DTNB (dystrobrevin beta) - Rat Genome Database

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Gene: DTNB (dystrobrevin beta) Chlorocebus sabaeus
Analyze
Symbol: DTNB
Name: dystrobrevin beta
RGD ID: 18480276
Description: ENCODES a protein that exhibits DNA binding (ortholog); phosphatase binding (ortholog); INVOLVED IN neuron differentiation (inferred); synaptic signaling (inferred); FOUND IN GABA-ergic synapse (ortholog); inhibitory synapse (ortholog); postsynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11481,978,427 - 82,282,849 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604529,877,198 - 30,178,986 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
DTNB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11481,978,427 - 82,282,849 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604529,877,198 - 30,178,986 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
DTNB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38225,377,243 - 25,673,577 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl225,377,028 - 25,673,717 (-)Ensemblhg38GRCh38
GRCh37225,600,112 - 25,896,446 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36225,453,616 - 25,750,007 (-)NCBIBuild 36Build 36hg18NCBI36
Celera225,440,455 - 25,736,846 (-)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef225,337,463 - 25,633,574 (-)NCBIHuRef
CHM1_1225,529,919 - 25,826,226 (-)NCBICHM1_1
T2T-CHM13v2.0225,412,572 - 25,708,881 (-)NCBIT2T-CHM13v2.0
Dtnb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39123,622,372 - 3,834,070 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl123,622,381 - 3,831,796 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38123,572,372 - 3,785,486 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl123,572,381 - 3,781,796 (+)Ensemblmm10GRCm38
MGSCv37123,572,391 - 3,781,398 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36123,572,523 - 3,781,505 (+)NCBIMGSCv36mm8
Celera123,500,288 - 3,709,433 (+)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map121.88NCBI
Dtnb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8632,286,022 - 32,483,007 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl632,285,941 - 32,485,872 (+)EnsemblGRCr8
mRatBN7.2626,566,418 - 26,763,467 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl626,566,925 - 26,766,335 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx626,859,268 - 27,055,798 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0627,175,183 - 27,371,711 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0626,653,548 - 26,850,392 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd633,726,856 - 33,923,588 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive633,163,158 - 33,359,887 (+)NCBILyon_Normotensive
Lyon_Hypertensive630,958,957 - 31,155,691 (+)NCBILyon_Hypertensive
F344_StmMcwi630,178,875 - 30,375,402 (+)NCBIF344_StmMcwi
Rnor_6.0627,975,302 - 28,177,236 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl627,975,417 - 28,177,214 (+)Ensemblrn6Rnor6.0
Rnor_5.0637,787,793 - 37,986,165 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4626,542,148 - 26,742,199 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera626,042,938 - 26,238,448 (+)NCBICelera
RGSC_v3.1626,545,100 - 26,745,151 (+)NCBI
Cytogenetic Map6q14NCBI
Dtnb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554697,398,127 - 7,671,899 (-)Ensembl
ChiLan1.0NW_0049554697,402,777 - 7,771,767 (-)NCBIChiLan1.0ChiLan1.0
DTNB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212100,843,189 - 101,139,871 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A100,847,159 - 101,143,635 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A25,378,862 - 25,675,556 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A25,476,274 - 25,749,937 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A25,476,274 - 25,749,937 (-)EnsemblpanPan2panpan1.1
DTNB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11719,619,745 - 19,863,697 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1719,516,792 - 19,761,595 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01719,895,403 - 20,187,150 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1719,895,340 - 20,185,797 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11719,629,332 - 19,874,605 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01719,639,273 - 19,884,237 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01719,685,630 - 19,930,471 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dtnb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629263,958,040 - 64,188,819 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364936,676,037 - 6,881,626 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364936,676,146 - 6,881,112 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DTNB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.13113,229,161 - 113,477,009 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23120,246,444 - 120,451,748 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Dtnb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247387,603,252 - 8,100,369 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247387,607,885 - 7,941,335 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Dtnb
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1724,255,710 - 24,448,503 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in DTNB
6673 total Variants

Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007971256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038006654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_073022855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JBLKOC010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_038006654   ⟹   XP_037862582
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604529,877,198 - 30,178,986 (-)NCBI
RefSeq Acc Id: XP_037862582   ⟸   XM_038006654


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008613 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006669.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.60.90 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro Distrobrevin UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF-hand_dom_typ1 UniProtKB/TrEMBL
  EF-hand_dom_typ2 UniProtKB/TrEMBL
  KCMF1/Dystrophin UniProtKB/TrEMBL
  Znf_ZZ UniProtKB/TrEMBL
  Znf_ZZ_sf UniProtKB/TrEMBL
NCBI Gene DTNB ENTREZGENE
PANTHER DYSTROBREVIN BETA UniProtKB/TrEMBL
  E3 UBIQUITIN-PROTEIN LIGASE KCMF1 UniProtKB/TrEMBL
Pfam EF-hand_2 UniProtKB/TrEMBL
  EF-hand_3 UniProtKB/TrEMBL
  PF00569 UniProtKB/TrEMBL
PIRSF Distrobrevin UniProtKB/TrEMBL
PROSITE ZF_ZZ_1 UniProtKB/TrEMBL
  ZF_ZZ_2 UniProtKB/TrEMBL
SMART ZnF_ZZ UniProtKB/TrEMBL
Superfamily-SCOP EF-hand UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
UniProt A0A0D9R8D1 ENTREZGENE, UniProtKB/TrEMBL