852 - 70,733,066 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0870,684,215 - 70,797,522 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0871,084,379 - 71,197,763 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Traf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086403,240,015 - 3,351,172 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936835844,727 - 950,664 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936835844,747 - 955,900 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.27128,912,139 - 129,006,560 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Traf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247341,728,255 - 1,786,010 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247341,728,353 - 1,820,345 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Traf3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v17128,815,397 - 128,840,328 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in TRAF3
2436 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000008233   ⟹   ENSCSAP00000006382
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2480,789,699 - 80,866,480 (+)Ensembl
RefSeq Acc Id: XM_007987916   ⟹   XP_007986107
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12480,735,428 - 80,872,104 (+)NCBI
Vero_WHO_p1.0NW_02366605367,926,859 - 68,064,185 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007987917   ⟹   XP_007986108
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12480,789,674 - 80,872,104 (+)NCBI
Vero_WHO_p1.0NW_02366605367,926,866 - 68,064,185 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007987919   ⟹   XP_007986110
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12480,735,234 - 80,872,104 (+)NCBI
Vero_WHO_p1.0NW_02366605367,926,789 - 68,064,185 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007987920   ⟹   XP_007986111
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12480,789,672 - 80,872,104 (+)NCBI
Vero_WHO_p1.0NW_02366605367,926,866 - 68,064,185 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007987921   ⟹   XP_007986112
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12480,789,672 - 80,872,104 (+)NCBI
Vero_WHO_p1.0NW_02366605367,926,866 - 68,064,185 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007987922   ⟹   XP_007986113
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12480,789,671 - 80,872,104 (+)NCBI
Vero_WHO_p1.0NW_02366605367,926,866 - 68,064,185 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037984566   ⟹   XP_037840494
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605367,926,866 - 68,064,185 (+)NCBI
RefSeq Acc Id: XM_037984567   ⟹   XP_037840495
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605367,974,079 - 68,064,185 (+)NCBI
RefSeq Acc Id: XM_037984568   ⟹   XP_037840496
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605367,926,866 - 68,064,185 (+)NCBI
RefSeq Acc Id: XP_007986110   ⟸   XM_007987919
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RCP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007986107   ⟸   XM_007987916
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RCP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007986113   ⟸   XM_007987922
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007986111   ⟸   XM_007987920
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007986112   ⟸   XM_007987921
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007986108   ⟸   XM_007987917
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RCP3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000006382   ⟸   ENSCSAT00000008233
RefSeq Acc Id: XP_037840494   ⟸   XM_037984566
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RCP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037840496   ⟸   XM_037984568
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RCP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037840495   ⟸   XM_037984567
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RCP3 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000010146 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000008233.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
  Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2, Chain A UniProtKB/TrEMBL
InterPro MATH/TRAF_dom UniProtKB/TrEMBL
  TNF_rcpt-assoc_TRAF_met UniProtKB/TrEMBL
  TRAF-like UniProtKB/TrEMBL
  TRAF3 UniProtKB/TrEMBL
  TRAF3/5_RING UniProtKB/TrEMBL
  TRAF3_MATH UniProtKB/TrEMBL
  TRAF_MEP1_MATH_dom UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
  Znf_TRAF UniProtKB/TrEMBL
KEGG Report csab:103229744 UniProtKB/TrEMBL
NCBI Gene TRAF3 ENTREZGENE
PANTHER PTHR10131 UniProtKB/TrEMBL
  PTHR10131:SF76 UniProtKB/TrEMBL
Pfam TRAF-mep_MATH UniProtKB/TrEMBL
  TRAF3_RING UniProtKB/TrEMBL
  zf-TRAF UniProtKB/TrEMBL
PIRSF TRAF UniProtKB/TrEMBL
PROSITE MATH UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
  ZF_TRAF UniProtKB/TrEMBL
SMART MATH UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  TRAF domain-like UniProtKB/TrEMBL
  Trimerization domain of TRAF UniProtKB/TrEMBL
UniProt A0A0D9RCP3 ENTREZGENE, UniProtKB/TrEMBL